Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04434 and BPUM_2675
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04434___ytrC.1.24716.seq
# -bsequence dna-align/BPUM_2675___ytrC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04434___ytrC-BPUM_2675___ytrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04434___ytrC-BPUM_2675___ytrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04434___ytrC
# 2: BPUM_2675___ytrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1152
# Identity: 609/1152 (52.9%)
# Similarity: 609/1152 (52.9%)
# Gaps: 324/1152 (28.1%)
# Score: 1317.5
#
#
#=======================================
BSNT_04434___ 1 ATGGTAGACCG--AGGTCTCCTCTATCGAGAGTGGAAGCAGAATCAAGTG 48
||||||.|.|| |..|.| |.|||...||.||||||| |||| ||.|
BPUM_2675___y 1 ATGGTAAAGCGGCAATTAT--TATATAAGGAATGGAAGC--AATC-AGAG 45
BSNT_04434___ 49 GTG--ATTTTGTTAAGT-ATCGTGTTTTTAGTGTTGGCAAATCCTTTAAC 95
.|| ||||..||.||| ||..||.||..|||.||..|.|..||.|||.|
BPUM_2675___y 46 CTGACATTTATTTTAGTGATGCTGGTTGCAGTCTTTACGACGCCATTATC 95
BSNT_04434___ 96 GATTTATC------ACTC---------ATATTCTTTAAACGAGGCATGCC 130
..|||..| |||| |..||.|.|||||||..|
BPUM_2675___y 96 CTTTTTGCTGGGGTACTCGTCCTTTCAAACTTGTGTAAACGACCC----- 140
BSNT_04434___ 131 TAGCACATTCAGATCCG-AAATTTTGTACATTTTTTGTAGATTACCACAT 179
|||||..|.|.||| |.||..| |||.|||.||.||..||
BPUM_2675___y 141 ---CACATGTACAACCGTAGATCAT-TACTTTTATTATAATTT------- 179
BSNT_04434___ 180 AGACAGCT-TGATTCAAATTAATTGGGTGAT---------AGGGATTATA 219
|||.| |||| ||| .|.|| |.|||.||
BPUM_2675___y 180 ---CAGTTCTGAT--------ATT--TTTATCGCCCTCTCATGGACTA-- 214
BSNT_04434___ 220 TTGGCAGTATGTT--------TGATCGGGCT------TGAACGTTCGAGA 255
||| ||.|||| |.|||..||| |||| |||
BPUM_2675___y 215 -TGG--GTTTGTTTTTTGCGATTATCCAGCTGGGATATGAA------AGA 255
BSNT_04434___ 256 GGTACGATGGAC-------TTTTTGTTAGGTCTT-CCATATAAAAGAA-- 295
..|| |.|||| ||||..||....||| ||.|.||..||||
BPUM_2675___y 256 AATA--AAGGACAAATTGATTTTACTTTATCCTTGCCGTTTAGCAGAAGT 303
BSNT_04434___ 296 ACCAAATTTTCCAAACGAAATTTTGGTTAGGCGCGGTTGTTATTGTGTTT 345
||| |||||.||.||.||.||||..|||||.||.| |..||.
BPUM_2675___y 304 ACC--ATTTTTCATACAAAGTTTTTCTTAGGTGCCG--------GAATTA 343
BSNT_04434___ 346 TCGCAATTGGTCGGATTTTTTTTGGCATGGCTGCTGATTCTT-------T 388
||.||.|.|.|| ||.|.||.|...|||.||.|...|.||| |
BPUM_2675___y 344 TCACACTCGTTC--ATGTATTGTCATATGCCTTCACTTACTTACTCATAT 391
BSNT_04434___ 389 T---CTTAAAACCTGAACAAGTAAACTTTT---TTGAACATGGAAG---- 428
| |.|..|||| |.||| |.||.||| ||.| ||.|.||
BPUM_2675___y 392 TAGGCATCCAACC---AAAAG-AGACGTTTGACTTTA--ATAGTAGTTAC 435
BSNT_04434___ 429 --CATTG-----GTGTTATGATCACTAGCATTATGTTTTACTCATTAGTA 471
||||| |||| |||.|.|.|||.|||| ||||
BPUM_2675___y 436 CTCATTGCACTTGTGT--------CTACCCTAATGATTTA-----TAGT- 471
BSNT_04434___ 472 ATG------GCCGCAGGGACGTTAGCTGGAAACGCTTTTGCTCAGTTGTT 515
.|| ||.|||||..|.|||.|.||||.|||..||..|||
BPUM_2675___y 472 TTGTGTCTTGCAGCAGGTGCTTTAACAGGAAGCGCAATTAGTCA------ 515
BSNT_04434___ 516 GACAGCTTTTG-------CA--ACTTCGGTATTGCCGTATTTGATTA--- 553
|||..||| || ||.|||.|||||||.||||| ||||
BPUM_2675___y 516 ---AGCCATTGTCACATTCAGTACATCGATATTGCCATATTT-ATTAATT 561
BSNT_04434___ 554 -------------TCGTTTTG----CCATTTTCTAA---TATAGAGATTA 583
||..|||| ..||||||.|| .|||||
BPUM_2675___y 562 TGGCTTCCGATGTTCCATTTGGATTTTATTTTCAAAACGGATAGA----- 606
BSNT_04434___ 584 TCTCAGGGG----TTCAAATTTGGA----------------AACTCTTCC 613
|||.||| |.|||.|||.|| |..||| |
BPUM_2675___y 607 --TCATGGGTCGATGCAAGTTTTGACCATTTTATTATGCCGATATCT--C 652
BSNT_04434___ 614 CTAACA-TTGAATATTACTTCGATTTTGAAAATAATTTGATGGACTTTTC 662
|||.|| || ||||||| .|||||| |||||....||||
BPUM_2675___y 653 CTATCACTT--ATATTAC--AGATTTT--AAATATCGAGATG-------- 688
BSNT_04434___ 663 TCCAATTG-CTTATGTGGATTCAAGTTGGGTGGCGGAAAGTAAATATTTA 711
|||.|| || ||.|||..|||.|..|.| ||.||.| |
BPUM_2675___y 689 --CAAGTGACT-------ATCCAACATGGTTCACTG---GTGAAGA---A 723
BSNT_04434___ 712 TTACTTATCCCTGCA--GTGATGAGTATTCTCTTTTATTTCATTGGATAT 759
||..|.||.|| || |||||||..|||.|.||||||.|||||||.|..
BPUM_2675___y 724 TTCATCATACC--CATTGTGATGATGATTGTATTTTATCTCATTGGTTTG 771
BSNT_04434___ 760 ATCAGTTTTATAAAACATCATAATGAGCGTAATGGATACTTTTTCTT--- 806
.|.||.|||||.||.||||.||.|||.||.||||| |..||||||
BPUM_2675___y 772 TTTAGCTTTATGAAGCATCCTATTGAACGAAATGG---CCGTTTCTTCCT 818
BSNT_04434___ 807 ----------ATGGAAAACATTAGATCGGCCTATCCAAATCCTTGTCATC 846
||||| |||| ||.||.||.||..|.|||||.
BPUM_2675___y 819 TTACTCAAAAATGGA------TAGA----CCGATTCAGATTTTGGTCATT 858
BSNT_04434___ 847 GTGTTAGGAATCCTGGGTTTTGGTAT-AGTGGGGCATTCTGCGGGTGA-- 893
||.||.||..|.||.||.||||| || .||.||...||||.| |||
BPUM_2675___y 859 GTCTTCGGTGTTCTAGGGTTTGG-ATGGGTTGGATTTTCTTC---TGACA 904
BSNT_04434___ 894 -ATCCATAGCGGGTTACATTATCGGAATGATTATCGGAGGAATTGTAGGA 942
.||||||..||||||.|||.||||.|||||.|||||.||..|||||||
BPUM_2675___y 905 CCTCCATATTGGGTTATATTGTCGGCATGATCATCGGCGGCGTTGTAGG- 953
BSNT_04434___ 943 TTTTTG-----ATCAGTTATTTTTCCATCTTT--AAAAAAGTAAGACATT 985
|| |..||||||||.|..||.|.| |||||..|||
BPUM_2675___y 954 ----TGCACTAACAAGTTATTTCTTAATATATCGAAAAAGATAA------ 993
BSNT_04434___ 986 AA 987
BPUM_2675___y 993 -- 993
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