Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04388 and BPUM_2659
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04388___yteR.1.24716.seq
# -bsequence dna-align/BPUM_2659___yteR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04388___yteR-BPUM_2659___yteR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04388___yteR-BPUM_2659___yteR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04388___yteR
# 2: BPUM_2659___yteR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1177
# Identity: 791/1177 (67.2%)
# Similarity: 791/1177 (67.2%)
# Gaps: 128/1177 (10.9%)
# Score: 2450.5
#
#
#=======================================
BSNT_04388___ 1 ATGGATCAATCAATCG-CTGTAAA---ATCGCCTCTTACGTACGCGGAGG 46
||| .||.| |||| |||.||| |||.||.|||..|.|.||.|||.
BPUM_2659___y 1 ATG--ACATT--ATCGACTGAAAAAGGATCACCACTTGAGCATGCAGAGA 46
BSNT_04388___ 47 CATTGGCAAAAACCATTATGAATACG--TACACAGTCGA-GGAGCTGCCT 93
.|||.|||.||||.||||||||..|| ||||| |.| ||.|||||||
BPUM_2659___y 47 AATTAGCACAAACAATTATGAAAGCGCATACAC---CAATGGGGCTGCCT 93
BSNT_04388___ 94 C---CTGCAAACCGCTGGCACTACCATCAGGGTG-TTTTCTTATGCGGTG 139
| |||.|| |.|||||.||.|||||.||.| ||||||| |||||||
BPUM_2659___y 94 CCAGCTGGAA---GATGGCATTATCATCAAGGCGTTTTTCTT-TGCGGTG 139
BSNT_04388___ 140 TATTGCGGCTGTGGGAAGCAACCGGGGAA-AAGCGGTATTTTGAGTATGC 188
|..||..|||.|..| ||..|.||||||| .||..||||||..|.||||.
BPUM_2659___y 140 TGATGAAGCTATATG-AGTTAACGGGGAACGAGACGTATTTCAATTATGT 188
BSNT_04388___ 189 GAAGGCCTATGCAGAT---CTCTTAATCGATGATTATGGCAATCTATTAT 235
|||...|||.|||||| ||| ||.|||||.|||||.||.||.||||
BPUM_2659___y 189 GAAAAGCTACGCAGATTCGCTC---ATTGATGAGTATGGAAACCTGTTAT 235
BSNT_04388___ 236 TTAGAAGAGATGAACTGGACGCCATTCAAGCTGGTCTCATTCTTTTTC-- 283
|..|.||||||||.||.||.||.||.|||||.||.|||||| ||.|||
BPUM_2659___y 236 TCCGGAGAGATGAGCTTGATGCGATCCAAGCAGGGCTCATT-TTATTCCC 284
BSNT_04388___ 284 -CATTAT--ACGAGCAGACGAAGGATGAA-CGGTATGTCAAAGCGGCAAA 329
|.|||| ||||.|||..|| ||| ||||||||....||.|||.|
BPUM_2659___y 285 TCTTTATGAACGAACAGGAGA-----GAAGCGGTATGTGCTGGCAGCAGA 329
BSNT_04388___ 330 AAGGCTGCGC-GGCTTATATAGAACACTGAACCGGACGTCTGAGGGCGGT 378
.|.|||.||| ||||| |||.|.|||.||||.||.||||||||.||.||.
BPUM_2659___y 330 GAAGCTCCGCGGGCTT-TATCGCACATTGAATCGCACGTCTGAAGGTGGA 378
BSNT_04388___ 379 TTTTGGCACAAAGACGGTTATCCATACCAAATGTGGCTTGACGGCTTATA 428
||||||||.||||||..||||.|.||.|||||||||||.||.||..|.||
BPUM_2659___y 379 TTTTGGCATAAAGACAATTATGCTTATCAAATGTGGCTGGATGGTCTCTA 428
BSNT_04388___ 429 CATGGGGGGGCCGTTCGCACTGAAATATGCCAATCTGAAGCAGG---AGC 475
||||||.||.||.||.||..|.||.|||||.||.||||| ||| ||
BPUM_2659___y 429 CATGGGAGGACCCTTTGCGTTAAAGTATGCAAAGCTGAA--AGGTGAAG- 475
BSNT_04388___ 476 CGGAGCTGTTTGATCAGGTCGTGCTGCAGGAGTCAT-TGATGAGAAAGCA 524
.|||..||.|.|||..|||..|.|..||.|||| || |.|||||||||||
BPUM_2659___y 476 AGGAATTGGTGGATATGGTGATCCACCAAGAGT-ATCTCATGAGAAAGCA 524
BSNT_04388___ 525 TACGAAGGATGCAAAAACCGGACTCTTTTATCACGCCTGGGATGAAGCGA 574
|||.||.||||.|||||||||.||.|.|||||||||.|||||.||| |||
BPUM_2659___y 525 TACAAAAGATGAAAAAACCGGTCTGTATTATCACGCTTGGGACGAA-CGA 573
BSNT_04388___ 575 AAA-AAATGCCTTGGGCCAATGAAGAGACAGGCTGTTCTCCGGAATTCTG 623
||| ..|||||.|||||..||.||.|||||||||||||.||.||.||.||
BPUM_2659___y 574 AAAGTGATGCCATGGGCGGATCAAAAGACAGGCTGTTCGCCCGAGTTTTG 623
BSNT_04388___ 624 GGCGCGTTCCATCGGGTGGTACGTCATGTCTCTTGCTGACATGATTGAAG 673
|||..|.||..|.||.|||||.|||.|..|..|.||.||||||||.||.|
BPUM_2659___y 624 GGCAAGGTCATTTGGCTGGTATGTCCTTGCATTAGCAGACATGATCGAGG 673
BSNT_04388___ 674 AGCTGCCGAAGAAGCATCCA-----AACCGTCATGTGTGGAAAAACACGC 718
|.|||||..||.|||||..| || |..|||||||..|.||||
BPUM_2659___y 674 ATCTGCCAGAGCAGCATGAAGGGAGAA-----AAATGTGGAAGGAAACGC 718
BSNT_04388___ 719 TGCGGGACATGATTAAAAGCATCTGCCGC----TATCAAGACAAAGAGAC 764
||...||||||.|..|||| ||..|| ||.||.||..||||.||
BPUM_2659___y 719 TGATAGACATGCTGGAAAG----TGTAGCTAGGTACCAGGATCAAGACAC 764
BSNT_04388___ 765 GGGGTTATGGTATCAGATCGTTGATAAGGGAGAC----AGGTCCGATAAC 810
.||.||||||.||||.|||.|||||||.|| ||| || |||.||.
BPUM_2659___y 765 AGGTTTATGGCATCAAATCATTGATAAAGG-GACGCATAG---CGACAAT 810
BSNT_04388___ 811 TGGCTGGAAAGCTCAGGATCCTGCCTGTACATGTACGCACTTGCGAAGGG 860
|||||.||||||||.|||||.||..|.|.|||||||||..|.||.||.|.
BPUM_2659___y 811 TGGCTTGAAAGCTCTGGATCGTGTTTATTCATGTACGCCATGGCAAAAGC 860
BSNT_04388___ 861 AATCAATCAAGGCTAT-----------CTAGACAGAGCTTACGAAACAAC 899
.||.||..||||.||| |||.|||||.|.|
BPUM_2659___y 861 CATGAACGAAGGATATGTCAGCCTCCGCTACACAGATCAT---------- 900
BSNT_04388___ 900 ACTACTAAAAGCGTATCAAGGCTTGATTCAGCATAAAA---CCGAAACAT 946
.|..|.|||||.|||||||||||.|||.|||||||.| |.||.|
BPUM_2659___y 901 -GTGGTGAAAGCATATCAAGGCTTAATTAAGCATAAGACGGCTGAGA--- 946
BSNT_04388___ 947 CAGAAGACGGAGCGTTTCTCGTCAAAGACATATGTGTCGGAACGTCAGCC 996
|||||..|||.|..|||..|.||||.||.||||||.||||.||.||.||.
BPUM_2659___y 947 CAGAAACCGGTGATTTTGCCATCAATGATATATGTATCGGTACATCTGCT 996
BSNT_04388___ 997 GGTTTCTATGACTATTATGTCAGCCGCGAAAGAAGCACAAACGATCTGCA 1046
||.||.||.||.||.||.|||.|..|.||.|||||||||||.|||.||||
BPUM_2659___y 997 GGGTTTTACGATTACTACGTCGGTAGAGAGAGAAGCACAAATGATTTGCA 1046
BSNT_04388___ 1047 CGGAGCCGGCGCGTTTATTTTAGCTATGACAGAGCTGGA------GCCTC 1090
|||.||.|||||.||||||.|.||..|.||.|||||.|| |.||.
BPUM_2659___y 1047 CGGGGCAGGCGCTTTTATTATGGCATTAACTGAGCTAGAGAAGCTGTCTG 1096
BSNT_04388___ 1091 TTTTT----AGGTCAGCCGGGAAATGA 1113
||||| ||| .||||
BPUM_2659___y 1097 TTTTTCAAAAGG----------CATGA 1113
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