Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04447 and BPUM_2685
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04447___asnB.1.24716.seq
# -bsequence dna-align/BPUM_2685___asnB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04447___asnB-BPUM_2685___asnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04447___asnB-BPUM_2685___asnB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04447___asnB
# 2: BPUM_2685___asnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1946
# Identity: 1466/1946 (75.3%)
# Similarity: 1466/1946 (75.3%)
# Gaps: 94/1946 ( 4.8%)
# Score: 5359.0
#
#
#=======================================
BSNT_04447___ 1 ATGTGTGGATTTGTCGGGGTTTTTAACAAGCATCCGTTAGCTCAAACCGC 50
||||||||.|||||.||.||.|||||..|.|.|||.||..|..||||..|
BPUM_2685___a 1 ATGTGTGGGTTTGTTGGTGTGTTTAATCACCGTCCATTGTCCGAAACTAC 50
BSNT_04447___ 51 TGATCAAGAAGAACTAATCAAACAAATGAACCAAATGATCGTTCACCGCG 100
|||.||.|||||..||||.|||||||||||||...|.|||||||||||.|
BPUM_2685___a 51 TGAGCAGGAAGAGTTAATTAAACAAATGAACCGTCTCATCGTTCACCGTG 100
BSNT_04447___ 101 GTCCTGACAGTGATGGATATTTCCATGATGAGCACGTCGGCTTCGGATTC 150
||||.||...|||.||.||.||.|||||||||||.||.||.||.|||||.
BPUM_2685___a 101 GTCCGGATGATGAGGGTTACTTTCATGATGAGCATGTAGGATTTGGATTT 150
BSNT_04447___ 151 AGACGGCTCAGCATTATTGATGTAGAAAATGGCGGA---CAGCCTTTATC 197
|||||..|.||.|||||.|||||.||..| |||| |||||..|.||
BPUM_2685___a 151 AGACGTTTAAGTATTATAGATGTTGAGCA---CGGAAAGCAGCCGCTTTC 197
BSNT_04447___ 198 ATATGAAGATGAAACATATTGGATTATCTTTAACGGAGAAATCTATAACT 247
.|||||||||||||..|||||||||||.||||||||.|||||.|||||||
BPUM_2685___a 198 GTATGAAGATGAAAAGTATTGGATTATTTTTAACGGGGAAATTTATAACT 247
BSNT_04447___ 248 ATATCGAACTGAGAGAAGAACT--TGAAGCAAAGGGGTACACATTCAACA 295
||.|.||.||||..|||||.|| |||| ||||||.||.||.||||.||
BPUM_2685___a 248 ATGTGGAGCTGAAGGAAGAGCTTGTGAA--AAAGGGCTATACGTTCAGCA 295
BSNT_04447___ 296 CGGATTCGGACACAGAGGTTCTTCTTGCGACTTACCGTCACTATAAAGAA 345
|.|||||.||.||.||.||.||.|||||.||.||||||||.|||||||||
BPUM_2685___a 296 CAGATTCTGATACGGAAGTACTGCTTGCCACATACCGTCATTATAAAGAA 345
BSNT_04447___ 346 GAAGCGGCGTCCAAACTGCGCGGTATGTTTGCCTTTCTGATTTGGAATAA 395
||||||||.||.||.||.|||||.||||||||||||.|.||||||.||||
BPUM_2685___a 346 GAAGCGGCTTCTAAGCTTCGCGGCATGTTTGCCTTTTTAATTTGGGATAA 395
BSNT_04447___ 396 AAACGATCATGTGC---TTTATGGGGCAAGAGATCCATTCGGCATTAAAC 442
|.|.|..|| || |.|||||.|||||||||||.||.|||||.||||
BPUM_2685___a 396 AGAAGCGCA---GCAATTATATGGCGCAAGAGATCCGTTTGGCATCAAAC 442
BSNT_04447___ 443 CG--TTGTATTACACAACGATCAATGATCAGGTTTATTTTGCCTCAGAGA 490
|| ||.|.|||||||| .|..|.||.||.||.||.|||||.||.|||.
BPUM_2685___a 443 CGCTTTATTTTACACAA--GTGGAAGAGCAAGTGTACTTTGCGTCTGAGC 490
BSNT_04447___ 491 GAAAAAGTTTAATGGTTGCTCAGAATGA--------TATTGAAATAGATA 532
|.|||||.||.||| |||..|||.|| |||| |.
BPUM_2685___a 491 GCAAAAGCTTGATG---GCTGTGAACGAGAACATCCTATT--------TG 529
BSNT_04447___ 533 AAGAG---GCATTGCAGCAGTACATGTCTTTCCAATTTGTTCCTGAACCA 579
|.||| .|||||||||||||.|||||.||||||||.||||||||.|||
BPUM_2685___a 530 ATGAGACTTCATTGCAGCAGTATATGTCATTCCAATTCGTTCCTGAGCCA 579
BSNT_04447___ 580 AGCACGCTTGATGCCCATGTGAAAAAAGTAGAGCCGGGTTCA-CAGTTCA 628
|..|||||||||....|.|||.|.|||||.|||||.|| ||| |||||.|
BPUM_2685___a 580 AATACGCTTGATCAAAAGGTGCATAAAGTTGAGCCTGG-TCATCAGTTTA 628
BSNT_04447___ 629 CAATCCGCCCGGACGGC--GATATCACATTCAAAACGTATTTCAAAGCGA 676
...|.||||| |.||| ||.|||..|||.||.||.||.|..||||...
BPUM_2685___a 629 TTTTACGCCC--AGGGCAGGAGATCGAATTTAAGACATACTGGAAAGTTC 676
BSNT_04447___ 677 ACTTCAAGCCGGTTCAGACTGAAGAAGACAAGCTTGTGAAAGAAGTCCGA 726
|.|||||.||.|..||.||..|||||.|.|||.|..|..|||||||.||.
BPUM_2685___a 677 AATTCAAACCTGAGCAAACACAAGAACAGAAGTTAATCGAAGAAGTACGC 726
BSNT_04447___ 727 GACGCGATCTATGACTCTGTAAACGTTCATATGAGAAGTGACGTTCCTGT 776
||.||.||||||||.|||||.||.|||||.|||||||||||.||.|||||
BPUM_2685___a 727 GATGCAATCTATGATTCTGTGAATGTTCACATGAGAAGTGATGTACCTGT 776
BSNT_04447___ 777 CGGTTCGTTCCTGTCTGGCGGGATTGATTCTTCCTTTATTGTGTCTGTTG 826
.|||||.|||||.||.||.||.||||||||||||||.||.||||||||.|
BPUM_2685___a 777 TGGTTCATTCCTATCAGGTGGTATTGATTCTTCCTTCATCGTGTCTGTCG 826
BSNT_04447___ 827 CGAAGGAATTTCATCC-AAGCTTAAAAACATTCTCTGTCGGCTTTGAACA 875
|.||||||||.||.|| .||| ||||.|||||||||||.|||||..|.||
BPUM_2685___a 827 CAAAGGAATTACACCCTGAGC-TAAAGACATTCTCTGTTGGCTTCCAGCA 875
BSNT_04447___ 876 GCAGGGCTTCAGTGAGGTTGATGTAGCGAAAGAAACGGCAGCGGCGCTGG 925
|.|.|||||.|||||.||||||||.|||||||||||.||.|....|||.|
BPUM_2685___a 876 GGATGGCTTTAGTGAAGTTGATGTTGCGAAAGAAACAGCTGATAAGCTAG 925
BSNT_04447___ 926 GCATTGAAAATATCAGCAAAGTCATTTCGCCTGAGGAATACATGAATGAG 975
||.|..||||..|||||...||||||||.||.||||||||.|||||.|||
BPUM_2685___a 926 GCTTACAAAACTTCAGCGCCGTCATTTCTCCAGAGGAATATATGAACGAG 975
BSNT_04447___ 976 CTTCCGAAGATCGTTTGGCATTTTGATGACCCGCTTGCTGATCCGGCAGC 1025
|||||||||||.||.||||||||.||.||.||..|.|||||||||||.||
BPUM_2685___a 976 CTTCCGAAGATTGTCTGGCATTTAGACGATCCTTTAGCTGATCCGGCGGC 1025
BSNT_04447___ 1026 GATTCCGTTGTACTTTGTTGCAAAAGAAGCGAAAAAACATGTTACGGTTG 1075
||||||.||||||||.||.||||||||||||||||||||.||.|||||||
BPUM_2685___a 1026 GATTCCATTGTACTTCGTGGCAAAAGAAGCGAAAAAACAAGTGACGGTTG 1075
BSNT_04447___ 1076 CTTTATCAGGTGAAGGAGCGGATGAGCTCTTCGGCGGATATAACATTTAC 1125
.|.|.|||||||||||||||||.|||||.|||||.||||||||.||||||
BPUM_2685___a 1076 TTCTTTCAGGTGAAGGAGCGGACGAGCTGTTCGGTGGATATAATATTTAC 1125
BSNT_04447___ 1126 CGTGAACCGCTTTCGCTTAAACCGTTTGAACGGATTCCGT-CCGGCT--- 1171
|||||.||.|||||.||||||||.|||||| ||.|| ||..||
BPUM_2685___a 1126 CGTGAGCCTCTTTCTCTTAAACCATTTGAA-----TCTGTACCAACTATG 1170
BSNT_04447___ 1172 -TGAAAAAGATGCTTCTGCACGTTGCTGCCGTT--ATGCCTGAAGGTATG 1218
||||||||.|.|||||.|...|.||| |||| |||||.|||||.|||
BPUM_2685___a 1171 CTGAAAAAGCTTCTTCTTCGTCTGGCT--CGTTTAATGCCAGAAGGAATG 1218
BSNT_04447___ 1219 AGAGGAAAGAGCCTGCTTGAGCGCGGCTGTACTCCGCTTCAGGATCGTTA 1268
|.|||.||||||.|..|.|..|||||.|||||.||..|..||||.|||||
BPUM_2685___a 1219 AAAGGGAAGAGCTTTATCGTTCGCGGTTGTACGCCATTAGAGGAACGTTA 1268
BSNT_04447___ 1269 TATCGGTAACGCGAAAATCTTTGAAGAGTCTGTCAAAAAGCAGCTGTTGA 1318
|||||||||.||||||||.|||||||||.|.||.||.||..|.||.||.|
BPUM_2685___a 1269 TATCGGTAATGCGAAAATTTTTGAAGAGCCAGTGAAGAAAAACCTTTTAA 1318
BSNT_04447___ 1319 AGCATTATAATCCGAACCTTTCATATCGCGATGTGACGAAGACTTACTTT 1368
||||||||.||||.|.|.|..|.|||||.|||||.||||||||.||||||
BPUM_2685___a 1319 AGCATTATGATCCAAGCATCACGTATCGTGATGTAACGAAGACATACTTT 1368
BSNT_04447___ 1369 ACAGAAAGCAGCTCG-TACAGCGATATCAACAAAATGCAGTATGTCGATA 1417
...|||||| |||.| |||||.|||||.|||||||||||.|||||.||||
BPUM_2685___a 1369 GAGGAAAGC-GCTGGCTACAGTGATATTAACAAAATGCAATATGTTGATA 1417
BSNT_04447___ 1418 TCCACACTTGGATGCGCGGCGACATTTTGTTAAAGGCGGATAAAATGACG 1467
||||.||.|||||||||||.|||||.||.||.||.||.|||||.||||||
BPUM_2685___a 1418 TCCATACGTGGATGCGCGGGGACATCTTATTGAAAGCAGATAAGATGACG 1467
BSNT_04447___ 1468 ATGGCGAATTCTTTGGAACTGCGTGTGCCGTTCTTGGATAAAGTCGTATT 1517
||||||||||||.|.||.||.|||||.||.|||.|.|||||.|||||.||
BPUM_2685___a 1468 ATGGCGAATTCTCTTGAGCTTCGTGTTCCATTCCTTGATAAGGTCGTTTT 1517
BSNT_04447___ 1518 CGACGTCGCTTCAAAAATTCCTGATGAGCTGAAAACGAAGAACGGCACGA 1567
|||.|..|||||.||||||||.||.|||||||||||.||..|.|||||.|
BPUM_2685___a 1518 CGAAGCGGCTTCTAAAATTCCAGAAGAGCTGAAAACAAAAGATGGCACAA 1567
BSNT_04447___ 1568 CGAAGTATCTTCTT-CGCAAAGCCGCTGAAGGAATTGTGCCTGAGCACGT 1616
||||.||| ||.|| ||.|||||.||.|||||.|||||||||||.||.||
BPUM_2685___a 1568 CGAAATAT-TTATTGCGTAAAGCAGCAGAAGGCATTGTGCCTGACCATGT 1616
BSNT_04447___ 1617 ATTAAACCGCAAAAAGCTTGGTTTCCCTGTACCGATCCGTCATTGGCTGA 1666
.||||||||.||||||||||||||||||||.||.||.|||||||||||||
BPUM_2685___a 1617 GTTAAACCGTAAAAAGCTTGGTTTCCCTGTGCCAATTCGTCATTGGCTGA 1666
BSNT_04447___ 1667 AAAACGAAATGAACGAATGGGTGCGGAATATTAT--TCAAGAA-AGCCAA 1713
||||.||.|||||.|..||| |||.||.| .|| ||||.|| ||.|||
BPUM_2685___a 1667 AAAATGAGATGAATGCTTGG--GCGAAAGA-CATCATCAAAAACAGTCAA 1713
BSNT_04447___ 1714 ACGGATGCTTATATCCATAAGGATTATGTCCTTCAGCTTCTTGAA-GACC 1762
||.||||..||.||..||||.||.|||||.|||.| .||.||.|| ||.|
BPUM_2685___a 1714 ACAGATGAATACATTAATAAAGAGTATGTGCTTGA-TTTATTAAATGAGC 1762
BSNT_04447___ 1763 ATTGTGCGGACAAGGCTGATAACAGCCGTAAAATTTGGACTGTGCTAATC 1812
|||||||.|..||.||.|||.|.|||||.||.||||||||.||.||.|||
BPUM_2685___a 1763 ATTGTGCTGGTAAAGCAGATCATAGCCGCAAGATTTGGACCGTCCTTATC 1812
BSNT_04447___ 1813 TTTATGATCTGGCACAGCATCAATATTGAAAAACG--GTATATGCCTGA- 1859
||||||||.|||||.|||||..||.|.| |.|| |.|| |||
BPUM_2685___a 1813 TTTATGATTTGGCATAGCATTTATGTGG---AGCGCAGCAT-----TGAT 1854
BSNT_04447___ 1860 --AGAGC---TGAGCCATCAGCCTAAAGAAGTCATCTTT-GTGTAA 1899
||||| |||..|||||.||.||||||||||||||| || |||
BPUM_2685___a 1855 CCAGAGCAGTTGAATCATCAACCGAAAGAAGTCATCTTTAGT-TAA 1899
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