Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04383 and BPUM_2656
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04383.1.24716.seq
# -bsequence dna-align/BPUM_2656___yteU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04383-BPUM_2656___yteU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04383-BPUM_2656___yteU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04383
# 2: BPUM_2656___yteU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity: 350/748 (46.8%)
# Similarity: 350/748 (46.8%)
# Gaps: 302/748 (40.4%)
# Score: 874.5
#
#
#=======================================
BSNT_04383 0 -------------------------------------------------- 0
BPUM_2656___y 1 ATGGATCATGATGGTTCAATGAGCAGAATGCTGCGAATGTGTGAGTGGGT 50
BSNT_04383 0 -------------------------------------------------- 0
BPUM_2656___y 51 GATGAGACTCGCCTATACGAATTTGCTATGGCTGCTGTTCACCTTGATGG 100
BSNT_04383 1 --------------------------GTG------GCG-----CTCGGT- 12
|.| ||| .|||||
BPUM_2656___y 101 GGTTTGGGATCTTTGGATTGATGCCTGCGACCACTGCGTTATTTTCGGTG 150
BSNT_04383 13 -TGCCGAAA------AGAAGCCGAGGA-CAA-----CG--TTCCGGTGCT 47
|| .|||| |.|||...|.|| ||| || ||||||
BPUM_2656___y 151 ATG-AGAAAGTGGATACAAGGGCATGAGCAAGTGAGCGTTTTCCGG---- 195
BSNT_04383 48 CAAAACGTTTTGGCAGGAATATA-AGGGT-GAATTTTTTCGTTCAAATCT 95
||.||||||.||| |.|| .|.|| ||.|||.|.||.||.|||.|
BPUM_2656___y 196 ----ACTTTTTGGAAGG--TGTACCGTGTGGAGTTTGTACGCTCTAATTT 239
BSNT_04383 96 GCTCGGCGCTGTACTGGCGC------TCATCGGAGTGATCATTTATATTG 139
..|.|| |.|||||| ||||.||...|||.||.|||.|.|
BPUM_2656___y 240 AATAGG------AGTGGCGCTACTGATCATAGGGACGATTATATATGTAG 283
BSNT_04383 140 ATTTGGCCTTCATTTATCCAA-------GTCATTCCCTTCTGCACATCCT 182
|..|.||.||.|||||||||| || ||.||||..|.||
BPUM_2656___y 284 ACCTTGCGTTTATTTATCCAACGAGCTGGT-------TTTTGCATGTGCT 326
BSNT_04383 183 GCGCTTCGCCA-TTATGATATTTGG----CTTTTTGTTCGT-ATCCATGC 226
.||.||.|||| |||| ||.||||| ||.|||||| || | ||
BPUM_2656___y 327 TCGTTTTGCCATTTAT-ATCTTTGGTTTTCTCTTTGTT-GTGA-----GC 369
BSNT_04383 227 TT-TTTTATGTGTTTCCGCTGCTTGTCCATTTTGACTGGAAAAAACGTCT 275
|| ||||||.|.|||||||||||.|..||||.|||.||||||||||||||
BPUM_2656___y 370 TTGTTTTATATTTTTCCGCTGCTGGCTCATTATGATTGGAAAAAACGTCT 419
BSNT_04383 276 GTATGTGAAATTTTCGCTCTTGCTCAGTGTGGCGTATTTGCAATATAC-G 324
.|||.|||||||.||.||.||||||.||.|..|.|||||||||||||| .
BPUM_2656___y 420 CTATTTGAAATTCTCTCTTTTGCTCGGTATCTCCTATTTGCAATATACAC 469
BSNT_04383 325 TTTGCTATGCTTGCGCTGACTGTT----GCTCT----TTTTTTCTTGC-T 365
|||| ||||||.| |.|| ||||| |||.|||| | |
BPUM_2656___y 470 TTTG-TATGCTCG-------TTTTCTCGGCTCTACTATTTGTTCT--CTT 509
BSNT_04383 366 TGCGTACCTGCCGGACATTGTCCCTTTTTTCAGCGTCAGCCTTATCAGCT 415
|||.||..||||||..||.||.||.||.||.||.||.|| || |
BPUM_2656___y 510 TGCTTATTTGCCGGGAATCGTACCGTTCTTTAGTGTGAG---TA-----T 551
BSNT_04383 416 ACTGTCATATGCGCATTGTTTATGCCGTGCTGCTG--------------- 450
|||..|.||||..|| ||| ||| ||||
BPUM_2656___y 552 ACTCGCCTATGTCCA-----TAT---GTG--GCTGGCCTATCAAGTATTC 591
BSNT_04383 451 ---AAAGTGGAG---------CAGCAAGGCGGCGAGCC--ACAGAGGGAA 486
|||||.||| .||||| |||..|||| |..||.|.||
BPUM_2656___y 592 AAAAAAGTAGAGTTTGACAGTGAGCAA--CGGGCAGCCGAAGTGAAGAAA 639
BSNT_04383 487 ----TCCCAT----------ATACGGAAAGCTTTTTAA---------- 510
|.|||| || || ||||...|.||
BPUM_2656___y 640 CGCCTGCCATCTTTCCTACAAT-CG--AAGCGGGTGAATACACAGTGA 684
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