Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04463 and BPUM_2704
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_04463___ytkA.1.24716.seq
# -bsequence dna-align/BPUM_2704___ytkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04463___ytkA-BPUM_2704___ytkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04463___ytkA-BPUM_2704___ytkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04463___ytkA
# 2: BPUM_2704___ytkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity: 293/492 (59.6%)
# Similarity: 293/492 (59.6%)
# Gaps: 111/492 (22.6%)
# Score: 783.5
#
#
#=======================================
BSNT_04463___ 1 ATGAAAAAGATGTTGG------TTGTTCTGCTTTTTTCTGCTTTTTTGCT 44
|||..|||.||||||| |.||..|||| |||.||.||
BPUM_2704___y 1 ATGCGAAAAATGTTGGGAATGATAGTGTTGCT---------TTTGTTACT 41
BSNT_04463___ 45 TAATGGATGCGG---ATCTGGTGAAAGCAAA-----GCAAATACAGCTGA 86
.|.||.|||.|| .|||| .|||||| |||| ||..||
BPUM_2704___y 42 AAGTGCATGTGGGAACTCTG----CAGCAAATAGTGGCAA----AGGGGA 83
BSNT_04463___ 87 GACGCCCGAGGTTTTGGATGTCAAGCTGACCGGGCCTGAAAAAGT----- 131
|..|||.||..|.||.||.||.|||||.||.||.||||||.||||
BPUM_2704___y 84 GGTGCCTGAACTATTAGAAGTGAAGCTTACAGGACCTGAACAAGTGGAGA 133
BSNT_04463___ 132 -AAATCCCGGAGAAAGCGCTGCTTAT----GAAGCAGCCGTATCATATGG 176
|||| ||||||| |||| .|||||||.||..|||||||
BPUM_2704___y 134 AAAAT------GAAAGCG----TTATAGTAAAAGCAGCTGTCACATATGG 173
BSNT_04463___ 177 TGATGAAG-CTG-TGACGGATGCCGATGAAGTAGAGTTTGAAGTATGGAA 224
|||| |.| ||| ||| .||.||.||.||.||..|.||||||||.|||||
BPUM_2704___y 174 TGAT-ACGCCTGTTGA-TGACGCAGACGATGTTCAATTTGAAGTGTGGAA 221
BSNT_04463___ 225 AGAAGGGGAAAAAGA----CGCAAGCCAAATGTTTAAGGC---GAAACAA 267
|||.||.||.||.|| .||||| |||.||.||.| |||| .|
BPUM_2704___y 222 AGATGGCGATAAGGATAACAGCAAG----ATGATTCAGCCAAAGAAA-GA 266
BSNT_04463___ 268 GAA-AAAGGCGTATACCGATTGGAAACGACGTTTAAGGAAGATGG--TGT 314
||| |||||.|||||...|||..|.||..|.|||||..||||||| |.|
BPUM_2704___y 267 GAACAAAGGTGTATATGAATTACATACAGCCTTTAAAAAAGATGGCCTTT 316
BSNT_04463___ 315 ATA-CACTGTCCAA-TCTCATGTCACAGCAAAAAAACAGCATAGCATGCC 362
||| || |.||| || |||||.|||||.|||.|.|||||||..|||||
BPUM_2704___y 317 ATATCA---TACAAGTC-CATGTGACAGCTAAACAGCAGCATAATATGCC 362
BSNT_04463___ 363 GACCTTAAAAG-------TCCAAGTCGGAGACGCCGATGCTGCCAGCAAT 405
|||| ||||.||.|| ||.||..|..||.
BPUM_2704___y 363 -------AAAGACGAACATCCATGTAGG---------TGATGTGAAAAAA 396
BSNT_04463___ 406 CAG---TCA------GAAGAGGAGCATTCACATCATCATTGA 438
.|| ||| |||||.||....|||||||||.|.
BPUM_2704___y 397 GAGAATTCATCTACTGAAGAAGAAACCTCACATCATTAA--- 435
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