Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04452 and BPUM_2689

See Amino acid alignment / Visit BSNT_04452 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_04452___ytmA.1.24716.seq
#    -bsequence dna-align/BPUM_2689___ytmA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04452___ytmA-BPUM_2689___ytmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04452___ytmA-BPUM_2689___ytmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04452___ytmA
# 2: BPUM_2689___ytmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     553/836 (66.1%)
# Similarity:   553/836 (66.1%)
# Gaps:         103/836 (12.3%)
# Score: 1792.5
# 
#
#=======================================

BSNT_04452___      1 TTGATTGTAGAGAAAAGAAGATTTCCGTCGCCAAGCCA---GCATGTGCG     47
                     .|||||||.||.||||||||.||||||||.||   |||   |||..|.|.
BPUM_2689___y      1 GTGATTGTGGAAAAAAGAAGGTTTCCGTCCCC---CCATCCGCAGATTCA     47

BSNT_04452___     48 TTTGTATACGATCTGCTATCTGTCAAATGGATTACGGGTTAAGGGGCTTC     97
                     .||.|.|||..|...||||..|..|.|||||.|.|||.|.||.|||||.|
BPUM_2689___y     48 CTTATTTACAGTGACCTATGAGGTAGATGGACTTCGGATCAAAGGGCTGC     97

BSNT_04452___     98 TGGCTGA----GCCGGCGGAACCGGGACAATATGACGGATTTTTATATTT    143
                     |.|||||    |||||.|.|    ||.||.||||||||.|||||.|||||
BPUM_2689___y     98 TTGCTGAACCTGCCGGAGAA----GGTCATTATGACGGCTTTTTGTATTT    143

BSNT_04452___    144 GCGCGGCGGGATTAAAAGCGTGGGCATGGTTCGGCCGGGCCGGATTATCC    193
                     ..|.|||||.||.||||..|||||.|||||..|.||.|||||.|||.|.|
BPUM_2689___y    144 AAGAGGCGGCATAAAAAATGTGGGAATGGTGAGACCAGGCCGAATTGTGC    193

BSNT_04452___    194 AGTTTGCATCCCAAGGGTTTGTGGTGTTTGCTCCTTTTTACAGAGGCAAT    243
                     |.|||||..|.||.||.|||||.||.|||||.|||||||||.||||.|||
BPUM_2689___y    194 AATTTGCCGCGCAGGGATTTGTCGTATTTGCCCCTTTTTACCGAGGAAAT    243

BSNT_04452___    244 CAAGGAGGAGAAGGCAATGAGGATTTTGCCGGAGAAGACAGGGAGGATGC    293
                     ||||||||.|||||.||.||.||.|||||.|||||.|||.||.|.|||||
BPUM_2689___y    244 CAAGGAGGCGAAGGGAACGAAGACTTTGCTGGAGAGGACCGGAAAGATGC    293

BSNT_04452___    294 ATTTTCTGCTTTTCGCCTGCTTCAGCAGCACCCAAATGTCAAGAAGGATA    343
                     .|||.||||.||||...||.|..||||.|||..|||.||.|||.|||||.
BPUM_2689___y    294 TTTTGCTGCCTTTCAATTGTTAAAGCATCACAAAAAGGTGAAGCAGGATC    343

BSNT_04452___    344 GAGTCCACATCTTCGGCTTTTCTCGCGGCGGAATTATGGGAATGCTT--A    391
                     |..|.||.|||||.||.|||||.|||||.||.||||||||.||  ||  |
BPUM_2689___y    344 GTATTCATATCTTTGGTTTTTCGCGCGGAGGCATTATGGGCAT--TTGGA    391

BSNT_04452___    392 CTGCTATCGAAATG------GGCGGGCAGGCAGCTTCATTTGTTTCCTGG    435
                     |||||.||||||||      |      ||||.||.||.|||||..|.|||
BPUM_2689___y    392 CTGCTGTCGAAATGAAACAAG------AGGCGGCCTCCTTTGTGACATGG    435

BSNT_04452___    436 GGAGGCGTCAGTGATATGATTCTTACATACGAGGAGCGGCAGGATTTGCG    485
                     ||||||||.||||||||||..|||||.||.||.|||||...||||.||.|
BPUM_2689___y    436 GGAGGCGTTAGTGATATGAAGCTTACCTATGAAGAGCGTGTGGATATGAG    485

BSNT_04452___    486 GCGAATGATGAAAAGAGTCATCGGCGGAACACCGAAAAAGGTGCCTGAGG    535
                     ..|.|||||||||.|.||.||.|||||..|.|||.|.||||||||.||||
BPUM_2689___y    486 AAGGATGATGAAACGTGTGATTGGCGGTCCCCCGCATAAGGTGCCAGAGG    535

BSNT_04452___    536 AATATCAATGGAGGACA-----CCGTTTGACCAAGTAAACAAAATTCAGG    580
                     ..|||     |||||||     ||.||..|..|.||..||||||||.|.|
BPUM_2689___y    536 CCTAT-----GAGGACAGAACGCCTTTAAATGATGTGGACAAAATTGAAG    580

BSNT_04452___    581 CTCCCGTGCTGTTAATCCATGGAGAAAAAGACCAAAATGTTTCGATTCAG    630
                     |.||.||.|||.|.|||||.||||||.|.||.||||||||.||.|||.||
BPUM_2689___y    581 CGCCTGTTCTGATCATCCACGGAGAAGAGGATCAAAATGTATCCATTGAG    630

BSNT_04452___    631 CATTCCTATTTATTAGAAGAGAAGCTAAAACAACTGCA---TAAGCCGGT    677
                     |||.|.||||||||||||||...|||   .|..|.|||   .|||.|.||
BPUM_2689___y    631 CATGCGTATTTATTAGAAGATGCGCT---GCGCCAGCACGGGAAGTCAGT    677

BSNT_04452___    678 GGAAACATGGTACTACAGTACAT----TCACACATTATTTCCCGCCAAAA    723
                     |||.||.|||||.|    |.|||    .||..||||||||.||.||    
BPUM_2689___y    678 GGAGACTTGGTATT----TCCATGGGCGCAACCATTATTTTCCACC----    719

BSNT_04452___    724 GAAAACCGGCGT-ATCGTG-------CGGCA-GCTCAC-ACAATGGAT--    761
                          |||||.| ||||.|       |.|.| |||.|| || .|||||  
BPUM_2689___y    720 -----CCGGCATAATCGCGAAATTGTCAGAAGGCTGACGAC-GTGGATGC    763

BSNT_04452___    762 -------GAAAAACCGCTGA----------------    774
                            |||||.|    ||                
BPUM_2689___y    764 TCAGCCGGAAAAGC----GAAAATGTGGTAAAATAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04452 and BPUM_2689

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
