Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04378 and BPUM_2650

See Amino acid alignment / Visit BSNT_04378 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:55
# Commandline: needle
#    -asequence dna-align/BSNT_04378.1.24716.seq
#    -bsequence dna-align/BPUM_2650___ytfP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04378-BPUM_2650___ytfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04378-BPUM_2650___ytfP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04378
# 2: BPUM_2650___ytfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1327
# Identity:     926/1327 (69.8%)
# Similarity:   926/1327 (69.8%)
# Gaps:          95/1327 ( 7.2%)
# Score: 3198.5
# 
#
#=======================================

BSNT_04378         1 ATGAAAAGAAAGTTGATGATAAAGATGAAACAATATGACGTAATTGTAAT     50
                                             ||||||||.|||||.||.|||||.||
BPUM_2650___y      1 ------------------------ATGAAACATTATGATGTCATTGTCAT     26

BSNT_04378        51 CGGCGGAGGCCCTTCAGGCTTGATGGCTGCGATTGCAGCAGGAGAACAGG    100
                     .|||||.||.|||||.||..|||||||.|||||||||.|||.|||.||.|
BPUM_2650___y     27 TGGCGGTGGACCTTCTGGACTGATGGCCGCGATTGCATCAGCAGAGCACG     76

BSNT_04378       101 GCGCTGGCGTGTTGCTGATAGATAAAGGAAATAAATTAGGACGGAAA-CT    149
                     |.||....||..||.|.||.||.|||||||..|||.|.|| |.|||| ||
BPUM_2650___y     77 GTGCAACTGTTCTGTTAATTGACAAAGGAACCAAACTTGG-CAGAAAGCT    125

BSNT_04378       150 CGCGATTTCCGGGGGCGGCCGCTGTAATGTGACGAACCGCCTTCCTGTGG    199
                     |||.|||||.||.||.||.||||||||.||.||.|||||||||||.||.|
BPUM_2650___y    126 CGCCATTTCTGGCGGTGGACGCTGTAACGTCACCAACCGCCTTCCAGTAG    175

BSNT_04378       200 AAGAAATTATCAAGCACATCCCCGGCAACGGGCGTTTTTTATACAGCGCG    249
                     |||||||.||||||||.||.|||||.|||||.||.||||||||.||.||.
BPUM_2650___y    176 AAGAAATCATCAAGCATATTCCCGGAAACGGCCGCTTTTTATATAGTGCA    225

BSNT_04378       250 TTTTCTGAATTTAATAATGAAGACATTATCAAGTTTTTTGAAAACCTCGG    299
                     ||||||||.||.|||||.||.||.|||||....||||||||||||||.||
BPUM_2650___y    226 TTTTCTGAGTTCAATAACGAGGATATTATTTCTTTTTTTGAAAACCTTGG    275

BSNT_04378       300 CATTCAATTGAAGGAAGAGGATCACGGCCGGATGTTTCCTGTGACCGACA    349
                     ||||.||.||||.|||||.|||||.||.||.|||||.|||||..|..|||
BPUM_2650___y    276 CATTGAACTGAAAGAAGAAGATCATGGACGTATGTTCCCTGTCTCAAACA    325

BSNT_04378       350 AAGCCCAAAGTGTCGTTGACGCGCTGTTAAACAGGCT--GAAGCAGCTCC    397
                     ||||.|||..|||.||.||.||.||.|||.|||||||  |.|  |.|||.
BPUM_2650___y    326 AAGCACAATCTGTTGTGGATGCCCTTTTAGACAGGCTTCGCA--ACCTCA    373

BSNT_04378       398 GCGTAACAATCAGAACGAACGAGAAAATTAAATCTGTTATATATGAAGAT    447
                     ..||.||.||..|||||||.|||||.||||||.|.|||.|.|||.||||.
BPUM_2650___y    374 ATGTGACCATTCGAACGAATGAGAAGATTAAAACAGTTCTGTATCAAGAC    423

BSNT_04378       448 GGACAGGCAGCAGGGATTGTGACGAATAATGGCGAAATGA-TCCATAGCC    496
                     |||||.|||||.||.|||||.||.|||||||..||||..| |.|| ||..
BPUM_2650___y    424 GGACAAGCAGCTGGAATTGTTACAAATAATGATGAAAAAATTTCA-AGTA    472

BSNT_04378       497 AGGCAGTCATTATCGCTGTCGGCGGTAAAAGCGTGCCTCATACCGGAAGC    546
                     |.||.||..|.||.|||||.|||||.|||||.|||||.|||||.||....
BPUM_2650___y    473 ATGCCGTTGTGATTGCTGTTGGCGGAAAAAGTGTGCCGCATACTGGCTCT    522

BSNT_04378       547 ACGGGAGACGGCTATGAATGGGCTGAAGCCGCGGGACATACCATAACAGA    596
                     ||.||.||||||||.|.||||||.||||||||.||.|||||.||.|||||
BPUM_2650___y    523 ACTGGTGACGGCTACGCATGGGCAGAAGCCGCTGGTCATACGATTACAGA    572

BSNT_04378       597 GCTGTTTCCGACAGAGGTTCCCGTCACTTCTAG-CGAACCGTTCATTAAG    645
                     |||.||.||.|||||.||.||.|||||.|| || .||.|..||.|||||.
BPUM_2650___y    573 GCTCTTCCCAACAGAAGTACCAGTCACATC-AGATGAGCGTTTTATTAAA    621

BSNT_04378       646 CAAAAAACACTTC-AGGGCTTATCACTAAGAGATGTAGCCGTCAGTGTGT    694
                     .|||||...||.| ||||||| ||..|||||..|||.||.||||||||.|
BPUM_2650___y    622 GAAAAAGTGCTCCAAGGGCTT-TCTTTAAGAAGTGTGGCTGTCAGTGTTT    670

BSNT_04378       695 TAAATAAAAAAGGCAAACCGATTATCACACATAAAATGGACATGCTGTTT    744
                     |||||||||||||.|||||..|..||||||||...|||||.|||.|.|||
BPUM_2650___y    671 TAAATAAAAAAGGGAAACCCGTCGTCACACATGTCATGGATATGATCTTT    720

BSNT_04378       745 ACCCATTTCGGCCTCTCAGGACCTGCCATTCTCAGATGCAGCCAATTTGT    794
                     ||.||.||.||..|.||.||.||.||..||||.|||||||||..||||||
BPUM_2650___y    721 ACACACTTTGGTTTATCCGGCCCAGCTGTTCTTAGATGCAGCGGATTTGT    770

BSNT_04378       795 CGTAAAAGAGCTGAAAAAACAGCCTCAAGTACCGATCAG------AATCG    838
                     .||.|||||..|.||.||||||||     .|||| ||.|      |||.|
BPUM_2650___y    771 GGTGAAAGAATTAAAGAAACAGCC-----GACCG-TCCGTCTGCAAATAG    814

BSNT_04378       839 ACTTGTATCCGGATATCAATGAAGAAACGCTTTTCCAAAAGATGTATAAA    888
                     ||||.|||||..|..|.|||||.||...||||||||||||..|..||.||
BPUM_2650___y    815 ACTTATATCCAAAGCTTAATGACGAGGAGCTTTTCCAAAAACTACATCAA    864

BSNT_04378       889 GAACTGAAGGAAGCACCGAAAAAAACCATTAAAAACGTGCTGAAGCCTTG    938
                     ||..|.||.||||.||||||||||.||||||||||.||.||||||.||||
BPUM_2650___y    865 GACTTAAAAGAAGAACCGAAAAAAGCCATTAAAAATGTTCTGAAGTCTTG    914

BSNT_04378       939 GATGCAGGAGCGCTATCTCCTATTCCTGCTCGAAAAAAACGGCAT-----    983
                     ||||||.||.|||||..|..|.||..||.|.||...||||||.||     
BPUM_2650___y    915 GATGCAAGAACGCTACTTATTGTTTTTGTTAGAGCGAAACGGGATAGATC    964

BSNT_04378       984 CTCTCCGAACGTATCGTTTTCTGAGCTGCCGAAGGATCCTTTCAGAC---   1030
                     |||    ||..|| |.|||||.|..||..|.||||||      |.||   
BPUM_2650___y    965 CTC----AAGATA-CATTTTCGGGTCTTGCTAAGGAT------AAACTGC   1003

BSNT_04378      1031 ---AATTTGTAAGGGACTGCAAGCAGTTTACTGTCCTCGCAAATGGCACA   1077
                        .|||.||....||.|||||.||.||||..||.|..||.||.||.||.
BPUM_2650___y   1004 GCGCATTCGTCCATGATTGCAAACATTTTATCGTTCATGCGAACGGTACG   1053

BSNT_04378      1078 CTGTCGCTTGATAAGGCATTTGTCACGGGAGGCGGGGTATCTGTAAAAGA   1127
                     ||.||..|.||.||.||.||||||||.||.|||||.||.|||||.|||||
BPUM_2650___y   1054 CTCTCTTTAGACAAAGCGTTTGTCACAGGGGGCGGCGTTTCTGTGAAAGA   1103

BSNT_04378      1128 AATTGACCCGAAAAAAATGGCTTCTAAAAAAATGGAGGGGCTTTATTTTT   1177
                     ||||||.||||||||||||||.||||||||||||...||.||.|||||.|
BPUM_2650___y   1104 AATTGAACCGAAAAAAATGGCGTCTAAAAAAATGCCCGGTCTATATTTCT   1153

BSNT_04378      1178 GCGGTGAAATCCTGGATATCCACGGCTACACAGGCGGATACAATATTACC   1227
                     ||||.||||||.|.||.||.||.||.||.|||||||||||||||||.||.
BPUM_2650___y   1154 GCGGAGAAATCTTAGACATTCATGGTTATACAGGCGGATACAATATCACG   1203

BSNT_04378      1228 TCCGCCCTTGTCACAGGCAGGCTTGCAGGGCTAAATGCCGGACAATACGC   1277
                     ||.||.|||||.||.|||.|.|||||.||..|.|||||.|.||...|.||
BPUM_2650___y   1204 TCAGCACTTGTGACTGGCCGACTTGCCGGTATGAATGCTGCACTTGAAGC   1253

BSNT_04378      1278 CCGTTCTTAA-----------------   1287
                             ||                 
BPUM_2650___y   1254 --------AAAGGAGAGATTTTCATGA   1272


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