Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04453 and BPUM_2694
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_04453.1.24716.seq
# -bsequence dna-align/BPUM_2694.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04453-BPUM_2694.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04453-BPUM_2694.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04453
# 2: BPUM_2694
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity: 686/1055 (65.0%)
# Similarity: 686/1055 (65.0%)
# Gaps: 103/1055 ( 9.8%)
# Score: 1991.5
#
#
#=======================================
BSNT_04453 1 GTGAACAGATGGT----------TAAGGCTGGGCTTCGCCTGT-GTCG-- 37
.||| ||.|| |.||.||||..|||..| || ||||
BPUM_2694 1 TTGA----ATCGTTCCATCAAAGTCAGACTGGCATTCATC-GTCGTCGTC 45
BSNT_04453 38 --GCAGTATCTTTCT--GATGT-TCGCCCTGGCGGCTTGCAAGCAGGAAG 82
|| |||||.| .||.| ||||| ||.||..|.|||.
BPUM_2694 46 CTGC----TCTTTATTCCATTTGTCGCC---------TGTAAAAAAGAAC 82
BSNT_04453 83 AAACGCTCACCAAAGTCAAAGTAGCTGAAGTGACCCATTCAATTTTTTAC 132
|...||..||| ||..|||||||.||.|||||||||||..|.|||||.
BPUM_2694 83 AGGAGCAGACC---GTACAAGTAGCCGAGGTGACCCATTCGGTCTTTTAT 129
BSNT_04453 133 GCACCTTTATATGTTGCTGAGTCTAAAGGTTTTTTTAAGGAAGAAGGGCT 182
||.||..|.|||||.||....|||.|.|||||.||.||.||||||||.||
BPUM_2694 130 GCTCCGCTTTATGTCGCACTATCTGAGGGTTTCTTCAAAGAAGAAGGCCT 179
BSNT_04453 183 TGATGTCGATGTGAATACGACCTGGGGCGGAGATAAAACGATGACATCGC 232
.||.||.||..||||.||.||.||||||||.||||||||||||||| ||
BPUM_2694 180 GGAGGTTGAACTGAAAACCACTTGGGGCGGCGATAAAACGATGACA--GC 227
BSNT_04453 233 T-TCTT-TCCAACGGCTCCGACATCGCGCTTGTCGGGTCAGAAACATCTA 280
| |||| ||...|||..|.||.|||||.||...|||.||.|||.|.||||
BPUM_2694 228 TCTCTTATCAGGCGGTGCTGATATCGCCCTGACCGGCTCTGAATCCTCTA 277
BSNT_04453 281 TTTATGTCGAAGCGCAAGGGGCTAAAGATCCCGTCATTAATTTCGCCCAG 330
|.|||||.||.||.||||...|.||.|||.|.|||||.||.||.||.|||
BPUM_2694 278 TCTATGTAGAGGCTCAAGACACAAAGGATTCTGTCATGAACTTTGCACAG 327
BSNT_04453 331 CTGACTCAGACAGACGGAACGTTTCTTGTCGCGAGAGAAGATGTTGAACA 380
|||||.||.||||||||.||.||||||||..|.||.||..|.||..|.||
BPUM_2694 328 CTGACCCAAACAGACGGCACATTTCTTGTTTCAAGGGAGAAAGTAAACCA 377
BSNT_04453 381 CTTCGACTGGGATCAGCTGAAAGGAAAA-ACGTTTC-TCGGTCAGCGAAA 428
.|||...||||||||..|.||||||||| || ||| |.||.|||||.||
BPUM_2694 378 ATTCTCTTGGGATCAATTAAAAGGAAAAGAC--TTCTTAGGACAGCGGAA 425
BSNT_04453 429 AGGCGGCATGCCGCAAATGGTCGGCGAGTATGTACTGAACAAACATAAG- 477
||||||||||||||||||||||||.||.|||||..||| |||.|.|||
BPUM_2694 426 AGGCGGCATGCCGCAAATGGTCGGTGAATATGTCTTGA--AAAAAGAAGG 473
BSNT_04453 478 -ATTGACCCGCATAAGGATATAGACCTC-----ATCCAGAACATAGACTT 521
|||||.....|.|||||| |.|| ||.||.||.||.||.||
BPUM_2694 474 CATTGATGTCAAAAAGGAT-----CTTCGTATGATTCAAAATATTGATTT 518
BSNT_04453 522 CGCCAATATTGCCAATGCGTTTGCTTCTGGAACCGGTGAGTATGTACAGC 571
.|||||.|||.|...||||||..|.||||||||.||.||.|.|||.|||.
BPUM_2694 519 TGCCAACATTTCAGGTGCGTTCTCCTCTGGAACTGGCGATTTTGTGCAGT 568
BSNT_04453 572 TCTTTGAACCGCAGGCTTCTCTCTTTGAGAAAAAAGGCATCGGCCATATC 621
|.||.||||||...|||||..|..|.||.|||.||||.|..||..|.||.
BPUM_2694 569 TATTCGAACCGACCGCTTCCTTACTCGAAAAAGAAGGTAAAGGGTACATT 618
BSNT_04453 622 GTGGCTTCATTCGGAGAAGAATCAGGAGAGGTTCCTTATACGACTTTTAT 671
...||.||.||.|||||||..||.||..||||.||.|||||.||.||.||
BPUM_2694 619 ACCGCCTCCTTTGGAGAAGCTTCTGGCAAGGTGCCATATACCACCTTCAT 668
BSNT_04453 672 GGCGAAACAA-AGCTATTTGAAGAAAAATGAAGACACAGCCGTCAAG--T 718
||| |||.|| ||.||.||..||.||||..||||.||.|| |.||| |
BPUM_2694 669 GGC-AAAGAAGAGTTACTTAGAGGAAAACAAAGAGACCGC--TGAAGCCT 715
BSNT_04453 719 TTACAAAAGCCATTTATAAGGCGCAGCAGTGGGTTGAA---AATCATTCT 765
|.||....||||||||.||.||||||.|.|||||.||| ||.||..||
BPUM_2694 716 TCACCCGCGCCATTTACAAAGCGCAGAAATGGGTAGAAGCCAAACAGCCT 765
BSNT_04453 766 GCGAAGGACATCACAGATGCCATTAAAGATGAATTTGATGATACCGACCC 815
| ||||.|||.||.|.||||||.||..|.|.|||..||||||.||.|.
BPUM_2694 766 G---AGGAGATCGCAAAGGCCATTCAATCTCATTTTCCTGATACAGATCT 812
BSNT_04453 816 AGACGTC--ATCGAAACATCCATTGAACGCTATAAAAAACAGCATTCATA 863
.||.||| ||| |||..|.||..|||||||.|||.|.||..||||.|.
BPUM_2694 813 TGATGTCTTATC--AACTGCGATCAAACGCTACAAACAGCAAGATTCCTT 860
BSNT_04453 864 TTCACCAGACCCTCTGCTTAACGAAAAAGAATGGGAGCTTCTCCAAA--- 910
|.||.||||.||.||..|.||.|||.|.||||||.| ||||
BPUM_2694 861 TGCAACAGATCCCCTTTTGAATGAAGAGGAATGGAA-------CAAATTG 903
BSNT_04453 911 ----CCATTATGGATAAATCGGGAGAACTGCCGAAGCACATT----CCAT 952
..||.|||.|.|||...||.|||.|||||.| ||| ||.|
BPUM_2694 904 CAGGAAATCATGAAGAAAAGCGGTGAATTGCCGGA----ATTTATCCCGT 949
BSNT_04453 953 ACAATCAGCTTGTAAATAAAGAAATTGCTGAAAAAGTCAC--CTCGGAGA 1000
||||.||.|||||..||......|||||..|.||.||||| .|| |.|
BPUM_2694 950 ACAAACAACTTGTCGATTCCTCCATTGCAAAGAAGGTCACAGATC--ACA 997
BSNT_04453 1001 AATAG 1005
|||||
BPUM_2694 998 AATAG 1002
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