Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04395 and BPUM_2666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04395___ytcP.1.24716.seq
# -bsequence dna-align/BPUM_2666___ytcP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04395___ytcP-BPUM_2666___ytcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04395___ytcP-BPUM_2666___ytcP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04395___ytcP
# 2: BPUM_2666___ytcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity: 675/887 (76.1%)
# Similarity: 675/887 (76.1%)
# Gaps: 13/887 ( 1.5%)
# Score: 2497.5
#
#
#=======================================
BSNT_04395___ 1 GTGGGAGCTATCGCACATTCACTGAAAAACCGTCTGTTTGA--TATGTTG 48
..||.| ||||..|.|||..|||||..|||..||||..| ||| ||.
BPUM_2666___y 1 --ATGAAC-ATCGATCGTTCTATGAAAGGCCGATTGTTCAACTTAT-TTA 46
BSNT_04395___ 49 ATTTATGGTTTCTTGCTGATGTTCGCTTTAATATGCGTACTTCCGTTCAT 98
|||..|..|||| |.||.||||||||.||||||||.||.|||||||||||
BPUM_2666___y 47 ATTACTCTTTTC-TACTCATGTTCGCATTAATATGTGTGCTTCCGTTCAT 95
BSNT_04395___ 99 TCATGTCATCGCAGCATCTTTCGCCACAGTAGAAGAAGTCGTGTCGAAAA 148
.||||||||.||.||.|||||.||.|||||||||||.|||.|..||||.|
BPUM_2666___y 96 CCATGTCATTGCTGCCTCTTTTGCTACAGTAGAAGAGGTCATCACGAAGA 145
BSNT_04395___ 149 CATTTATTTTAATACCGACCACTTTTTCGCTAGATGCTTATCGCTACATT 198
..|||||.|||.|.||||||||.|||||..||||.||.|||||.||.|||
BPUM_2666___y 146 AGTTTATCTTATTCCCGACCACGTTTTCTTTAGAGGCCTATCGGTATATT 195
BSNT_04395___ 199 TTTTCAACAGATATTATTTATAAGAGTTTGCTTGTTTCTGTGTTTGTGAC 248
||.||.||.||||||.|.||....||..|..||||.||..|..||||.||
BPUM_2666___y 196 TTCTCGACGGATATTGTGTACCGCAGCCTTATTGTGTCCATTCTTGTCAC 245
BSNT_04395___ 249 AGTGATAGGCACTGCGGTCAGCATGTTTCTTTCTTCACTGATGGCTTACG 298
|.|..|.||.||.||.||||||||||||.|.||.|||||.|||||.||.|
BPUM_2666___y 246 ACTCGTTGGAACAGCTGTCAGCATGTTTTTGTCCTCACTCATGGCATATG 295
BSNT_04395___ 299 GGTTATCCCGCCGTGATTTAATCGGCCGGCAG-CCGCTCATGTTTCTCGT 347
||.|.||.||.|..||..|||..|||||| || .|..|.|||||||||||
BPUM_2666___y 296 GGCTGTCTCGTCAGGAGCTAAAAGGCCGG-AGAACATTGATGTTTCTCGT 344
BSNT_04395___ 348 CGTATTTACGATGCTGTTTAGCGGCGGCATGATTCCGACTTTCCTTGTGG 397
.||.||.|||||||||||||||||.||.|||||||||||.||..||||||
BPUM_2666___y 345 TGTCTTCACGATGCTGTTTAGCGGTGGGATGATTCCGACGTTTATTGTGG 394
BSNT_04395___ 398 TCAAATCGCTTGGATTGCTCGATTCTTACTGGGCGCTTATTTTGCCGACA 447
|.|||.|||||||..||||.|||.||||.|||.|.||.|||.|.|||...
BPUM_2666___y 395 TGAAAACGCTTGGTCTGCTTGATACTTATTGGTCACTGATTCTACCGGTT 444
BSNT_04395___ 448 GCCATTAATGCCTTTAACCTGATCATTCTGAAAAACTTCTTTCAAAATAT 497
||.||.|||||.||.||..||||||||.||||||||||.||||||||.||
BPUM_2666___y 445 GCGATCAATGCGTTCAATTTGATCATTTTGAAAAACTTTTTTCAAAACAT 494
BSNT_04395___ 498 CCCGTCAAGCCTGGAAGAGTCCGCGAAAATTGACGGGTGCAATGATCTGG 547
.|||.|||||||.||.||.||.|||||.||.||.||.||.||.|||.|.|
BPUM_2666___y 495 TCCGGCAAGCCTTGAGGAATCAGCGAAGATGGATGGCTGTAACGATTTAG 544
BSNT_04395___ 548 GCATATTCTTTAAAATTGTGCTGCCGCTGTCTCTTCCTGCGATCGCAACG 597
|.||.|||||||||||||||||||||||.|||.|.|||||.||.||.||.
BPUM_2666___y 545 GAATTTTCTTTAAAATTGTGCTGCCGCTTTCTTTGCCTGCTATTGCGACC 594
BSNT_04395___ 598 ATTTCACTATTTTATGCGGTCACGTATTGGAACACGTATATGACAGCGAT 647
||||||||.||||||||.||.|||||||||||.|||||||||||.||.||
BPUM_2666___y 595 ATTTCACTTTTTTATGCCGTGACGTATTGGAATACGTATATGACCGCCAT 644
BSNT_04395___ 648 CTTGTACTTAAACGATTCAGCAAAATGGCCGATTCAGGTGCTTCTGCGCC 697
|.||||.|||||.|||||||..||.|||||||||||||||||.||..|.|
BPUM_2666___y 645 CCTGTATTTAAATGATTCAGTGAAGTGGCCGATTCAGGTGCTGCTAAGGC 694
BSNT_04395___ 698 AAATCGTCATTGTATCAAGCGGTATGCAGGGGGATATGTCTGAAATGGGG 747
|.||.||||||||.||.|||||.|||||.|||||||||||.||.|||||.
BPUM_2666___y 695 AGATTGTCATTGTTTCGAGCGGAATGCAAGGGGATATGTCGGATATGGGA 744
BSNT_04395___ 748 TCGGGCAGCCCGCCGCCTGAGCAAACCATTAAAATGGCGGTCATAGTGGT 797
||...||..||.|||||.||.|||||.|||||||||||.|||||.|||||
BPUM_2666___y 745 TCATCCACACCACCGCCAGACCAAACGATTAAAATGGCTGTCATTGTGGT 794
BSNT_04395___ 798 GGCGACCATCCCGGTTCTGCTTGTCTATCCGTTTATACAAAAGCATTTTG 847
.||.||.||.||.|||||||||||||||||.|||||.|||||||||||
BPUM_2666___y 795 AGCAACGATTCCCGTTCTGCTTGTCTATCCATTTATCCAAAAGCATTT-- 842
BSNT_04395___ 848 CA--AAAGGAGCTTTGCTGGGATCTGTCAAAGGATAA 882
|| |||||.||.||..|.||.|||||.|||||.|||
BPUM_2666___y 843 CAATAAAGGGGCATTATTAGGTTCTGTAAAAGGTTAA 879
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