Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04450 and BPUM_2688

See Amino acid alignment / Visit BSNT_04450 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_04450___ytmB.1.24716.seq
#    -bsequence dna-align/BPUM_2688.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04450___ytmB-BPUM_2688.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04450___ytmB-BPUM_2688.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04450___ytmB
# 2: BPUM_2688
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 277
# Identity:     164/277 (59.2%)
# Similarity:   164/277 (59.2%)
# Gaps:          68/277 (24.5%)
# Score: 513.0
# 
#
#=======================================

BSNT_04450___      1 TTGGGAATGCCTGTTGAATTTAATACACTGATTGTGACAAAAGGAAAAG-     49
                     .||||||||||||||||||||||||||.|||||||.||.||.||||||| 
BPUM_2688          1 ATGGGAATGCCTGTTGAATTTAATACAATGATTGTCACGAAGGGAAAAGA     50

BSNT_04450___     50 ---AAGTTCGCATAGATGAAAATATATT----CACGTTAGAGAAGGACGG     92
                        ||    |.||.||.||.|||.||||    |.|.|    ||||||.||
BPUM_2688         51 GACAA----GAATTGAAGAGAATGTATTTGAACTCAT----GAAGGAAGG     92

BSNT_04450___     93 ATACCGAGTATATCCGATGGAGATTCCAATGGATGTACGCAAAAC-AAAG    141
                     ||||||..|.|||||..|..|.|||||..|.||.||.||.||||| ||||
BPUM_2688         93 ATACCGCATTTATCCATTAAATATTCCGCTTGAGGTGCGTAAAACGAAAG    142

BSNT_04450___    142 TTTGGCGAAAAGTCAGGCACAGC------TGAAGTGCAGAAGCTT-----    180
                      ..||.|||||..||||.|||||      ||||..||.|.|||||     
BPUM_2688        143 -ACGGAGAAAAAACAGGGACAGCACATGTTGAAAAGCTGGAGCTTACAGA    191

BSNT_04450___    181 CAATGGGAAGACGGCCGGAC-----------CATCATTACAT---ACAAG    216
                     |||||.||..|.||.|  ||           .||||||||||   ||||.
BPUM_2688        192 CAATGTGACTAAGGTC--ACTTATCGTCTCGTATCATTACATTCAACAAA    239

BSNT_04450___    217 CTGACTTCTTTGCATTCCGTCAATTAA    243
                     ||.|                       
BPUM_2688        240 CTAA-----------------------    243


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