Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04437 and BPUM_2677
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04437___ytrA.1.24716.seq
# -bsequence dna-align/BPUM_2677___ytrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04437___ytrA-BPUM_2677___ytrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04437___ytrA-BPUM_2677___ytrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04437___ytrA
# 2: BPUM_2677___ytrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 422
# Identity: 285/422 (67.5%)
# Similarity: 285/422 (67.5%)
# Gaps: 37/422 ( 8.8%)
# Score: 960.0
#
#
#=======================================
BSNT_04437___ 1 ---------------------ATGATTCAAATCGATCCAAGAAGCTCAAC 29
|||||||||||.||||||.|||||.|..|
BPUM_2677___y 1 ATGAGGAAAGAGGGAGCCATCATGATTCAAATAGATCCACGAAGCGCTGC 50
BSNT_04437___ 30 ACCCATTTACGAACAAATTATTCAGCAAATGAAAGAGCTT-TGTTTGAAA 78
.||.||.||.||||||||.|||.||| |.|.|||.|..|| |||.|.|||
BPUM_2677___y 51 GCCAATATATGAACAAATCATTGAGC-AGTTAAAAATTTTATGTCTAAAA 99
BSNT_04437___ 79 GGGATCATGAAGCCTGGTGATAAGCTTCCTTCTGTCAGAGAATTGGCGAC 128
||..|.|||||.|||||.||.||.||.||.|||||||||||..|.||.||
BPUM_2677___y 100 GGTGTAATGAAACCTGGAGACAAACTGCCCTCTGTCAGAGAGCTCGCCAC 149
BSNT_04437___ 129 GATCATTATTGCGAATCCGAACACTGTCAGCAAAGCGTATAAAGAGCTTG 178
.||.||.||.||.|||||.|||||.|||||.|||||.|||||.|||||||
BPUM_2677___y 150 TATTATCATCGCCAATCCAAACACCGTCAGTAAAGCATATAAGGAGCTTG 199
BSNT_04437___ 179 AGCGAGAGGGGATTATTGAAACGCTGCGGGGCAGAGGGACCTATATATCG 228
||||.||.||.|||||||||||..|..|.|||.|.||.||.|||.||.|.
BPUM_2677___y 200 AGCGGGAAGGAATTATTGAAACATTAAGAGGCCGCGGAACGTATGTAACA 249
BSNT_04437___ 229 GAGAATGCAAA---AACGACACTGGTTGAAGGGAAGATGACGAT----GA 271
||..|.||..| ||.| |||..||||||||||.| || ||
BPUM_2677___y 250 GAAGAGGCTCAGTTAATG---CTGAATGAAGGGAAGGT----ATTGGAGA 292
BSNT_04437___ 272 TTAAAGAGCAACTCAAACAGCTCATCATCGATGCACACTATGCAGGGGTT 321
|.||.||||||.|.|.|||.||.||.||.||.||.||.|||||.||..||
BPUM_2677___y 293 TGAAGGAGCAATTAAGACAACTTATTATAGAAGCTCATTATGCCGGTATT 342
BSNT_04437___ 322 GAGCTGGAAAAACTGCACGAATGGATAAAGGAAATCAGCGCTGATGTGAA 371
||..|..||.|||||.|.|||||||||.|.||||||.||.|...|.|..|
BPUM_2677___y 343 GATATTCAACAACTGAAGGAATGGATAGAAGAAATCGGCTCAAGTCTTGA 392
BSNT_04437___ 372 GGGAGGCAAAAAAAATGATTGA 393
||||||.||||||..|||||||
BPUM_2677___y 393 GGGAGGAAAAAAAGTTGATTGA 414
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