Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04396 and BPUM_2667
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04396.1.24716.seq
# -bsequence dna-align/BPUM_2667___ytbQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04396-BPUM_2667___ytbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04396-BPUM_2667___ytbQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04396
# 2: BPUM_2667___ytbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity: 497/827 (60.1%)
# Similarity: 497/827 (60.1%)
# Gaps: 142/827 (17.2%)
# Score: 1282.0
#
#
#=======================================
BSNT_04396 1 GTGAAAAAAGTGCTGATCGCCGGCGGAAATGGTGTGATTGGGAGACTGCT 50
.||||.| |...||||...||||||..|||||||||.||..|..|..|
BPUM_2667___y 1 ATGAAGA---TCACGATCATTGGCGGATGTGGTGTGATCGGCCGTATTTT 47
BSNT_04396 51 TGCTGAAGGGCTTATTTCAGACTATGAAGTGACAGTGCTTGATAAAGATC 100
..|..|||.|||...|||.||.||.|| |||.|..|||
BPUM_2667___y 48 AACAAAAGCGCTCTCTTCTGAATACGA-------------GATCACTATC 84
BSNT_04396 101 ATTTCGATGGCAA---AGC-CTCT--------TCCATTCAGGCTGACGCG 138
||| ||| ||| ||| .||| | ||||..|||.||.||.
BPUM_2667___y 85 ATT--GAT--CAAACGAGCTGTCTAAAAGGAGT-CATTTTGGCAGATGCA 129
BSNT_04396 139 GCAAATTATGAGGAGCTGT-TGAAGAAGATTCCAAAAGATACCGATGCCA 187
.|.|||.|..||||..|.| || ||..|||.||...||||||.||||.||
BPUM_2667___y 130 ACGAATGAACAGGAATTATATG-AGGCGATCCCGCGAGATACAGATGTCA 178
BSNT_04396 188 TCTTGAATTTACTCGCTGTTAAA-------ATCAAATACGATATTATGGA 230
|| .|||.| ||.||||| ||.|.|.|.|||.|.|||
BPUM_2667___y 179 TC------ATACAC-CTTTTAAACATGGAGATGACACATGATGTGATG-- 219
BSNT_04396 231 CATCGCT---GAGTTTGAAAAAATGACGGATGTTTTCTATAGGGCAAGC- 276
.|||| | ||||||||||||||||..|||.|||| |.||..||||
BPUM_2667___y 220 AATCG-TGAGGAGTTTGAAAAAATGAGTGATATTTT---TTGGAGAAGCT 265
BSNT_04396 277 --TATTATCTGTGCCGTGCGGCAGCGGAGATCGGCATTC-AAAAGCTCGT 323
||||.|.|||..||..|.||.||...|.|.||||||| ||||| ||.|
BPUM_2667___y 266 CTTATTCTATGTTTCGATCAGCTGCAAGGCTTGGCATTCGAAAAG-TCAT 314
BSNT_04396 324 GTTCGCCAGCAGCAATCATGTCACAGAT--TTATACGAAAAAGACGGGCG 371
.||.||.|||||||||||.||.||.||| |||| ||||||||.||.||
BPUM_2667___y 315 TTTTGCAAGCAGCAATCACGTGACCGATCGTTAT--GAAAAAGATGGCCG 362
BSNT_04396 372 CTCGCTCTTAGGACGGGAAATCACAACAAGCGAT-TATCCGCTGTCAAAA 420
.||..|..||||.||..|.||.||||||..|||| ||.|.|| |.|.|||
BPUM_2667___y 363 TTCCTTACTAGGGCGACATATGACAACAGACGATGTACCTGC-GACTAAA 411
BSNT_04396 421 AACTTGTACGGTGTATTAAA----GCTGAGCTCTGAACAGATCGGCCATT 466
||..||||.|||.|.||||| ||| |||||||||.|.||||..|
BPUM_2667___y 412 AATGTGTATGGTATTTTAAAATTTGCT----TCTGAACAGCTAGGCCGGT 457
BSNT_04396 467 TGT-------TTTATTTGGAAAATAAGCTATCAGTAATCAACCTTCGAAT 509
||| |..|..||||| |.||.||.|||||..|.||.||
BPUM_2667___y 458 TGTTCCACGATCAAACTGGAA-------TGTCTGTTATCAATTTGCGGAT 500
BSNT_04396 510 CGGAACAGTCGTGACAGATGAAATGGATACGCTGCATGAAAAAGAACGGA 559
.||||||||.|||||||||||.|||||..|..|.||.||.||||||||||
BPUM_2667___y 501 TGGAACAGTTGTGACAGATGAGATGGAAGCATTACACGAGAAAGAACGGA 550
BSNT_04396 560 CGAAAAAGACACTGCTTTCTCACCCCGATCTGCTGTCGATTTTCAAAGCC 609
|||||...|||||.|||||.||....|||||..|...|||..|.||.||.
BPUM_2667___y 551 CGAAACGAACACTTCTTTCACATGAAGATCTAGTAGGGATAATAAAGGCG 600
BSNT_04396 610 GCCATTGAGACCAACATCCGGTAC-----GGCACTTATTACGCCGTCTCT 654
||.||||| |||..|| ||.| ||.||.||||||||.||.||.
BPUM_2667___y 601 GCAATTGA----AACGGCC-GTGCCCTTTGGAACATATTACGCTGTATCA 645
BSNT_04396 655 GATAATCCGGGCCG-------GCCATGGTCCATTGAATCTGCCGTGAATG 697
||.|| || |||.|||||.|..|||....|...|.|.|
BPUM_2667___y 646 GAAAA-------CGAAGAAAAGCCTTGGTCTACGGAAAACACGAAGCAGG 688
BSNT_04396 698 AACTTGGGTTTTCGCCACAAATC-------AATACGGCCGAACTTC-TGA 739
|| |||| ||.|||||.| ||||||.|.|||.|.| |||
BPUM_2667___y 689 AA-TTGG------GCTACAAACCTCATAAGAATACGACGGAAATCCTTGA 731
BSNT_04396 740 ACGAGGAGGAGAACGGA----GCATAA 762
| || ||..|| |||||.
BPUM_2667___y 732 A-------GA-AAATGATCAGGCATAG 750
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