Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04394 and BPUM_2665

See Amino acid alignment / Visit BSNT_04394 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_04394___ytcQ.1.24716.seq
#    -bsequence dna-align/BPUM_2665___ytcQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04394___ytcQ-BPUM_2665___ytcQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04394___ytcQ-BPUM_2665___ytcQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04394___ytcQ
# 2: BPUM_2665___ytcQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1541
# Identity:    1114/1541 (72.3%)
# Similarity:  1114/1541 (72.3%)
# Gaps:          85/1541 ( 5.5%)
# Score: 3941.0
# 
#
#=======================================

BSNT_04394___      1 ATGG---GAAACAAATGGAGGGTGCTTTTGATTGTGCTTGTACTG-----     42
                     ||||   ||||.||||...||      |||||||.|.||||.|||     
BPUM_2665___y      1 ATGGTGAGAAAGAAATTATGG------TTGATTGCGTTTGTCCTGTTATT     44

BSNT_04394___     43 -GCACTCGGCGGAGTGCTGGCGG----------GC-TGT------AAAGG     74
                      |||           ||..||||          || |||      |||||
BPUM_2665___y     45 TGCA-----------GCAAGCGGTATTTTATCTGCATGTTCAAGCAAAGG     83

BSNT_04394___     75 GGC----TGATCAGTCTTCGGCTGAAGGCAAAGCTGGCCCGGATT-----    115
                     .||    |.|||||           |.|.||||.|     .||||     
BPUM_2665___y     84 AGCAAGTTCATCAG-----------ATGAAAAGGT-----TGATTTAGAC    117

BSNT_04394___    116 -CAAAGGTAAAGCTGTCTTGGATGGCGATTTTGTATCACCAGCAGCCGCC    164
                      .|||.|||||||||.|.||||||||||||.|.|||||.|||||||||||
BPUM_2665___y    118 AAAAAAGTAAAGCTGACATGGATGGCGATTCTCTATCATCAGCAGCCGCC    167

BSNT_04394___    165 GAAAGACAGGGCGATTAAAGAAATTGAAAAGCTGACAAATACAGAACTCG    214
                     ||||||...||...|.|||||.|||||.|||||.|||||.||||||||.|
BPUM_2665___y    168 GAAAGATTCGGTTTTAAAAGAGATTGAGAAGCTCACAAACACAGAACTTG    217

BSNT_04394___    215 ACATCACCTGGGTTCCAGACGCGGTGAAAGAAGACAGGCTGAATGCGGCG    264
                     |.||.||.|||||.||.||.||.|||||.||||||.||.|||||.|.||.
BPUM_2665___y    218 ATATTACGTGGGTGCCTGATGCTGTGAAGGAAGACCGGTTGAATTCTGCA    267

BSNT_04394___    265 CTTGCAGCGGGCAATCTTCCGCAAATCGTGACGATCCAGGATATTAAAAA    314
                     |||||.||.||.|||.|.|||||.|||||||||||.||.||.|||||.||
BPUM_2665___y    268 CTTGCCGCAGGAAATTTGCCGCAGATCGTGACGATTCAAGACATTAAGAA    317

BSNT_04394___    315 TTCGTCAGTCATGAATGCCTTCCGGTCAGGAATGTTCTGGGAAATCGGTG    364
                     ||||||.|..||.|||||.|||.|.|||||.||||||||||||.|||||.
BPUM_2665___y    318 TTCGTCTGCTATTAATGCGTTCAGATCAGGTATGTTCTGGGAAGTCGGTC    367

BSNT_04394___    365 ATTATATCAAGGATTATCCCAACTTAAACAAAATGAACAAACTCATTAAT    414
                     ..|||.|.|||||||||||.||.||||..||.|||||||||||.||||||
BPUM_2665___y    368 CGTATTTAAAGGATTATCCAAATTTAAGTAAGATGAACAAACTGATTAAT    417

BSNT_04394___    415 AAAAATGTGACAATTGACGGCAAGCTCTACGGGATATACAGAGAGCGCCC    464
                     |||||||...|.||.||.||.|||||.||.||.||.||.||||||.|.||
BPUM_2665___y    418 AAAAATGCCTCTATAGATGGTAAGCTTTATGGCATTTATAGAGAGAGACC    467

BSNT_04394___    465 GCTTTCCAGACAGGGGATTGTCATTCGGAAGGACTGGCTGGACAATTTAA    514
                     .|||||.|||||.||.|||||||||||.|||||.|||||.||.|||||||
BPUM_2665___y    468 ACTTTCAAGACAAGGAATTGTCATTCGAAAGGATTGGCTTGAAAATTTAA    517

BSNT_04394___    515 ATCTGAAAACCCCGAAAACGTTGGATGAGCTTTATGAAGTGGCCAAAGCA    564
                     ||.||.|.||.||.||||||||||||||.||||||||.||.||.|||||.
BPUM_2665___y    518 ATTTGGATACACCAAAAACGTTGGATGATCTTTATGAGGTAGCGAAAGCT    567

BSNT_04394___    565 TTTACGGAGGACGACCCGGA-CAAGGATGGGAAAGATGATACATTCGGGC    613
                     |||||.||..|.||.|||.| ||| .|.||.||||..||||||.|.||..
BPUM_2665___y    568 TTTACTGAAAAAGATCCGAATCAA-AACGGAAAAGCGGATACAATTGGCT    616

BSNT_04394___    614 TGGCAGACCGTAATGACTTGATTTACGGCGCGTTTAAAACGATTGGCTCG    663
                     |..|.||.||.||.||.||||||||.||.||.||||||||..||||.||.
BPUM_2665___y    617 TTACGGATCGGAACGATTTGATTTATGGGGCATTTAAAACACTTGGTTCA    666

BSNT_04394___    664 TATGAAGGCATGCCGACAGATTGGAAGGAATCGGGCGGCAAATTCACGCC    713
                     |||||.||.|||||.|||||.|||||.|||..|..|||||||||||||||
BPUM_2665___y    667 TATGAGGGAATGCCAACAGACTGGAAAGAAGAGAACGGCAAATTCACGCC    716

BSNT_04394___    714 TGATTTCATGACACAGGAATACAAAGACACAATGAACTATATGAAAAAGC    763
                     .|||||.||||||.|.||.||.|...|.||.|||||.|||||||||||..
BPUM_2665___y    717 AGATTTTATGACAGATGAGTATATGAATACGATGAAGTATATGAAAAAAT    766

BSNT_04394___    764 TGCGTGATAACGGGTATATGAATAAGGATTTTCCCGTCACAAGCAAAACC    813
                     |.||||||||.||.|||||.||.||.||.||.||.||.|||||||||||.
BPUM_2665___y    767 TACGTGATAATGGCTATATCAACAAAGACTTCCCTGTGACAAGCAAAACG    816

BSNT_04394___    814 CAGCAGCAGGAGCTGTTTTCGCAAGGAAAAGCCGGAATTTATATTGGCAA    863
                     |||||.|||||..|.||.||.|||||||||||.||.||.|||.||||.||
BPUM_2665___y    817 CAGCAACAGGAATTATTCTCACAAGGAAAAGCAGGGATCTATGTTGGAAA    866

BSNT_04394___    864 TATGGTAGATGCGGTCAATCTGCGCGACCATGCCTCTGATAAATCGATGA    913
                     |||||||||.||.||.||..||.|.||..|.||..|.||||||...||||
BPUM_2665___y    867 TATGGTAGACGCAGTGAACTTGAGAGATGACGCGACAGATAAAAACATGA    916

BSNT_04394___    914 AGCTCGAGATCGTCAACCGTATAAAAGGCCCAGATGGGAAAGAGCGGGTA    963
                     |..||||.||..|.|||||.||.||||||||||||||.|||||.||.|||
BPUM_2665___y    917 AAGTCGATATACTGAACCGAATTAAAGGCCCAGATGGCAAAGAACGAGTA    966

BSNT_04394___    964 TGGGCATCAGGAGGCCATAACGGCGTGTTTGCTTTCCCGAAAACGAGTGT   1013
                     |||||||||||.||.|||||.|||.|.||.||.|||||.|||||.||.||
BPUM_2665___y    967 TGGGCATCAGGTGGTCATAATGGCATCTTCGCATTCCCTAAAACAAGCGT   1016

BSNT_04394___   1014 GAAAACGGAAGCTGAGCTTAAA-CGGATCTTGGCTTTTTTTGACCGAATT   1062
                     ||||.|.||.||.|| .||||| ||.||.||.||.||.|||||.||.|||
BPUM_2665___y   1017 GAAATCAGAGGCAGA-ATTAAAGCGAATTTTAGCCTTCTTTGATCGCATT   1065

BSNT_04394___   1063 GCCGAAGAAGATGTCTATAGCCTGATGACTTATGGCATTGACGGCGTTCA   1112
                     ||.|||||||||||||||.|.||.|||||.||.||.||.||.||.|..||
BPUM_2665___y   1066 GCAGAAGAAGATGTCTATGGTCTCATGACGTACGGTATAGATGGTGAGCA   1115

BSNT_04394___   1113 TTACAACAAAGGTGAGGACAAAACGT---TCACACGCAAAGAAAGCCAGG   1159
                     |||.||.||||..||.|..||.||.|   |||   |..||||||||||.|
BPUM_2665___y   1116 TTATAAGAAAGAAGAAGGGAATACATTTGTCA---GGGAAGAAAGCCAAG   1162

BSNT_04394___   1160 T-AAAAGACTGGCAGACTGATATTCAGCCGC-TGTCCGCCTTAATTGCCA   1207
                     | ||||| |||||||||.|||.|.||||||| ||||.|.| ||.|.|.||
BPUM_2665___y   1163 TGAAAAG-CTGGCAGACAGATGTACAGCCGCTTGTCAGTC-TAGTAGGCA   1210

BSNT_04394___   1208 TTGATAAAGCCTACTTAAAAAACACTGGAGATCCGCTTCGGACGGCGTAC   1257
                     ||||||||...|||||.|||||.|..||.|||.||.||||.||....||.
BPUM_2665___y   1211 TTGATAAACGGTACTTGAAAAATAAAGGGGATGCGGTTCGTACAAAATAT   1260

BSNT_04394___   1258 GAGGAGCT-GACCGAGGACAATGAAAAGATTATCGTCTCAAACCCGGCTG   1306
                     ||.||||| || .||.|||||..|||||||.||||||.|.|||||.||||
BPUM_2665___y   1261 GAAGAGCTAGA-AGAAGACAACCAAAAGATCATCGTCGCCAACCCTGCTG   1309

BSNT_04394___   1307 AAAGCCTTTATTCCGCATCGGAGTCGGAACGGGGGGATGAACTGAAGAAA   1356
                     |||||||.|||||.|.|.|.|..||.|||||.||..|||||.||||.|||
BPUM_2665___y   1310 AAAGCCTGTATTCAGAAACAGCCTCAGAACGAGGAAATGAATTGAAAAAA   1359

BSNT_04394___   1357 ATCATTGATGACGCGACTTATAAATATATGATTGGAGACATCACAGAAAG   1406
                     |||||||||||.|||||.|||||.|..||..|.||||||||||..|||..
BPUM_2665___y   1360 ATCATTGATGATGCGACCTATAAGTTCATTCTGGGAGACATCAGTGAAGA   1409

BSNT_04394___   1407 CCAGTTCGATAAAGAAGTGGAAAAATGGGAGTCAAGCGGAGGAAAACAAA   1456
                     .||.||..|.|||||.||.||.||.|||.|.||||..||.||.||..|||
BPUM_2665___y   1410 TCAATTTAAGAAAGATGTAGAGAAGTGGAAATCAAATGGCGGTAATAAAA   1459

BSNT_04394___   1457 TTATTCAGGAATACGAAGAAGCATTTAAACAAACAAAATAA   1497
                     |.|||.|.|||||.||||...|.|||||..||.||||||||
BPUM_2665___y   1460 TCATTGAAGAATATGAAGCTTCTTTTAAGAAATCAAAATAA   1500


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