Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04378 and BPUM_2650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04378.1.24716.seq
# -bsequence dna-align/BPUM_2650___ytfP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04378-BPUM_2650___ytfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04378-BPUM_2650___ytfP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04378
# 2: BPUM_2650___ytfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1327
# Identity: 926/1327 (69.8%)
# Similarity: 926/1327 (69.8%)
# Gaps: 95/1327 ( 7.2%)
# Score: 3198.5
#
#
#=======================================
BSNT_04378 1 ATGAAAAGAAAGTTGATGATAAAGATGAAACAATATGACGTAATTGTAAT 50
||||||||.|||||.||.|||||.||
BPUM_2650___y 1 ------------------------ATGAAACATTATGATGTCATTGTCAT 26
BSNT_04378 51 CGGCGGAGGCCCTTCAGGCTTGATGGCTGCGATTGCAGCAGGAGAACAGG 100
.|||||.||.|||||.||..|||||||.|||||||||.|||.|||.||.|
BPUM_2650___y 27 TGGCGGTGGACCTTCTGGACTGATGGCCGCGATTGCATCAGCAGAGCACG 76
BSNT_04378 101 GCGCTGGCGTGTTGCTGATAGATAAAGGAAATAAATTAGGACGGAAA-CT 149
|.||....||..||.|.||.||.|||||||..|||.|.|| |.|||| ||
BPUM_2650___y 77 GTGCAACTGTTCTGTTAATTGACAAAGGAACCAAACTTGG-CAGAAAGCT 125
BSNT_04378 150 CGCGATTTCCGGGGGCGGCCGCTGTAATGTGACGAACCGCCTTCCTGTGG 199
|||.|||||.||.||.||.||||||||.||.||.|||||||||||.||.|
BPUM_2650___y 126 CGCCATTTCTGGCGGTGGACGCTGTAACGTCACCAACCGCCTTCCAGTAG 175
BSNT_04378 200 AAGAAATTATCAAGCACATCCCCGGCAACGGGCGTTTTTTATACAGCGCG 249
|||||||.||||||||.||.|||||.|||||.||.||||||||.||.||.
BPUM_2650___y 176 AAGAAATCATCAAGCATATTCCCGGAAACGGCCGCTTTTTATATAGTGCA 225
BSNT_04378 250 TTTTCTGAATTTAATAATGAAGACATTATCAAGTTTTTTGAAAACCTCGG 299
||||||||.||.|||||.||.||.|||||....||||||||||||||.||
BPUM_2650___y 226 TTTTCTGAGTTCAATAACGAGGATATTATTTCTTTTTTTGAAAACCTTGG 275
BSNT_04378 300 CATTCAATTGAAGGAAGAGGATCACGGCCGGATGTTTCCTGTGACCGACA 349
||||.||.||||.|||||.|||||.||.||.|||||.|||||..|..|||
BPUM_2650___y 276 CATTGAACTGAAAGAAGAAGATCATGGACGTATGTTCCCTGTCTCAAACA 325
BSNT_04378 350 AAGCCCAAAGTGTCGTTGACGCGCTGTTAAACAGGCT--GAAGCAGCTCC 397
||||.|||..|||.||.||.||.||.|||.||||||| |.| |.|||.
BPUM_2650___y 326 AAGCACAATCTGTTGTGGATGCCCTTTTAGACAGGCTTCGCA--ACCTCA 373
BSNT_04378 398 GCGTAACAATCAGAACGAACGAGAAAATTAAATCTGTTATATATGAAGAT 447
..||.||.||..|||||||.|||||.||||||.|.|||.|.|||.||||.
BPUM_2650___y 374 ATGTGACCATTCGAACGAATGAGAAGATTAAAACAGTTCTGTATCAAGAC 423
BSNT_04378 448 GGACAGGCAGCAGGGATTGTGACGAATAATGGCGAAATGA-TCCATAGCC 496
|||||.|||||.||.|||||.||.|||||||..||||..| |.|| ||..
BPUM_2650___y 424 GGACAAGCAGCTGGAATTGTTACAAATAATGATGAAAAAATTTCA-AGTA 472
BSNT_04378 497 AGGCAGTCATTATCGCTGTCGGCGGTAAAAGCGTGCCTCATACCGGAAGC 546
|.||.||..|.||.|||||.|||||.|||||.|||||.|||||.||....
BPUM_2650___y 473 ATGCCGTTGTGATTGCTGTTGGCGGAAAAAGTGTGCCGCATACTGGCTCT 522
BSNT_04378 547 ACGGGAGACGGCTATGAATGGGCTGAAGCCGCGGGACATACCATAACAGA 596
||.||.||||||||.|.||||||.||||||||.||.|||||.||.|||||
BPUM_2650___y 523 ACTGGTGACGGCTACGCATGGGCAGAAGCCGCTGGTCATACGATTACAGA 572
BSNT_04378 597 GCTGTTTCCGACAGAGGTTCCCGTCACTTCTAG-CGAACCGTTCATTAAG 645
|||.||.||.|||||.||.||.|||||.|| || .||.|..||.|||||.
BPUM_2650___y 573 GCTCTTCCCAACAGAAGTACCAGTCACATC-AGATGAGCGTTTTATTAAA 621
BSNT_04378 646 CAAAAAACACTTC-AGGGCTTATCACTAAGAGATGTAGCCGTCAGTGTGT 694
.|||||...||.| ||||||| ||..|||||..|||.||.||||||||.|
BPUM_2650___y 622 GAAAAAGTGCTCCAAGGGCTT-TCTTTAAGAAGTGTGGCTGTCAGTGTTT 670
BSNT_04378 695 TAAATAAAAAAGGCAAACCGATTATCACACATAAAATGGACATGCTGTTT 744
|||||||||||||.|||||..|..||||||||...|||||.|||.|.|||
BPUM_2650___y 671 TAAATAAAAAAGGGAAACCCGTCGTCACACATGTCATGGATATGATCTTT 720
BSNT_04378 745 ACCCATTTCGGCCTCTCAGGACCTGCCATTCTCAGATGCAGCCAATTTGT 794
||.||.||.||..|.||.||.||.||..||||.|||||||||..||||||
BPUM_2650___y 721 ACACACTTTGGTTTATCCGGCCCAGCTGTTCTTAGATGCAGCGGATTTGT 770
BSNT_04378 795 CGTAAAAGAGCTGAAAAAACAGCCTCAAGTACCGATCAG------AATCG 838
.||.|||||..|.||.|||||||| .|||| ||.| |||.|
BPUM_2650___y 771 GGTGAAAGAATTAAAGAAACAGCC-----GACCG-TCCGTCTGCAAATAG 814
BSNT_04378 839 ACTTGTATCCGGATATCAATGAAGAAACGCTTTTCCAAAAGATGTATAAA 888
||||.|||||..|..|.|||||.||...||||||||||||..|..||.||
BPUM_2650___y 815 ACTTATATCCAAAGCTTAATGACGAGGAGCTTTTCCAAAAACTACATCAA 864
BSNT_04378 889 GAACTGAAGGAAGCACCGAAAAAAACCATTAAAAACGTGCTGAAGCCTTG 938
||..|.||.||||.||||||||||.||||||||||.||.||||||.||||
BPUM_2650___y 865 GACTTAAAAGAAGAACCGAAAAAAGCCATTAAAAATGTTCTGAAGTCTTG 914
BSNT_04378 939 GATGCAGGAGCGCTATCTCCTATTCCTGCTCGAAAAAAACGGCAT----- 983
||||||.||.|||||..|..|.||..||.|.||...||||||.||
BPUM_2650___y 915 GATGCAAGAACGCTACTTATTGTTTTTGTTAGAGCGAAACGGGATAGATC 964
BSNT_04378 984 CTCTCCGAACGTATCGTTTTCTGAGCTGCCGAAGGATCCTTTCAGAC--- 1030
||| ||..|| |.|||||.|..||..|.|||||| |.||
BPUM_2650___y 965 CTC----AAGATA-CATTTTCGGGTCTTGCTAAGGAT------AAACTGC 1003
BSNT_04378 1031 ---AATTTGTAAGGGACTGCAAGCAGTTTACTGTCCTCGCAAATGGCACA 1077
.|||.||....||.|||||.||.||||..||.|..||.||.||.||.
BPUM_2650___y 1004 GCGCATTCGTCCATGATTGCAAACATTTTATCGTTCATGCGAACGGTACG 1053
BSNT_04378 1078 CTGTCGCTTGATAAGGCATTTGTCACGGGAGGCGGGGTATCTGTAAAAGA 1127
||.||..|.||.||.||.||||||||.||.|||||.||.|||||.|||||
BPUM_2650___y 1054 CTCTCTTTAGACAAAGCGTTTGTCACAGGGGGCGGCGTTTCTGTGAAAGA 1103
BSNT_04378 1128 AATTGACCCGAAAAAAATGGCTTCTAAAAAAATGGAGGGGCTTTATTTTT 1177
||||||.||||||||||||||.||||||||||||...||.||.|||||.|
BPUM_2650___y 1104 AATTGAACCGAAAAAAATGGCGTCTAAAAAAATGCCCGGTCTATATTTCT 1153
BSNT_04378 1178 GCGGTGAAATCCTGGATATCCACGGCTACACAGGCGGATACAATATTACC 1227
||||.||||||.|.||.||.||.||.||.|||||||||||||||||.||.
BPUM_2650___y 1154 GCGGAGAAATCTTAGACATTCATGGTTATACAGGCGGATACAATATCACG 1203
BSNT_04378 1228 TCCGCCCTTGTCACAGGCAGGCTTGCAGGGCTAAATGCCGGACAATACGC 1277
||.||.|||||.||.|||.|.|||||.||..|.|||||.|.||...|.||
BPUM_2650___y 1204 TCAGCACTTGTGACTGGCCGACTTGCCGGTATGAATGCTGCACTTGAAGC 1253
BSNT_04378 1278 CCGTTCTTAA----------------- 1287
||
BPUM_2650___y 1254 --------AAAGGAGAGATTTTCATGA 1272
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