Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04394 and BPUM_2665
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04394___ytcQ.1.24716.seq
# -bsequence dna-align/BPUM_2665___ytcQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04394___ytcQ-BPUM_2665___ytcQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04394___ytcQ-BPUM_2665___ytcQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04394___ytcQ
# 2: BPUM_2665___ytcQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1541
# Identity: 1114/1541 (72.3%)
# Similarity: 1114/1541 (72.3%)
# Gaps: 85/1541 ( 5.5%)
# Score: 3941.0
#
#
#=======================================
BSNT_04394___ 1 ATGG---GAAACAAATGGAGGGTGCTTTTGATTGTGCTTGTACTG----- 42
|||| ||||.||||...|| |||||||.|.||||.|||
BPUM_2665___y 1 ATGGTGAGAAAGAAATTATGG------TTGATTGCGTTTGTCCTGTTATT 44
BSNT_04394___ 43 -GCACTCGGCGGAGTGCTGGCGG----------GC-TGT------AAAGG 74
||| ||..|||| || ||| |||||
BPUM_2665___y 45 TGCA-----------GCAAGCGGTATTTTATCTGCATGTTCAAGCAAAGG 83
BSNT_04394___ 75 GGC----TGATCAGTCTTCGGCTGAAGGCAAAGCTGGCCCGGATT----- 115
.|| |.||||| |.|.||||.| .||||
BPUM_2665___y 84 AGCAAGTTCATCAG-----------ATGAAAAGGT-----TGATTTAGAC 117
BSNT_04394___ 116 -CAAAGGTAAAGCTGTCTTGGATGGCGATTTTGTATCACCAGCAGCCGCC 164
.|||.|||||||||.|.||||||||||||.|.|||||.|||||||||||
BPUM_2665___y 118 AAAAAAGTAAAGCTGACATGGATGGCGATTCTCTATCATCAGCAGCCGCC 167
BSNT_04394___ 165 GAAAGACAGGGCGATTAAAGAAATTGAAAAGCTGACAAATACAGAACTCG 214
||||||...||...|.|||||.|||||.|||||.|||||.||||||||.|
BPUM_2665___y 168 GAAAGATTCGGTTTTAAAAGAGATTGAGAAGCTCACAAACACAGAACTTG 217
BSNT_04394___ 215 ACATCACCTGGGTTCCAGACGCGGTGAAAGAAGACAGGCTGAATGCGGCG 264
|.||.||.|||||.||.||.||.|||||.||||||.||.|||||.|.||.
BPUM_2665___y 218 ATATTACGTGGGTGCCTGATGCTGTGAAGGAAGACCGGTTGAATTCTGCA 267
BSNT_04394___ 265 CTTGCAGCGGGCAATCTTCCGCAAATCGTGACGATCCAGGATATTAAAAA 314
|||||.||.||.|||.|.|||||.|||||||||||.||.||.|||||.||
BPUM_2665___y 268 CTTGCCGCAGGAAATTTGCCGCAGATCGTGACGATTCAAGACATTAAGAA 317
BSNT_04394___ 315 TTCGTCAGTCATGAATGCCTTCCGGTCAGGAATGTTCTGGGAAATCGGTG 364
||||||.|..||.|||||.|||.|.|||||.||||||||||||.|||||.
BPUM_2665___y 318 TTCGTCTGCTATTAATGCGTTCAGATCAGGTATGTTCTGGGAAGTCGGTC 367
BSNT_04394___ 365 ATTATATCAAGGATTATCCCAACTTAAACAAAATGAACAAACTCATTAAT 414
..|||.|.|||||||||||.||.||||..||.|||||||||||.||||||
BPUM_2665___y 368 CGTATTTAAAGGATTATCCAAATTTAAGTAAGATGAACAAACTGATTAAT 417
BSNT_04394___ 415 AAAAATGTGACAATTGACGGCAAGCTCTACGGGATATACAGAGAGCGCCC 464
|||||||...|.||.||.||.|||||.||.||.||.||.||||||.|.||
BPUM_2665___y 418 AAAAATGCCTCTATAGATGGTAAGCTTTATGGCATTTATAGAGAGAGACC 467
BSNT_04394___ 465 GCTTTCCAGACAGGGGATTGTCATTCGGAAGGACTGGCTGGACAATTTAA 514
.|||||.|||||.||.|||||||||||.|||||.|||||.||.|||||||
BPUM_2665___y 468 ACTTTCAAGACAAGGAATTGTCATTCGAAAGGATTGGCTTGAAAATTTAA 517
BSNT_04394___ 515 ATCTGAAAACCCCGAAAACGTTGGATGAGCTTTATGAAGTGGCCAAAGCA 564
||.||.|.||.||.||||||||||||||.||||||||.||.||.|||||.
BPUM_2665___y 518 ATTTGGATACACCAAAAACGTTGGATGATCTTTATGAGGTAGCGAAAGCT 567
BSNT_04394___ 565 TTTACGGAGGACGACCCGGA-CAAGGATGGGAAAGATGATACATTCGGGC 613
|||||.||..|.||.|||.| ||| .|.||.||||..||||||.|.||..
BPUM_2665___y 568 TTTACTGAAAAAGATCCGAATCAA-AACGGAAAAGCGGATACAATTGGCT 616
BSNT_04394___ 614 TGGCAGACCGTAATGACTTGATTTACGGCGCGTTTAAAACGATTGGCTCG 663
|..|.||.||.||.||.||||||||.||.||.||||||||..||||.||.
BPUM_2665___y 617 TTACGGATCGGAACGATTTGATTTATGGGGCATTTAAAACACTTGGTTCA 666
BSNT_04394___ 664 TATGAAGGCATGCCGACAGATTGGAAGGAATCGGGCGGCAAATTCACGCC 713
|||||.||.|||||.|||||.|||||.|||..|..|||||||||||||||
BPUM_2665___y 667 TATGAGGGAATGCCAACAGACTGGAAAGAAGAGAACGGCAAATTCACGCC 716
BSNT_04394___ 714 TGATTTCATGACACAGGAATACAAAGACACAATGAACTATATGAAAAAGC 763
.|||||.||||||.|.||.||.|...|.||.|||||.|||||||||||..
BPUM_2665___y 717 AGATTTTATGACAGATGAGTATATGAATACGATGAAGTATATGAAAAAAT 766
BSNT_04394___ 764 TGCGTGATAACGGGTATATGAATAAGGATTTTCCCGTCACAAGCAAAACC 813
|.||||||||.||.|||||.||.||.||.||.||.||.|||||||||||.
BPUM_2665___y 767 TACGTGATAATGGCTATATCAACAAAGACTTCCCTGTGACAAGCAAAACG 816
BSNT_04394___ 814 CAGCAGCAGGAGCTGTTTTCGCAAGGAAAAGCCGGAATTTATATTGGCAA 863
|||||.|||||..|.||.||.|||||||||||.||.||.|||.||||.||
BPUM_2665___y 817 CAGCAACAGGAATTATTCTCACAAGGAAAAGCAGGGATCTATGTTGGAAA 866
BSNT_04394___ 864 TATGGTAGATGCGGTCAATCTGCGCGACCATGCCTCTGATAAATCGATGA 913
|||||||||.||.||.||..||.|.||..|.||..|.||||||...||||
BPUM_2665___y 867 TATGGTAGACGCAGTGAACTTGAGAGATGACGCGACAGATAAAAACATGA 916
BSNT_04394___ 914 AGCTCGAGATCGTCAACCGTATAAAAGGCCCAGATGGGAAAGAGCGGGTA 963
|..||||.||..|.|||||.||.||||||||||||||.|||||.||.|||
BPUM_2665___y 917 AAGTCGATATACTGAACCGAATTAAAGGCCCAGATGGCAAAGAACGAGTA 966
BSNT_04394___ 964 TGGGCATCAGGAGGCCATAACGGCGTGTTTGCTTTCCCGAAAACGAGTGT 1013
|||||||||||.||.|||||.|||.|.||.||.|||||.|||||.||.||
BPUM_2665___y 967 TGGGCATCAGGTGGTCATAATGGCATCTTCGCATTCCCTAAAACAAGCGT 1016
BSNT_04394___ 1014 GAAAACGGAAGCTGAGCTTAAA-CGGATCTTGGCTTTTTTTGACCGAATT 1062
||||.|.||.||.|| .||||| ||.||.||.||.||.|||||.||.|||
BPUM_2665___y 1017 GAAATCAGAGGCAGA-ATTAAAGCGAATTTTAGCCTTCTTTGATCGCATT 1065
BSNT_04394___ 1063 GCCGAAGAAGATGTCTATAGCCTGATGACTTATGGCATTGACGGCGTTCA 1112
||.|||||||||||||||.|.||.|||||.||.||.||.||.||.|..||
BPUM_2665___y 1066 GCAGAAGAAGATGTCTATGGTCTCATGACGTACGGTATAGATGGTGAGCA 1115
BSNT_04394___ 1113 TTACAACAAAGGTGAGGACAAAACGT---TCACACGCAAAGAAAGCCAGG 1159
|||.||.||||..||.|..||.||.| ||| |..||||||||||.|
BPUM_2665___y 1116 TTATAAGAAAGAAGAAGGGAATACATTTGTCA---GGGAAGAAAGCCAAG 1162
BSNT_04394___ 1160 T-AAAAGACTGGCAGACTGATATTCAGCCGC-TGTCCGCCTTAATTGCCA 1207
| ||||| |||||||||.|||.|.||||||| ||||.|.| ||.|.|.||
BPUM_2665___y 1163 TGAAAAG-CTGGCAGACAGATGTACAGCCGCTTGTCAGTC-TAGTAGGCA 1210
BSNT_04394___ 1208 TTGATAAAGCCTACTTAAAAAACACTGGAGATCCGCTTCGGACGGCGTAC 1257
||||||||...|||||.|||||.|..||.|||.||.||||.||....||.
BPUM_2665___y 1211 TTGATAAACGGTACTTGAAAAATAAAGGGGATGCGGTTCGTACAAAATAT 1260
BSNT_04394___ 1258 GAGGAGCT-GACCGAGGACAATGAAAAGATTATCGTCTCAAACCCGGCTG 1306
||.||||| || .||.|||||..|||||||.||||||.|.|||||.||||
BPUM_2665___y 1261 GAAGAGCTAGA-AGAAGACAACCAAAAGATCATCGTCGCCAACCCTGCTG 1309
BSNT_04394___ 1307 AAAGCCTTTATTCCGCATCGGAGTCGGAACGGGGGGATGAACTGAAGAAA 1356
|||||||.|||||.|.|.|.|..||.|||||.||..|||||.||||.|||
BPUM_2665___y 1310 AAAGCCTGTATTCAGAAACAGCCTCAGAACGAGGAAATGAATTGAAAAAA 1359
BSNT_04394___ 1357 ATCATTGATGACGCGACTTATAAATATATGATTGGAGACATCACAGAAAG 1406
|||||||||||.|||||.|||||.|..||..|.||||||||||..|||..
BPUM_2665___y 1360 ATCATTGATGATGCGACCTATAAGTTCATTCTGGGAGACATCAGTGAAGA 1409
BSNT_04394___ 1407 CCAGTTCGATAAAGAAGTGGAAAAATGGGAGTCAAGCGGAGGAAAACAAA 1456
.||.||..|.|||||.||.||.||.|||.|.||||..||.||.||..|||
BPUM_2665___y 1410 TCAATTTAAGAAAGATGTAGAGAAGTGGAAATCAAATGGCGGTAATAAAA 1459
BSNT_04394___ 1457 TTATTCAGGAATACGAAGAAGCATTTAAACAAACAAAATAA 1497
|.|||.|.|||||.||||...|.|||||..||.||||||||
BPUM_2665___y 1460 TCATTGAAGAATATGAAGCTTCTTTTAAGAAATCAAAATAA 1500
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