Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04448 and BPUM_2686
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04448___metK.1.24716.seq
# -bsequence dna-align/BPUM_2686___metK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04448___metK-BPUM_2686___metK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04448___metK-BPUM_2686___metK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04448___metK
# 2: BPUM_2686___metK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1208
# Identity: 967/1208 (80.0%)
# Similarity: 967/1208 (80.0%)
# Gaps: 10/1208 ( 0.8%)
# Score: 3849.0
#
#
#=======================================
BSNT_04448___ 1 ATGAGTAAAAATCGTCGTTTATTTACATCAGAATCTGTTACGGAGGGGCA 50
||||||.|||||||||||||||||||.||||||||.||.||.||.||.||
BPUM_2686___m 1 ATGAGTCAAAATCGTCGTTTATTTACTTCAGAATCAGTGACAGAAGGACA 50
BSNT_04448___ 51 TCCGGATAAAATCTGTGACCAGATTTCTGACAGCATTTTAGATGAAATTT 100
|||||||||||||||||||||.|||||.|||||||||||.|||||||||.
BPUM_2686___m 51 TCCGGATAAAATCTGTGACCAAATTTCAGACAGCATTTTGGATGAAATTC 100
BSNT_04448___ 101 TAAAGAAAGACCCTAACGCGCGTGTTGCTTGTGAAACATCTGTGACAACA 150
||||||||||.||.||.||.||||||||.||||||||.|||||.|||||.
BPUM_2686___m 101 TAAAGAAAGATCCAAATGCACGTGTTGCCTGTGAAACTTCTGTTACAACG 150
BSNT_04448___ 151 GGTTTGGTTCTTGTAAGCGGAGAGATCACAACTTCTACGTATGTTGACAT 200
|||.|.||..|.|||||||||||.||.|||||.|||||.|||||.||.||
BPUM_2686___m 151 GGTCTCGTATTAGTAAGCGGAGAAATTACAACGTCTACTTATGTCGATAT 200
BSNT_04448___ 201 TCCGAAAACGGTTCGCCAAACCATTAAAGAAATCGGATACACACGTGCAA 250
|||.||.|||||.||..|.||.|||||.|||||.||.|||||||||||.|
BPUM_2686___m 201 TCCAAAGACGGTGCGTGACACGATTAAGGAAATTGGCTACACACGTGCGA 250
BSNT_04448___ 251 AATACGGATTTGATGCGGAAACTTGTGCGGTTTTAACATCAATTGATGAG 300
||||.||.||||||||||||||.|||||.||..|.|||||.||||||||.
BPUM_2686___m 251 AATATGGTTTTGATGCGGAAACATGTGCAGTGCTCACATCCATTGATGAA 300
BSNT_04448___ 301 CAGTCTGCTGATATCGCGATGGGCGTAGACCAAGCGCTTGAAGCCCGTGA 350
||||||||||||||.|||...||.||||||.|||||||||||||.|||||
BPUM_2686___m 301 CAGTCTGCTGATATTGCGCAAGGTGTAGACAAAGCGCTTGAAGCACGTGA 350
BSNT_04448___ 351 AGGCACAATGAGCGACGAAGAAATTGAAGCGATTGGTGCGGGTGACCAAG 400
|||||||||||..||.||||||.||||.|||||.|||||.||||||||||
BPUM_2686___m 351 AGGCACAATGACTGAAGAAGAACTTGATGCGATCGGTGCAGGTGACCAAG 400
BSNT_04448___ 401 GATTAATGTTCGGTTATGCGTGCAACGAAACGAAAGAGCTTATGCCTCTT 450
||||||||||.||||.|||...|||||||||..||||.||||||||.||.
BPUM_2686___m 401 GATTAATGTTTGGTTTTGCCAACAACGAAACTGAAGAACTTATGCCGCTA 450
BSNT_04448___ 451 CCAATTTCACTTGCCCATAAATTAGCCCGCCGCCTAAGTGAAGTCCGTAA 500
|||||||||||.||.|||||||||.|.|.|||..|||.||||||.|||||
BPUM_2686___m 451 CCAATTTCACTAGCACATAAATTATCTCTCCGTTTAACTGAAGTACGTAA 500
BSNT_04448___ 501 AGAAGATATTCTTCCGTACCTTCGCCCTGACGGCAAAACACAGGTAACGG 550
.||..|.|..|||.|.||.|||||.||.||.||.||||||||.|||||.|
BPUM_2686___m 501 GGATCAAACACTTGCCTATCTTCGTCCAGATGGAAAAACACAAGTAACAG 550
BSNT_04448___ 551 TTGAGTACGATGAAAATAACAAACCAGTCCGCATTGACGCGATTGTTATT 600
|.||.||.|||||..|.||.|||||.||.||.|||||..|..|.||||||
BPUM_2686___m 551 TAGAATATGATGATCAAAATAAACCTGTTCGTATTGATACAGTGGTTATT 600
BSNT_04448___ 601 TCAACTCAGCAT-CATCCTGAAATTACACTTGAGCAAATTCAGCGCAACA 649
||.||.|||||| || ||.|||.|.||.|||||.||||||||..||.||.
BPUM_2686___m 601 TCTACCCAGCATGCA-CCAGAAGTGACGCTTGAACAAATTCAAAGCGACT 649
BSNT_04448___ 650 TTAAAGAACATGTAATCAATCCGGTTGTTCC---TGAAGAGCTGATTGAT 696
|.|||||.|||||.||||..||.||.||||| |||| ||.||||||
BPUM_2686___m 650 TAAAAGAGCATGTCATCAGCCCTGTCGTTCCAAGTGAA---CTAATTGAT 696
BSNT_04448___ 697 GAAGAAACAAAATATTTCATCAACCCTACAGGACGTTTCGTAATCGGAGG 746
|||.|.||||||||.||.||.|||||.||.||.||||||||.|||||.||
BPUM_2686___m 697 GAACAGACAAAATACTTTATTAACCCAACTGGTCGTTTCGTGATCGGCGG 746
BSNT_04448___ 747 CCCTCAAGGGGATGCGGGACTTACAGGACGCAAAATCATCGTTGATACGT 796
.||||||||||||||.||..|.||.|||||.|||||||||||||||||||
BPUM_2686___m 747 ACCTCAAGGGGATGCTGGTTTAACTGGACGTAAAATCATCGTTGATACGT 796
BSNT_04448___ 797 ACGGCGGCTATGCACGCCACGGCGGAGGCGCGTTCTCAGGTAAGGACGCG 846
|.|||||.||.||.||.||.|||||.||.||.|||||.||.||||||||.
BPUM_2686___m 797 ATGGCGGATACGCTCGTCATGGCGGTGGTGCTTTCTCTGGGAAGGACGCA 846
BSNT_04448___ 847 ACGAAGGTAGACCGTTCTGCAGCTTATGCGGCAAGATACGTTGCGAAAAA 896
||.|||||.||||||||.||.||.|||||.||..|.|||||.||||||||
BPUM_2686___m 847 ACAAAGGTTGACCGTTCAGCGGCATATGCTGCTCGTTACGTAGCGAAAAA 896
BSNT_04448___ 897 CATCGTTGCGGCTGAGCTTGCTGATTCTTGCGAAGTACAGCTTGCTTACG 946
||||||.||.||.|..||||||||||||||.||||||||.||||||||.|
BPUM_2686___m 897 CATCGTAGCTGCCGGCCTTGCTGATTCTTGTGAAGTACAACTTGCTTATG 946
BSNT_04448___ 947 CGATCGGTGTTGCACAGCCTGTGTCAATCTCAATCAACACATTCGGTTCA 996
|.||.|||||||||||||||||.||.||.|||||..|.||.|||||..||
BPUM_2686___m 947 CAATTGGTGTTGCACAGCCTGTATCGATTTCAATTGATACTTTCGGAACA 996
BSNT_04448___ 997 GGAAAAGCTTCTGAGGAAAAACTGATTGAAGTTGTTCGCAATAACTTTGA 1046
||||||||||||||.||||||.|.||||||||.|||||....|||||.||
BPUM_2686___m 997 GGAAAAGCTTCTGAAGAAAAATTAATTGAAGTGGTTCGTGCGAACTTCGA 1046
BSNT_04448___ 1047 TTTACGACCTGCCGGCATTATCAAAATGCTTGATTTGCGCCGTCCGATCT 1096
|.|.||.||.||.||||||||.|||||||||||..||||.||||||||||
BPUM_2686___m 1047 TCTTCGTCCAGCTGGCATTATTAAAATGCTTGACCTGCGTCGTCCGATCT 1096
BSNT_04448___ 1097 ATAAACAAACTGCTGCGTACGGCCACTTTGGACGTCACGATGTTGACCTT 1146
|.||||||||.|||||.|||||.||.||.||.|||||.|||.|.||.|||
BPUM_2686___m 1097 ACAAACAAACAGCTGCATACGGACATTTCGGCCGTCATGATTTAGATCTT 1146
BSNT_04448___ 1147 CCATGGGAGCGCACAGACAAAGCGGA-GCAGCTGCGTAAAGAAGCGTTAG 1195
||.|||||....|||||.|||||.|| .|| ||.|||.|||||||.||||
BPUM_2686___m 1147 CCGTGGGAAAAAACAGATAAAGCCGATACA-CTTCGTCAAGAAGCATTAG 1195
BSNT_04448___ 1196 GAGAATAA 1203
||.|||||
BPUM_2686___m 1196 GACAATAA 1203
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