Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04432 and BPUM_2674
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04432___ytrE.1.24716.seq
# -bsequence dna-align/BPUM_2674___ytrE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04432___ytrE-BPUM_2674___ytrE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04432___ytrE-BPUM_2674___ytrE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04432___ytrE
# 2: BPUM_2674___ytrE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 721
# Identity: 536/721 (74.3%)
# Similarity: 536/721 (74.3%)
# Gaps: 47/721 ( 6.5%)
# Score: 1914.5
#
#
#=======================================
BSNT_04432___ 1 ATGATTGATGTTC-AGCATATCGACCAT-TCTTTCACGATCGGAAAAAAG 48
||||||.|..||| |||.| |.||.||| |.||| |..||.||.||||||
BPUM_2674___y 1 ATGATTCAGATTCAAGCGT-TAGATCATGTGTTT-AAAATTGGTAAAAAG 48
BSNT_04432___ 49 GGCCGTGAGAATGAAGTTCCAGTATTGAA--GGAT----GTTTC-ATTAC 91
|||.|.||||||||..||||.||.||.|| |||| .|.|| ||||
BPUM_2674___y 49 GGCAGAGAGAATGAGATTCCTGTGTTAAAAGGGATTGACTTATCTATTA- 97
BSNT_04432___ 92 GTGTGGCGAA--AGGTGAGATCGCCTGTATTGTCGGGCGAAGCGGCTCAG 139
|| |||.||.||.||.|||||.||.||||||||.|||||.|
BPUM_2674___y 98 --------AAAGAGGCGACATTGCTTGTATAGTGGGGCGAAGTGGCTCGG 139
BSNT_04432___ 140 GGAAATCAACGCTTTTGAATTTGATTTCCGGCTACATATCGCCGACAAAA 189
|||||||.||.||.|||||.||.|||||.||.||.||..|||||||
BPUM_2674___y 140 GGAAATCTACCCTATTGAACTTAATTTCAGGATATATTACGCCGAC---- 185
BSNT_04432___ 190 GGGCGG----ATTGTCATTAATGGCACTGATGTTACGGGGTTTAATGAAA 235
|||||| |||||||||.||||.||.|||||.||.||.||||||||||
BPUM_2674___y 186 GGGCGGACAAATTGTCATTGATGGTACCGATGTGACAGGATTTAATGAAA 235
BSNT_04432___ 236 AGGAATGGGCGCAATTTCGGCTT-GACCATTTTGGTTTTATTTTCCAAAG 284
|.||||||||| .|.|||.|||| ||.||.|||||||||||.||.|||||
BPUM_2674___y 236 AAGAATGGGCG-GACTTCCGCTTAGATCACTTTGGTTTTATCTTTCAAAG 284
BSNT_04432___ 285 TTTTCAGCTCATCCCGGGTTTAACGACGTATGAGAATGTTGAAATGCCGC 334
.|||||..|.|||..|.|.|||||.||||||||.|||||||||.|.||||
BPUM_2674___y 285 CTTTCAATTGATCGGGAGCTTAACAACGTATGAAAATGTTGAACTTCCGC 334
BSNT_04432___ 335 TGGCGTTAAAAGGGATCAAGCCCTCTGAGCGGAA-GCAAAAGGTGCAGGA 383
|..|.||||||||..|.|||||.|||||.||.|| ||.||| ||..|.||
BPUM_2674___y 335 TCACTTTAAAAGGTGTGAAGCCGTCTGAACGAAAGGCGAAA-GTAAATGA 383
BSNT_04432___ 384 CATGCTGAAACGCGTCGGTCTGGAAAACCACGCCGCTCATTATCCGAATG 433
.|||||||||||.||.|||||.|||.|.||.||.|..|||||.|||||||
BPUM_2674___y 384 AATGCTGAAACGAGTAGGTCTAGAACATCATGCAGGGCATTACCCGAATG 433
BSNT_04432___ 434 AACTGTCAGGCGGCCAGCAGCAGCGTGTCAGTATTGCTCGAGCATTGATT 483
|..||||||||||.||||||||||||||.||||||||..||||.||||||
BPUM_2674___y 434 AGTTGTCAGGCGGGCAGCAGCAGCGTGTGAGTATTGCAAGAGCCTTGATT 483
BSNT_04432___ 484 TTAAATCCTTCGATTATCTTAGCGGATGAGCCGACGGGAAGCCTTGATTC 533
||||||||.||.|||||.|||||||||||.||.||.||.||.||.|||||
BPUM_2674___y 484 TTAAATCCATCTATTATTTTAGCGGATGAACCAACAGGCAGTCTAGATTC 533
BSNT_04432___ 534 AGAAACGGAACATGAAGT----GCTGGAATTGATCCAGCAGCTGAATCGT 579
||||||.|||...|||.| ||| ||.|||||||||||.||||||
BPUM_2674___y 534 AGAAACCGAAGGGGAAATTTTAGCT----TTTATCCAGCAGCTCAATCGT 579
BSNT_04432___ 580 GAGCGTGGCATTACATTTGTGATCATTACTCACGATGATGAAGTCGCTTC 629
||....||.||.||||||||.||||||||.||.||.||||||||.|||||
BPUM_2674___y 580 GAAAAAGGAATCACATTTGTCATCATTACACATGACGATGAAGTTGCTTC 629
BSNT_04432___ 630 TATCGGACATTCAAAATTTCAGCTTCATGATGGTGTGCTA---AAAGGAG 676
.||||.|.||.|.|..||||||||.|||||||||||..|| ||||| |
BPUM_2674___y 630 AATCGCAGATACCACGTTTCAGCTCCATGATGGTGTATTAAAGAAAGG-G 678
BSNT_04432___ 677 GAATTA-CCGTTGAGGTTTAA 696
|||..| ||.||||..||||.
BPUM_2674___y 679 GAACAATCCATTGAAATTTAG 699
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