Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04387 and BPUM_2658
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04387.1.24716.seq
# -bsequence dna-align/BPUM_2658___yteS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04387-BPUM_2658___yteS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04387-BPUM_2658___yteS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04387
# 2: BPUM_2658___yteS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 566
# Identity: 284/566 (50.2%)
# Similarity: 284/566 (50.2%)
# Gaps: 184/566 (32.5%)
# Score: 789.5
#
#
#=======================================
BSNT_04387 0 -------------------------------------------------- 0
BPUM_2658___y 1 ATGAAGAGGAAAAAAAAGGCTGCGGCATGGCTCTTCAGCTTCATCGCCGC 50
BSNT_04387 1 -------------------------------------ATGCATGTCATTC 13
||..||||..|..
BPUM_2658___y 51 CTTTTGTTTGTCAGCCTGTCATGGGAAAACAAACGGTATCGATGTTCTGA 100
BSNT_04387 14 TCTTTTCTGATATG--CAGGCTGGCGTACAGGAAAAAATAAAAAAGGCCG 61
|.||||||||.||| ||.| ||..|..||||..||.|| |
BPUM_2658___y 101 TTTTTTCTGACATGTCCAAG--GGGATGAAGGATCAATTA---------G 139
BSNT_04387 62 CCGAGCAGAATGC--------CGG--GAAGA-----------TCGATATC 90
.|| ||||.|| ||| .|||| ||.|.|||
BPUM_2658___y 140 TCG---AGAAGGCTTTTCAAACGGAACAAGAAACGTATAGCGTCCACATC 186
BSNT_04387 91 TTTCCAGCTTTTCAGGAAAAACTGCTGACTGAAATTACCGCCCATGAGGG 140
|||||.||..|||..||||||||.||...|||||||||..|..|.|||||
BPUM_2658___y 187 TTTCCGGCGATTCCTGAAAAACTTCTTGTTGAAATTACTTCAAAAGAGGG 236
BSNT_04387 141 AGATGTTTTCATC------GTGCCTGAAGACATGTTTCAAGCTTACGATG 184
.|| |||| ||.||.|||||.|||||||.|.|.||.||||
BPUM_2658___y 237 GGA------CATCATGCTTGTCCCGGAAGAGATGTTTCGAACGTATGATG 280
BSNT_04387 185 ATCCGGAAAATTTTCA---GCCGTTAAACGGATTGCCTCCTAAAAAAACA 231
||||.||||..||||| || ||.||..|||.|.| |.|.|..|
BPUM_2658___y 281 ATCCTGAAAGCTTTCAATTGC--TTGAAGAGATGGGC-----ATAGATGA 323
BSNT_04387 232 TC----------TCCTTATACAACTGTTAATAAAAAAACAGGAGAAAAAA 271
|| .||.|||||.||.|...||.||||.||||| .||.|
BPUM_2658___y 324 TCAAGCGGCAGGGCCATATACGACCGAGGATCAAAAGACAGG---GAAGA 370
BSNT_04387 272 C----GATCTATGCCGTTCAGATCGAAAAAGG---GAAAAAACGGCTGAA 314
| ||| |||||.|||||..|..|.||||| |||||| |||.||
BPUM_2658___y 371 CGGTGGAT-TATGCGGTTCAAGTTAACAAAGGCACGAAAAA---GCTAAA 416
BSNT_04387 315 CGGCTATTCTTTTCGATTGAATCGCAATATGGCGGCGTTTATTCCTGTGT 364
|||||||.|.||||||||..|.||..||||||..||.||||||||.||||
BPUM_2658___y 417 CGGCTATACCTTTCGATTACACCGAGATATGGTCGCTTTTATTCCCGTGT 466
BSNT_04387 365 ATGCTGAAAAAACAGAGGAAGCGCTGCAGCTGATTTCTCAACTAAC---- 410
||||.||.|||.|..|.||.|||||| |.|||||...|||
BPUM_2658___y 467 ATGCAGACAAATCCAAAGAGGCGCTG-------TCTCTCATGAAACAGCT 509
BSNT_04387 411 ---TGAAGCCCGATAG 423
||||...||||||
BPUM_2658___y 510 TCGTGAAAATCGATAG 525
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