Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04444 and BPUM_2683
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_04444___ytpA.1.24716.seq
# -bsequence dna-align/BPUM_2683___ytpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04444___ytpA-BPUM_2683___ytpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04444___ytpA-BPUM_2683___ytpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04444___ytpA
# 2: BPUM_2683___ytpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 794
# Identity: 576/794 (72.5%)
# Similarity: 576/794 (72.5%)
# Gaps: 28/794 ( 3.5%)
# Score: 2001.5
#
#
#=======================================
BSNT_04444___ 1 ATGTGGACCTGGAAAGCAGACAGACCTGTTG---CAGTGATTGTAATCAT 47
.|||||||.|||.|.||.||.|||||.|||| || |||||.||..|
BPUM_2683___y 1 TTGTGGACTTGGCATGCTGAAAGACCAGTTGGTACA---ATTGTGATAGT 47
BSNT_04444___ 48 TCACGGGGCAAGTGAATATCACGGACGATATAAATGGCTGATTGAAATGT 97
.||.||.|||||||||||||||||.|||||||||||||||||.|||||||
BPUM_2683___y 48 ACATGGTGCAAGTGAATATCACGGCCGATATAAATGGCTGATCGAAATGT 97
BSNT_04444___ 98 GGCGGTCTTCGGGTTATCACGTTGTCATGGGCGATTTGCCTGGACAGGGA 147
||||...|.|.||.||||||||.||||||||.||..|||||||.||.||.
BPUM_2683___y 98 GGCGAAATGCCGGCTATCACGTCGTCATGGGTGACCTGCCTGGGCAAGGG 147
BSNT_04444___ 148 ACAACGACAAGAGCGAGAGGGCATATTCGCTCGTTTCAAGAATACATTGA 197
|||.|||||.|.|||.|.||.||.|||||.||||||||||||||||||||
BPUM_2683___y 148 ACATCGACACGTGCGCGCGGCCACATTCGTTCGTTTCAAGAATACATTGA 197
BSNT_04444___ 198 TGAAGTAGATGCTTGGATAGATAAAGCGCGAACCTTTGA-TCTGCCGGTT 246
|..||||||||..|||||.||..|.||| .||.|.||.| .||.||...|
BPUM_2683___y 198 TACAGTAGATGAATGGATCGAACATGCG-AAATCATTCAGGCTTCCTACT 246
BSNT_04444___ 247 TTTCTTCTAGGTCACAGCATGGGCGGTCTGGTCGCGATTGAATGGGTTAA 296
|||.|.||.||.|||||.||||||||.||..|..|.|||||.|||||.||
BPUM_2683___y 247 TTTTTACTTGGACACAGTATGGGCGGACTCATTTCAATTGAGTGGGTCAA 296
BSNT_04444___ 297 ACAGCAAAGAAATCCC---CG--GATTACGGGAATTATTTTATCATCACC 341
.|||.|.| ||| || ||||...||..||||||||||||||||
BPUM_2683___y 297 GCAGTATA-----CCCATACGAAGATTGATGGCCTTATTTTATCATCACC 341
BSNT_04444___ 342 GTGTCTCGGACTGCAAATTAAAGTCAATAAAGCGC---TTGATCTTGCAT 388
.|||.|.||.||||||.|||||...||.|| || |.|||.||||||
BPUM_2683___y 342 TTGTTTAGGTCTGCAATTTAAACCGAAGAA---GCTAATGGATTTTGCAT 388
BSNT_04444___ 389 CAAAAGGTCTGAATGTCATCGCTCCGTCACTTAAGGTTGATTCGGGATTA 438
||||||||.|.|||||..||||.|||||..||||.||.||.||.||..|.
BPUM_2683___y 389 CAAAAGGTTTAAATGTGCTCGCACCGTCCTTTAAAGTCGAGTCAGGGCTG 438
BSNT_04444___ 439 TCAATTGATATGGCGACGCGCAATGAGGACGTCATCGAGGCTGACCAAAA 488
||.|||||..|.||.||.||.|||.|||..||.||.||.||.|||...||
BPUM_2683___y 439 TCGATTGAACTAGCCACACGAAATCAGGCTGTGATTGAAGCAGACTCCAA 488
BSNT_04444___ 489 TGATTCGTTATACGTCAGGAAAGTTTCTGTCAGATGGTACAGAGAGCTTT 538
|||.||..|.|||||.|..||.||.||.||..|.||||||.|||||||..
BPUM_2683___y 489 TGACTCCCTTTACGTAACAAAGGTGTCGGTTCGCTGGTACCGAGAGCTGA 538
BSNT_04444___ 539 TAAAGACAATTGAATCGGCAATGGTGCCGACAGAGGCATTTTTGAA--AG 586
|.||.|..|||||..||||.|||..|||.||..|.| |||||.|| |.
BPUM_2683___y 539 TCAAAAATATTGATGCGGCCATGCAGCCAACGAATG--TTTTTAAAACAA 586
BSNT_04444___ 587 TTCCGCTTCTTGTGATGCAAGCCGGTGATGACAAGCTTGTTGACAAAACG 636
|||||||.|||.|.|||||.||.||||||||.|||.|.||.|||||.|||
BPUM_2683___y 587 TTCCGCTCCTTTTAATGCAGGCGGGTGATGATAAGATCGTCGACAAGACG 636
BSNT_04444___ 637 ATGGTCATCAAGTGGTTTAATGGTGTTGCTTCTCATAATAAAGCATACAG 686
|.|||.||.||.|||||.|||||..|||..||....|||||..||||..|
BPUM_2683___y 637 AGGGTGATTAAATGGTTCAATGGCATTGAATCAACCAATAAGTCATATCG 686
BSNT_04444___ 687 AGAGTGGGAAGGGCTTTACCATGAGATCTTCAATGAACCCGAGAGAGAAG 736
.||.|||||||..||.||.||.||.||.||.||||||||.||.|||||||
BPUM_2683___y 687 TGAATGGGAAGACCTGTATCACGAAATTTTTAATGAACCGGAAAGAGAAG 736
BSNT_04444___ 737 ATGTTTTTAAAGCAGCAAGAGCGTTTACTGATCAATATATTTGA 780
||||.|||||.|||||||||||.|||||.|||||||||||||||
BPUM_2683___y 737 ATGTGTTTAAGGCAGCAAGAGCCTTTACAGATCAATATATTTGA 780
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