Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04375 and BPUM_2648
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04375.1.24716.seq
# -bsequence dna-align/BPUM_2648___rsuA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04375-BPUM_2648___rsuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04375-BPUM_2648___rsuA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04375
# 2: BPUM_2648___rsuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity: 506/774 (65.4%)
# Similarity: 506/774 (65.4%)
# Gaps: 111/774 (14.3%)
# Score: 1552.0
#
#
#=======================================
BSNT_04375 1 ATGAGACTTGATAAGCTGCTTGCCAACAGCGGGTATGGTTCCAGAAAAGA 50
|||||.||||||||..|||||||.|.||||||.|.||||||.||||||||
BPUM_2648___r 1 ATGAGGCTTGATAAATTGCTTGCTAGCAGCGGCTTTGGTTCAAGAAAAGA 50
BSNT_04375 51 AGTCA--AAGCCGTTGTAAAGGCTGGAG------CCGTGATGATCGACGG 92
.||.| |||| |.||.|||||..|.| |||||| || |
BPUM_2648___r 51 TGTAAAGAAGC--TGGTCAAGGCACGGGCAGTCACCGTGA--AT-----G 91
BSNT_04375 93 CAAACCTGCCAAAG-ATGTAAAGGCGCACGTTGATCC------TGATACG 135
.|.|.|||.|.||| |.||.||.|..||.|||||||| ||||
BPUM_2648___r 92 GAGAACTGGCGAAGCAGGTGAAAGATCATGTTGATCCATCGAATGAT--- 138
BSNT_04375 136 CAGGAGGTGACCGTATACGGGGAACCGGTTGATTATCGAGAGTTCATTTA 185
||.|||..|||..||||.||.|..||.||.|||..|||.||||||||
BPUM_2648___r 139 ---GAAGTGCTCGTGCACGGAGAGCGTGTAGAGTATAAAGAATTCATTTA 185
BSNT_04375 186 TCTT-ATGATGAATAAACCGCAGGGCGTGCTGTCGGCGACTGAGGACAGC 234
||| ||||||||.|||||..|.||.||..|.||.||.||.||.||....
BPUM_2648___r 186 -CTTAATGATGAACAAACCAGATGGGGTCATCTCAGCAACAGAAGATGTG 234
BSNT_04375 235 CGGCAGCAAACAGTGGTCGATCTGC-TGACGCCGGAGGAGATGAGATTTG 283
|||.|..||||.||.||||||.|.| ||| .||||||||.||...|...|
BPUM_2648___r 235 CGGGATGAAACGGTCGTCGATTTACTTGA-ACCGGAGGATATCGCAAGGG 283
BSNT_04375 284 AGCCATTTCCAGCCGGCAGGCTTGATAAAGATACAGAGGGCTTTTTGCTG 333
||||||||||.|..|||||.||.|||||.|||||||..||..||.|.||.
BPUM_2648___r 284 AGCCATTTCCTGTAGGCAGACTGGATAAGGATACAGTCGGTCTTCTCCTC 333
BSNT_04375 334 CTCACAAATGATGGCCAGCTCGCACATCGGCTCCTTTCTCCTAAAAAGCA 383
||||||||||||||.|||||.|||||||...|.||||||||.||||||||
BPUM_2648___r 334 CTCACAAATGATGGACAGCTTGCACATCAATTACTTTCTCCAAAAAAGCA 383
BSNT_04375 384 TGTTCCAAAAACGTATGAAGTCCATTTAAAATCAC-------AGATTTCT 426
|||.|||||||||||.|||||.|||||.||||..| ||||
BPUM_2648___r 384 TGTGCCAAAAACGTACGAAGTTCATTTGAAATATCCATTAGGAGAT---- 429
BSNT_04375 427 AGGGAAGACATC--TCCGATTTGGAAACGGGTGTCTA-CA---TAGAGGG 470
.|||||||| ||...|| |||..|||||| || || ||||.|
BPUM_2648___r 430 ---CAAGACATCAATCGCCTT--GAAGAGGGTGT-TATCATTTTAGATG- 472
BSNT_04375 471 CGGCTATAA---AACAAAGCCGGC-AAGAGCGGAAATCAAAACAAACGAC 516
||.| .||.|||||||| ||| |..|||.|..|..|.||.||.
BPUM_2648___r 473 -----ATTACCGTACGAAGCCGGCGAAG-GTTGAAGTAGATGCGAATGAA 516
BSNT_04375 517 AGTGGCAATACCGTGATATAC--------CTGACAATTACAGAAGGAAAA 558
|||| || ||||.|| .|.||||||||.||||||||.
BPUM_2648___r 517 AGTG--AA------GATACACGCATCCGTTTAACAATTACTGAAGGAAAG 558
BSNT_04375 559 TACCATCAGGTCAAGCAAATGGCAAAGGCAGTCGGCAATGAAGTGGTTTA 608
||||||||.||.||||..|||||..|.|||||.||.||||||||..|.|.
BPUM_2648___r 559 TACCATCAAGTGAAGCTCATGGCGCAAGCAGTGGGAAATGAAGTCATCTT 608
BSNT_04375 609 TTTGAAGCGGCTTTCGATGGGACGCGTTTCCC----TAGATCCCGCTCTG 654
|||.||..|.|.||||||||| ||.||.| |||||...|.|||.
BPUM_2648___r 609 TTTAAAAAGACGTTCGATGGG----GTCTCTCTCTTTAGATGAAGATCTA 654
BSNT_04375 655 GCACCCGGAGAATACCGTGAGCTGACAGAGGAAG--------AGCTTCAT 696
||||||||.||.||||||||..||||.||.|||| |||||.|
BPUM_2648___r 655 GCACCCGGGGAGTACCGTGAATTGACGGATGAAGAATTAGACAGCTTAA- 703
BSNT_04375 697 TTGCTCAATGAGCCGCAAGCATGA 720
||||| |.|.|||.|
BPUM_2648___r 704 ----TCAAT------CGACCATAA 717
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