Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04241 and BPUM_2664

See Amino acid alignment / Visit BSNT_04241 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_04241___ytbE.1.24716.seq
#    -bsequence dna-align/BPUM_2664___ytbE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04241___ytbE-BPUM_2664___ytbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04241___ytbE-BPUM_2664___ytbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04241___ytbE
# 2: BPUM_2664___ytbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity:     593/879 (67.5%)
# Similarity:   593/879 (67.5%)
# Gaps:          75/879 ( 8.5%)
# Score: 1884.0
# 
#
#=======================================

BSNT_04241___      1 ATGACAACA-CATTTACAA---GCAAAAGCAACACTTCATAATGGGGTAG     46
                     ||||    | |||||||||   .||||   ||||.|..|.|||||.||..
BPUM_2664___y      1 ATGA----ATCATTTACAAAGTACAAA---AACATTAAACAATGGAGTCC     43

BSNT_04241___     47 AAATGCCTTGGTTCGGCCTCGGCGTGTTCCAAGTGGAAGAAGGATCTGAA     96
                     |.|||||..|.||.||.||.||.||.|||.|.||||||||.||..|.|||
BPUM_2664___y     44 ACATGCCAGGATTTGGTCTTGGTGTATTCAAGGTGGAAGATGGCGCAGAA     93

BSNT_04241___     97 CTGGTAAACGCAGTTAAAACTGCCATTGTTCA---CGGGTACCGCAGTAT    143
                     .|..||.||||.||.|||||.||||   ||||   .||.||.||||||||
BPUM_2664___y     94 TTAATAGACGCCGTCAAAACAGCCA---TTCAATTAGGCTATCGCAGTAT    140

BSNT_04241___    144 TGATACTGCAGCAATCTATGGAAATGAAGCTGGAGTCGGAGAAGGGATTC    193
                     ||||||.||.||.||.|||||.|||||.|..||.||||||..|||.||.|
BPUM_2664___y    141 TGATACAGCGGCTATTTATGGCAATGAGGAAGGGGTCGGACGAGGCATAC    190

BSNT_04241___    194 GGGAAGGCATTGAAGAAGCAGGCATT--TCAAGAGAGGATCTGTTTATCA    241
                     .|...||..|||.||||.||||..||  ||  |.||.|||||.|||.|.|
BPUM_2664___y    191 AGCTTGGTCTTGCAGAAACAGGACTTCGTC--GCGAAGATCTTTTTGTGA    238

BSNT_04241___    242 CATCGAAAGTATGGAATGCGGATTTAGGCTACGAAGAAACACTCGCCGCG    291
                     ||||.|||||.||||||||.||||||||.||.|||...||.||....||.
BPUM_2664___y    239 CATCAAAAGTGTGGAATGCCGATTTAGGATATGAATCCACGCTAAAAGCA    288

BSNT_04241___    292 TTTGAAACAAGTCTGTCCAAAC-TCGGTCTGGATTATTTGGATCTATACC    340
                     |.|||...|||..||...|||| ||.| ||.||.||..|.||||||||..
BPUM_2664___y    289 TATGAGGAAAGCTTGAAAAAACTTCAG-CTTGACTACCTTGATCTATATT    337

BSNT_04241___    341 TCATCCACTGGCCTGTAGAAGGAAAGTATAAAGAAGCTTGGAGAGCGCTT    390
                     |.|||||.|||||.||.||.|||||.||||||||.||||||.|.||||||
BPUM_2664___y    338 TAATCCATTGGCCGGTTGAGGGAAAATATAAAGACGCTTGGCGTGCGCTT    387

BSNT_04241___    391 GAAACGCTGTAT----AAAG-AAGGCCGTATCAAAGCGATTGGCGTAAGC    435
                     ||||||.|||||    ||.| ||||     |||.|||.|||||.||.|||
BPUM_2664___y    388 GAAACGTTGTATCGTGAAGGAAAGG-----TCAGAGCCATTGGTGTGAGC    432

BSNT_04241___    436 AACTTCCAAATTCACCATCTTGAAGATCT-------GATGACGGCAGCTG    478
                     ||||||||....||.|||||.||.||.||       |||       ||.|
BPUM_2664___y    433 AACTTCCAGCCGCATCATCTAGACGAACTATTAAAAGAT-------GCAG    475

BSNT_04241___    479 AAATTA----AGCCTATGATTAACCAAGTGGAATTTCACCCGCGCCTCAC    524
                     |.||.|    ||||    ||.||.||||||||.||||||||....||.||
BPUM_2664___y    476 ACATCATACCAGCC----ATCAATCAAGTGGAGTTTCACCCAAAACTGAC    521

BSNT_04241___    525 ACAAAAAG-AGTTGATAAGATACTGCCAAAATCAGGGCATCCAGATGGAG    573
                     .||..||| |.||.|||.| ||.|...|.|..||.|||||.||.|||||.
BPUM_2664___y    522 GCAGGAAGCACTTTATACG-TATTTGAACACACATGGCATTCAAATGGAA    570

BSNT_04241___    574 GCTTGGTCACCTTTAATGCAGGGACAGCTGCTGGATCACCCTGT------    617
                     ||.||||||||..|.||||||||..|.|||||..||||.||.||      
BPUM_2664___y    571 GCATGGTCACCGCTCATGCAGGGGGAACTGCTTCATCATCCGGTGATCAA    620

BSNT_04241___    618 ---ATTGGCTGACATCGCTCAAACATATAATAAATCTGTCGCACAAATTA    664
                        |.||||.|||         |||||....|||.|...|||.|||||||
BPUM_2664___y    621 AGAACTGGCAGAC---------ACATACGGCAAAACACCCGCTCAAATTA    661

BSNT_04241___    665 TTTTGCGCTGGGATCTGCAGCATGGCATCATTACGATTCCTAAATCAACG    714
                     ||||||||||||||.||||..|.||..||||.||.|||||.|||||||||
BPUM_2664___y    662 TTTTGCGCTGGGATGTGCAAAAAGGTGTCATCACCATTCCAAAATCAACG    711

BSNT_04241___    715 AAGGAACACCGCATTAAAGAAAATGCAAGCGTATTTGACTTTGAATTAAC    764
                     ||.|..||.||..|.||||||||||||..|.|||||||.||||.||||.|
BPUM_2664___y    712 AAAGCGCATCGTTTAAAAGAAAATGCAGACATATTTGATTTTGCATTATC    761

BSNT_04241___    765 GCAGGATGACATGAACCGAATCGATGCACTGAATGAAAACTTGCGCGTCG    814
                     ..|.||.||.|||||.||..|...||...|.|||||||||...||..|||
BPUM_2664___y    762 TGATGAGGATATGAAACGCCTGTCTGATTTAAATGAAAACAAACGTATCG    811

BSNT_04241___    815 GTCCTGATCCGGACAACTTTGATTTTTAA    843
                     ||||.||.||.|||||||||||.||||||
BPUM_2664___y    812 GTCCAGACCCAGACAACTTTGACTTTTAA    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04241 and BPUM_2664

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
