Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04404 and BPUM_2668
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04404___ytaP.1.24716.seq
# -bsequence dna-align/BPUM_2668___ytaP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04404___ytaP-BPUM_2668___ytaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04404___ytaP-BPUM_2668___ytaP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04404___ytaP
# 2: BPUM_2668___ytaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1006
# Identity: 621/1006 (61.7%)
# Similarity: 621/1006 (61.7%)
# Gaps: 182/1006 (18.1%)
# Score: 1715.0
#
#
#=======================================
BSNT_04404___ 1 --------------ATGAGAGCCG--------AAAGAAGAAAG------- 21
|.|||.|.|| |||| |||||
BPUM_2668___y 1 GTGATAACAAAAGGAGGAGTGACGTCAATGGAAAAG--GAAAGCAAACGT 48
BSNT_04404___ 22 ---CAACTGTTTCGATTGCTTGGTGATTTGCCTGATCGGAGGCCAATCAG 68
||||||.|..|..||.|.||.||..||||.||.|| |.||| |
BPUM_2668___y 49 GAACAACTGCTCAGTCTGTTAGGAGAAATGCCAGAACG-----CCATC-G 92
BSNT_04404___ 69 TGTTGAGACAT-TACGTATTGAAGAAAGAGAA----GAA---AATATCGT 110
.||.|||.||| |||| ||.||||..|||.| ||| .||.|.||
BPUM_2668___y 93 CGTGGAGGCATATACG--TTAAAGATCGAGGATCGTGAATCTTATGTAGT 140
BSNT_04404___ 111 TGAAACGCTCCTGCTCGATT---TAAATGGACATGAAAAG---GTGCCCG 154
.|||||.|||.|.|| || |.||||| ||.|.|| |||||||
BPUM_2668___y 141 CGAAACACTCATTCT---TTCAATCAATGG---TGTAGAGGAAGTGCCCG 184
BSNT_04404___ 155 CTTATTTTGTGAAGCCGAAGAAAAC------AGAAGGACC----GTGCCC 194
||||||||||||||||||||.|.|| |.||.|||| ||||
BPUM_2668___y 185 CTTATTTTGTGAAGCCGAAGGATACGGTGAAAAAAAGACCCGTTGTGC-- 232
BSNT_04404___ 195 AGCCGTATTGTTTCAGCATTCGCATGGGGGCCAGTA---TGATAGG--GG 239
|.||||||||.||.|||||.||..|.|| .|||.|| ||
BPUM_2668___y 233 --------TCTTTCAGCACTCTCATGGCGGGAACTACGTCGATGGGAAGG 274
BSNT_04404___ 240 AAAAAGTGAGCTGATTGAGGGAGCGGATTATTT----GAAAACGCCTTCT 285
|| ||.||.||..||||.||..||||||| |||| ||||.
BPUM_2668___y 275 AA-----GAACTCATCAAGGGTGCTCATTATTTGCAAGAAA----CTTCA 315
BSNT_04404___ 286 TTTTCTGATGAGCTTACTTCACTCGGATACGGCGTTCTTGCGATTGATCA 335
|.|.|..|.|||.|.||||||...||.||..|.||.||.||.||.|||||
BPUM_2668___y 316 TATGCGAAAGAGTTCACTTCAAAAGGCTATAGTGTCCTAGCTATCGATCA 365
BSNT_04404___ 336 TTGGGGATTTGGAGATCGGCGGGGAAAAGCGGAAAGCGAGATATTTAAAG 385
||..||||||||.||..|..|.||||.|.|.|||||.||.||.|||||.|
BPUM_2668___y 366 TTCAGGATTTGGTGAGAGAAGAGGAAGAACCGAAAGTGAAATTTTTAAGG 415
BSNT_04404___ 386 AAATGCTTCTCACCGGAAAAGTGATGTGGGGGATGATGATTTATGACAGT 435
||||||||.|.||.||.||||||||||||||.||||||.|.|||||.||
BPUM_2668___y 416 AAATGCTTTTAACAGGGAAAGTGATGTGGGGCATGATGCTGTATGAAAG- 464
BSNT_04404___ 436 TTAAGTGCG--TTAGACTATATGCAGTCACGCTCTGATGTTCAGCCTGAC 483
.|.||||| .|.||.|||.||...||.||.|||||.||.|.|||.|||
BPUM_2668___y 465 -CATGTGCGCAATCGATTATGTGTTATCTCGATCTGACGTGCTGCCGGAC 513
BSNT_04404___ 484 AGGATCGGAACC----ATCGGCATGTCTATGGGAGG-----TTTGATGGC 524
.||.| |.| .|.||.|||||.|||||.|| ||| |
BPUM_2668___y 514 CGGTT----AGCTGTTTTTGGAATGTCAATGGGCGGGCTTCTTT-----C 554
BSNT_04404___ 525 GTGGTGGACAGCGGCGCTCGATGACCG-GATTAAGGTGTGTG--TGGA-- 569
.|||||||||||.|||||.||||| | ||.| .|||||||| |.||
BPUM_2668___y 555 CTGGTGGACAGCTGCGCTTGATGA--GAGAGT-CGGTGTGTGTATTGATC 601
BSNT_04404___ 570 TTTGTGCAGCCAGGTGGATCATCACGTGCTGATCAAAACACAGAATCTTG 619
||||.||| |||||.|||||.|||....|.||..|||||.|.|||||.|
BPUM_2668___y 602 TTTGCGCA--CAGGTCGATCACCACACATTAATTGAAACAAACAATCTAG 649
BSNT_04404___ 620 ACAGGCACGGCTTTTATTATTACGTCCCATCGCTT-GCAAAGCATTTTTC 668
|||||||..||||||||||.||.||.||| .|||| |||||.||.|||.|
BPUM_2668___y 650 ACAGGCATAGCTTTTATTACTATGTACCA-AGCTTAGCAAATCACTTTAC 698
BSNT_04404___ 669 CGCATCGGAGATCC---AAAGCCTGATCGCGCCGCGCCCGCACCTTAGTC 715
.|||.|.||.||.| ||| ||||....||..|.||||| .|||..|
BPUM_2668___y 699 GGCAGCTGATATTCAGGAAA---TGATTTTTCCAAGGCCGCA-TTTAAGC 744
BSNT_04404___ 716 TT-GTTGGTGTACACGATCGGTTAACGCCGGCTGAGGGCGT-GGACAAAA 763
|| |||||...||..||||...|.|||||.|||||.||||| |.||..|.
BPUM_2668___y 745 TTAGTTGGAAAACTTGATCCACTCACGCCTGCTGAAGGCGTCGCACGCAT 794
BSNT_04404___ 764 TCGAAAAAGA-ATTGA---CAGCTGTCTATGCTGGACAGGGAGCTGCT-- 807
|| |||||| ||||| .|.|| ||| || |||.|||
BPUM_2668___y 795 TC--AAAAGAGATTGAGCCAAACT---TAT------CA---AGCGGCTTC 830
BSNT_04404___ 808 -------GATTGCTACCGAG-----TGGTCCGTTC-TGCTTCGGGACATT 844
||..|.||.| || ||||| ||| || |.||.||||
BPUM_2668___y 831 ATTGAAAGAACGGTATC-AGCTTGTTGGTC--TTCATG---CAGGTCATT 874
BSNT_04404___ 845 TCGAAACAGCAGTTATGAGGCATGAAGCTGTCCGGTTTTTGCAAAAGTGG 894
|.||||||||....|||.|.||.||.|||...||.||.||..||||.|||
BPUM_2668___y 875 TTGAAACAGCTACAATGCGTCACGAGGCTACTCGATTCTTAAAAAAATGG 924
BSNT_04404___ 895 CTGTGA 900
||||.|
BPUM_2668___y 925 CTGTAA 930
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