Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04370 and BPUM_2646
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04370___ytiP.1.24716.seq
# -bsequence dna-align/BPUM_2646___ytiP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04370___ytiP-BPUM_2646___ytiP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04370___ytiP-BPUM_2646___ytiP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04370___ytiP
# 2: BPUM_2646___ytiP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1328
# Identity: 942/1328 (70.9%)
# Similarity: 942/1328 (70.9%)
# Gaps: 58/1328 ( 4.4%)
# Score: 3172.5
#
#
#=======================================
BSNT_04370___ 1 ATGTTTCATCTAAAAGAGCAGCAAACATCCATAAAGCAAGAAATCATAGC 50
||||||||..|||||||..|.|||||...|||||||..||||.|.||.||
BPUM_2646___y 1 ATGTTTCAGTTAAAAGAAAACCAAACCAACATAAAGAGAGAATTAATCGC 50
BSNT_04370___ 51 AGGGCTGACGACCTTTTTCACAATGGTCTATATCGTCGTGGTCAATCCGG 100
.||..|||||||.||.||.||.|||||||||||.||.|..||.||.||.|
BPUM_2646___y 51 TGGTATGACGACATTCTTTACTATGGTCTATATTGTTGCCGTTAACCCAG 100
BSNT_04370___ 101 TCATTCTGGCTAACGCCGGGGTTCCTTTCGACCAGGTGTTCACCGCAACG 150
..|||||..|.||.||.||..|||||||.|||||.||.||.||.|||||.
BPUM_2646___y 101 GAATTCTTTCAAAAGCAGGCATTCCTTTTGACCAAGTTTTTACTGCAACA 150
BSNT_04370___ 151 ATTATTGCCTCCATTGTCGGAACGCTGTGGATGGCCCTGGCAGCAAATTA 200
|||||.||..|..|.|||||.|||||.||||||||.||....||||||||
BPUM_2646___y 151 ATTATCGCTGCTGTCGTCGGTACGCTCTGGATGGCACTATTTGCAAATTA 200
BSNT_04370___ 201 TCCGATTGCTATTGCGCCCGGCATGGGCTTGAACGCTTATTTAGCCTTT- 249
|||.|||||.|||||.||.||.|||||..||||.|..|||||..|||||
BPUM_2646___y 201 TCCAATTGCGATTGCACCAGGTATGGGGCTGAATGTCTATTTCACCTTTA 250
BSNT_04370___ 250 CA--TGTCGTAAGCGCAAGCGATGGCGGCATCACGTACGCAACAGCTTTC 297
|| ||||| |.|.|||||||||||..||...||||||.|||
BPUM_2646___y 251 CAGTTGTCG---------GTGGTGGCGGCATCAGCTATCAAACAGCGTTC 291
BSNT_04370___ 298 AGCGCAGTATTTACAGCAGGGGTTCTCTTCATTATTCTATCGTTAAC--G 345
||.||.||||||...||.||..|.|||||..|||||.|||||||||| .
BPUM_2646___y 292 AGTGCGGTATTTGTTGCTGGTATACTCTTTGTTATTTTATCGTTAACATC 341
BSNT_04370___ 346 CCTTTAAGAAAACAACTTATAGAAGCGATTCCAAACAATTTAAAATACGG 395
|||| |||||||||||.||..||||.||||||.|.||||||||||||||
BPUM_2646___y 342 CCTT--AGAAAACAACTGATTCAAGCCATTCCAGATAATTTAAAATACGG 389
BSNT_04370___ 396 GATCACAACTGGGATCGGGCTGTTTATTGCTTTTATCGGTTTGCGTCAAG 445
.||.|||.|.||.||||||||.||||||||.||||||||..|.|||||..
BPUM_2646___y 390 CATTACAGCCGGAATCGGGCTTTTTATTGCATTTATCGGGCTCCGTCAGT 439
BSNT_04370___ 446 CGGGCATTGTGGCAGCTGATGAGTCAAACCTGGTCACTCTCGGCAATCTG 495
|.||.|||.|..||||||||..|..|||.||.||.|..||.|||||..||
BPUM_2646___y 440 CTGGGATTATCACAGCTGATCCGGAAAATCTAGTGAAGCTTGGCAACTTG 489
BSNT_04370___ 496 CATTCACCTGGTGTTATCTTAACGCTGGTTGGCCTTTTGATCAGCGTGGT 545
...||.||||.|||.||.||||||||.||.|||.|..|||||...||..|
BPUM_2646___y 490 AGCTCGCCTGTTGTCATTTTAACGCTTGTCGGCTTAATGATCTCTGTTAT 539
BSNT_04370___ 546 CCTGATGGTGCTGAATGTAAGCGGCGCTTTATTTATCGGAATGGCAGCTA 595
..|.|||||.||..|..|.|..||.|||.|.||||||||.|||..|||.|
BPUM_2646___y 540 TTTAATGGTACTTCAAATCAATGGTGCTCTGTTTATCGGCATGTTAGCCA 589
BSNT_04370___ 596 C--CGCTTTGATCGCCTTTTTCACCGGTCAGCTCCATTTTCC-AAAGGGA 642
| ||| |.||.|||.|..|.||.||.|||||.|||||.|| ||| |
BPUM_2646___y 590 CGACGC--TAATTGCCCTCGTAACAGGACAGCTTCATTTCCCTAAA---A 634
BSNT_04370___ 643 T--TTATGTCGCTTCCTCATTTGCCGGAAGGATTGATGATCTCAAATCCA 690
| |.|||....|||||....||||.|||||..||.||||..||||||||
BPUM_2646___y 635 TGCTGATGGACATTCCTGCCCTGCCAGAAGGTATGCTGATTACAAATCCA 684
BSNT_04370___ 691 TTTACCGCTTTTGGCGATGTCAT----TCATCACGGCCTGTACGCTGTCG 736
||..|.||.|||||.||||| || |||||| ..||||.||.||||
BPUM_2646___y 685 TTCGCTGCCTTTGGTGATGT-ATTCTCTCATCA---TTTGTATGCGGTCG 730
BSNT_04370___ 737 TCTTTTCTTTTCTATTAGTCACCATTTTTGATACGACAGGCACGATGATC 786
||||.||.||..||.||||.||.|||||||||||.||.|||||.||||||
BPUM_2646___y 731 TCTTCTCCTTCTTACTAGTGACGATTTTTGATACAACGGGCACAATGATC 780
BSNT_04370___ 787 GGAGTTGCCGAGCAAGCCGGGCTGATGAAAAACAACAAGCTGCCTAACGT 836
|||||.||.||.||||||||.||.|||||||||....|||||||.||.||
BPUM_2646___y 781 GGAGTGGCTGAACAAGCCGGACTAATGAAAAACGGGCAGCTGCCAAAGGT 830
BSNT_04370___ 837 GCGAAAAGCGCTGCTTGCTGATTCAACAGCGACGACAGTAGGAGCTGTTT 886
.||.|.|||.|||||||||||.||..|.||.|||||..|.||..||.|.|
BPUM_2646___y 831 ACGCAGAGCCCTGCTTGCTGACTCTGCTGCAACGACGATTGGTTCTATGT 880
BSNT_04370___ 887 TCGGCACAAGTCCGACGACCGCATTTATCGAATCTTCCGCCGGTGTCGCA 936
|.||.|||||.||.||.||.||.|.|||.|||||.|||.|.||.||.||.
BPUM_2646___y 881 TTGGAACAAGCCCAACAACAGCTTATATTGAATCATCCTCTGGGGTTGCT 930
BSNT_04370___ 937 GCCGGGGGAAGAACGGGGCTTACGGCTTTGACTGTCGCGG---TGATGTT 983
||.||.||||||||.|||||.|||.||||.||.|||||.| ||.|..|
BPUM_2646___y 931 GCTGGTGGAAGAACCGGGCTAACGTCTTTAACAGTCGCTGCATTGTTTAT 980
BSNT_04370___ 984 TGCGGCTTCAATGTTTTTCAGTCCGCTTG-TCAGCGCCTTGTCCGGTATA 1032
||.|| ||.||||||||.|.||||||| |||| ||..|.||...|.||
BPUM_2646___y 981 TGTGG---CATTGTTTTTCGGCCCGCTTGTTCAG-GCTATTTCTTCTTTA 1026
BSNT_04370___ 1033 GCCG-CCATCACCTCGCCTGCTTTGATTATCGTCGGCAGCTTGATGATGG 1081
||| |||||||.||.||||.|.|.||.||.|||||..|||||||||||.
BPUM_2646___y 1027 -CCGTCCATCACATCACCTGTTCTCATCATTGTCGGGTGCTTGATGATGA 1075
BSNT_04370___ 1082 GCTCGGTTTCCAATATGAA----CTGGAAAGAGATGGACGAGGCATTTCC 1127
.|||.||.|| |.||| ||||||.|||.|.|||||.||||||||
BPUM_2646___y 1076 ACTCCGTGTC----ACGAATTCGCTGGAATGAGCTAGACGAAGCATTTCC 1121
BSNT_04370___ 1128 AGCGTTTCTCGTCATTCTGGCCATGCCTTTGACATCCAGCATTTCTACAG 1177
.||.|||||.||.|||||..|||||||..|||||||.||.|||||.||.|
BPUM_2646___y 1122 TGCTTTTCTTGTGATTCTTTCCATGCCGCTGACATCTAGTATTTCAACCG 1171
BSNT_04370___ 1178 GAATTGCGCTTGGCTTTATTTCATATCCGATCGTAAAAGCGGCGCGGGGA 1227
|||||.|.|||||.||||||||||||||..|.||.|||..|||....|||
BPUM_2646___y 1172 GAATTTCACTTGGATTTATTTCATATCCACTTGTGAAACTGGCAAAAGGA 1221
BSNT_04370___ 1228 AAATGGAGAGAGATTCATCCGCTCGTCATCGTTTTCGCCATTCTGTTTTT 1277
|||||||||||..|.|||...||.||..||.|.||.||||||.|.|||||
BPUM_2646___y 1222 AAATGGAGAGAAGTACATGTTCTTGTTCTCATCTTTGCCATTTTATTTTT 1271
BSNT_04370___ 1278 CATCCAGCTGTTTATTTTATAA------ 1299
|||.|||||.|||.|.|||.||
BPUM_2646___y 1272 CATACAGCTCTTTTTCTTAGAAGGATAA 1299
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