Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04383 and BPUM_2656

See Amino acid alignment / Visit BSNT_04383 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_04383.1.24716.seq
#    -bsequence dna-align/BPUM_2656___yteU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04383-BPUM_2656___yteU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04383-BPUM_2656___yteU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04383
# 2: BPUM_2656___yteU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity:     350/748 (46.8%)
# Similarity:   350/748 (46.8%)
# Gaps:         302/748 (40.4%)
# Score: 874.5
# 
#
#=======================================

BSNT_04383         0 --------------------------------------------------      0
                                                                       
BPUM_2656___y      1 ATGGATCATGATGGTTCAATGAGCAGAATGCTGCGAATGTGTGAGTGGGT     50

BSNT_04383         0 --------------------------------------------------      0
                                                                       
BPUM_2656___y     51 GATGAGACTCGCCTATACGAATTTGCTATGGCTGCTGTTCACCTTGATGG    100

BSNT_04383         1 --------------------------GTG------GCG-----CTCGGT-     12
                                               |.|      |||     .||||| 
BPUM_2656___y    101 GGTTTGGGATCTTTGGATTGATGCCTGCGACCACTGCGTTATTTTCGGTG    150

BSNT_04383        13 -TGCCGAAA------AGAAGCCGAGGA-CAA-----CG--TTCCGGTGCT     47
                      || .||||      |.|||...|.|| |||     ||  ||||||    
BPUM_2656___y    151 ATG-AGAAAGTGGATACAAGGGCATGAGCAAGTGAGCGTTTTCCGG----    195

BSNT_04383        48 CAAAACGTTTTGGCAGGAATATA-AGGGT-GAATTTTTTCGTTCAAATCT     95
                         ||.||||||.|||  |.|| .|.|| ||.|||.|.||.||.|||.|
BPUM_2656___y    196 ----ACTTTTTGGAAGG--TGTACCGTGTGGAGTTTGTACGCTCTAATTT    239

BSNT_04383        96 GCTCGGCGCTGTACTGGCGC------TCATCGGAGTGATCATTTATATTG    139
                     ..|.||      |.||||||      ||||.||...|||.||.|||.|.|
BPUM_2656___y    240 AATAGG------AGTGGCGCTACTGATCATAGGGACGATTATATATGTAG    283

BSNT_04383       140 ATTTGGCCTTCATTTATCCAA-------GTCATTCCCTTCTGCACATCCT    182
                     |..|.||.||.||||||||||       ||       ||.||||..|.||
BPUM_2656___y    284 ACCTTGCGTTTATTTATCCAACGAGCTGGT-------TTTTGCATGTGCT    326

BSNT_04383       183 GCGCTTCGCCA-TTATGATATTTGG----CTTTTTGTTCGT-ATCCATGC    226
                     .||.||.|||| |||| ||.|||||    ||.|||||| || |     ||
BPUM_2656___y    327 TCGTTTTGCCATTTAT-ATCTTTGGTTTTCTCTTTGTT-GTGA-----GC    369

BSNT_04383       227 TT-TTTTATGTGTTTCCGCTGCTTGTCCATTTTGACTGGAAAAAACGTCT    275
                     || ||||||.|.|||||||||||.|..||||.|||.||||||||||||||
BPUM_2656___y    370 TTGTTTTATATTTTTCCGCTGCTGGCTCATTATGATTGGAAAAAACGTCT    419

BSNT_04383       276 GTATGTGAAATTTTCGCTCTTGCTCAGTGTGGCGTATTTGCAATATAC-G    324
                     .|||.|||||||.||.||.||||||.||.|..|.|||||||||||||| .
BPUM_2656___y    420 CTATTTGAAATTCTCTCTTTTGCTCGGTATCTCCTATTTGCAATATACAC    469

BSNT_04383       325 TTTGCTATGCTTGCGCTGACTGTT----GCTCT----TTTTTTCTTGC-T    365
                     |||| ||||||.|       |.||    |||||    |||.||||  | |
BPUM_2656___y    470 TTTG-TATGCTCG-------TTTTCTCGGCTCTACTATTTGTTCT--CTT    509

BSNT_04383       366 TGCGTACCTGCCGGACATTGTCCCTTTTTTCAGCGTCAGCCTTATCAGCT    415
                     |||.||..||||||..||.||.||.||.||.||.||.||   ||     |
BPUM_2656___y    510 TGCTTATTTGCCGGGAATCGTACCGTTCTTTAGTGTGAG---TA-----T    551

BSNT_04383       416 ACTGTCATATGCGCATTGTTTATGCCGTGCTGCTG---------------    450
                     |||..|.||||..||     |||   |||  ||||               
BPUM_2656___y    552 ACTCGCCTATGTCCA-----TAT---GTG--GCTGGCCTATCAAGTATTC    591

BSNT_04383       451 ---AAAGTGGAG---------CAGCAAGGCGGCGAGCC--ACAGAGGGAA    486
                        |||||.|||         .|||||  |||..||||  |..||.|.||
BPUM_2656___y    592 AAAAAAGTAGAGTTTGACAGTGAGCAA--CGGGCAGCCGAAGTGAAGAAA    639

BSNT_04383       487 ----TCCCAT----------ATACGGAAAGCTTTTTAA----------    510
                         |.||||          || ||  ||||...|.||          
BPUM_2656___y    640 CGCCTGCCATCTTTCCTACAAT-CG--AAGCGGGTGAATACACAGTGA    684


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.