Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04369 and BPUM_2645

See Amino acid alignment / Visit BSNT_04369 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:55
# Commandline: needle
#    -asequence dna-align/BSNT_04369___pepV.1.24716.seq
#    -bsequence dna-align/BPUM_2645___ytjP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04369___pepV-BPUM_2645___ytjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04369___pepV-BPUM_2645___ytjP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04369___pepV
# 2: BPUM_2645___ytjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity:     951/1568 (60.7%)
# Similarity:   951/1568 (60.7%)
# Gaps:         334/1568 (21.3%)
# Score: 2833.5
# 
#
#=======================================

BSNT_04369___      1 ---------ATGAACTGGGAAGTTGAAGTGATCAGAAAAAAAGAGGATTT     41
                              |||||.|||||||.||||||.||..||||||||||.|||||
BPUM_2645___y      1 ATGGAAAAAATGAATTGGGAAGCTGAAGTCATACGAAAAAAAGACGATTT     50

BSNT_04369___     42 AATTCGTGATACGCAGGAATTTTTGAGAATCAACAGTGTCATGGACG---     88
                     .|||...||.||.||....|||||...|||..|.|||||..||||.|   
BPUM_2645___y     51 GATTAAGGACACACAATCTTTTTTACAAATTGAGAGTGTGCTGGATGAAG    100

BSNT_04369___     89 --------AAACAACCGCCGGACCCGGTAAACCGTTTGGAGAAGGGGTAA    130
                             |||.||           ||.||.||.|||||.|||     ||
BPUM_2645___y    101 AAGGTGGAAAAGAA-----------GGAAAGCCATTTGGTGAA-----AA    134

BSNT_04369___    131 A--CG--CCAGCCTGACTTCA----TTGCTGGAGCTTGGAGAAAAA----    168
                     |  ||  |.||||   |||||    .||||          ||||||    
BPUM_2645___y    135 AGTCGATCAAGCC---CTTCAGTATATGCT----------GAAAAAAGGG    171

BSNT_04369___    169 ------GAAGGCTTTACAACAAAAAATCTTGACGGCTTTGCAGGTCATAT    212
                           ||||||||.|||...||.|||.|.||.||||.||||||||||||
BPUM_2645___y    172 GAGGACGAAGGCTTCACAGTCAAGAATGTGGATGGCTATGCAGGTCATAT    221

BSNT_04369___    213 TGAATGGGGGGAGGGCGATGACATTATCGGCGTACTTTGCCATGTTGACG    262
                     |||||..||.||.|||||.||||||.|.||.||.||.||||||||.||||
BPUM_2645___y    222 TGAATATGGAGAAGGCGAAGACATTGTAGGTGTGCTCTGCCATGTGGACG    271

BSNT_04369___    263 TCGTGCCGCCGGGAGATGGGTGGACGA----GTGATCCATTTTCAGCTGA    308
                     |.||.||..|.||.||.||.|||||.|    |    ||.||||||||.||
BPUM_2645___y    272 TTGTACCTGCTGGTGACGGCTGGACAACCCCG----CCGTTTTCAGCAGA    317

BSNT_04369___    309 AATCCGCAACGGACGG--------ATTTATGCAAGGGGCGCCATTGATGA    350
                     .||    ||  ||  |        ||.|.||||.|.||||||||||||||
BPUM_2645___y    318 CAT----AA--GA--GAAAATAAAATATTTGCACGAGGCGCCATTGATGA    359

BSNT_04369___    351 CAAAGGCCCGACAATGGCGGCATTCTACGCGCTGAAAATCGTGAAAGA--    398
                     .|||||.||.||.||||||||.|||||||||||.||.||..|.|||||  
BPUM_2645___y    360 TAAAGGACCAACTATGGCGGCTTTCTACGCGCTAAAGATGTTAAAAGATA    409

BSNT_04369___    399 ----CATGAATTTGCCCCTGTC-CAAGCGAGTCAGAATGATTATCGGAAC    443
                         .|||||      .||||| .||..||.|| |||||||.||.|||||
BPUM_2645___y    410 CAGGGATGAA------GCTGTCAAAAAAGATTC-GAATGATCATTGGAAC    452

BSNT_04369___    444 AGATGAAGAAAGTGATTGGAGATGCGTAGAGCATTATTTCAAGCATGAAG    493
                     |||||||||||||||||||.|.||.||.||.|||||||||||||||||.|
BPUM_2645___y    453 AGATGAAGAAAGTGATTGGCGCTGTGTGGATCATTATTTCAAGCATGAGG    502

BSNT_04369___    494 AAATGCCAACAATGGGCTTTGCGCCTGACGCCGATTTTCCGATCATTAAT    543
                     ..|||||...|||.||.|||||.||.||.||.|||||||||||.|||.||
BPUM_2645___y    503 CGATGCCGCAAATTGGATTTGCCCCAGATGCTGATTTTCCGATTATTCAT    552

BSNT_04369___    544 GCGGAAAAAGGGATCATCGATGC-------TTCTTTACTTATTCCACACC    586
                     ||.||||||||||||||.|||||       |..|||||.|||        
BPUM_2645___y    553 GCTGAAAAAGGGATCATTGATGCCATTGTGTCATTTACATAT--------    594

BSNT_04369___    587 GTCCAAATCAAGCAGAACCAAAGGCAGTGCTTGTCTCGT-------TTCA    629
                        |||  ||..||||| |||...|||.|||...|.| |       ||||
BPUM_2645___y    595 ---CAA--CATACAGAA-CAACATCAGCGCTATACAC-TCAAGCAATTCA    637

BSNT_04369___    630 -ATCAGGCCTTCGTTTGAACATGGTGCCTGATGCTGCGGAAGCTGTCATT    678
                      ||||||..|.||..||||.||||||||.||   ||.||.|.|||.||.|
BPUM_2645___y    638 CATCAGGTATGCGGCTGAATATGGTGCCGGA---TGAGGCAACTGCCACT    684

BSNT_04369___    679 G----AAGGGCCGAAAA-----ATGAAGAGATTCTGTCTTCATTTAAAGA    719
                     |    |..|||..||.|     |||..||         .||| |||||.|
BPUM_2645___y    685 GTGACAGCGGCACAAGACCACGATGTTGA---------ATCA-TTAAAAA    724

BSNT_04369___    720 CA-----------------TGCTCCGCACGACGGACCAA--AA-----AG    745
                     ||                 ||||          || |||  ||     ||
BPUM_2645___y    725 CAGCTTTTGAAGCATATCTTGCT----------GA-CAATCAATTATCAG    763

BSNT_04369___    746 GGGA---------AGCTGC-AATAGAGAACGGACAGCTCATTTT-----G    780
                     |.||         .||.|| |||   |||| .|||..|||..||     |
BPUM_2645___y    764 GTGAGGTAAAGATTGCAGCGAAT---GAAC-TACATTTCACATTAAAAGG    809

BSNT_04369___    781 CGTATGTACGGTCTTTCCTGCCATGCGATGGAACC-GAACAATGGGATCA    829
                     ||.||   |.||        .|||||.|||||.|| |.| |||||.||.|
BPUM_2645___y    810 CGAAT---CAGT--------TCATGCCATGGAGCCTGCA-AATGGCATAA    847

BSNT_04369___    830 ATGCCGGTATT-TTATTGTGCGAATTTCTCCAGCAGACTGAGCTTGACGA    878
                     ||||.||.||| .|||  .||.||||||..|||..||             
BPUM_2645___y    848 ATGCGGGCATTCATAT--GGCCAATTTCCTCAGTGGA-------------    882

BSNT_04369___    879 TGCAGGAAAGCGGTTTGTGCAAG------TTG---TGACAGATAAGTTCT    919
                       ||.|||     ||.|..||||      |||   |.||       ||||
BPUM_2645___y    883 --CAAGAA-----TTAGATCAAGACGGGCTTGCTTTTAC-------TTCT    918

BSNT_04369___    920 CAGGT-------------------GATACAAGAGGAAAAAAACTGGACAT    950
                     ||..|                   |||||||||||.|||||.||||..||
BPUM_2645___y    919 CAAATCAACGCTTTATTTGATCAAGATACAAGAGGGAAAAAGCTGGGGAT    968

BSNT_04369___    951 CGACTGTGAGGATGAAATCAGCGGTGAGCTGACATTAAATGTCGGAACAC   1000
                     .|..||..|.|||||.||.|||||.||..|.||.||||||||.||.||..
BPUM_2645___y    969 TGCTTGCAAAGATGATATTAGCGGAGATTTAACTTTAAATGTTGGCACGA   1018

BSNT_04369___   1001 TGCGCTATAAAGAAGGGCAAGGAGGCG-AGCTCGGGATCAATATCCGCTA   1049
                     |.|||||||.|.|| ..|.|.||.||| ||||.||..|.|||.|||||||
BPUM_2645___y   1019 TCCGCTATACACAA-AACGAAGAAGCGAAGCTAGGATTAAATGTCCGCTA   1067

BSNT_04369___   1050 TCCTGTGACAGCAGAAAGC------------AAAGCGATTCGCG-ATGCA   1086
                     |||.|||||||||||..||            ||||.|||   || |.|||
BPUM_2645___y   1068 TCCAGTGACAGCAGATGGCAAGGACGTTAAAAAAGGGAT---CGAAGGCA   1114

BSNT_04369___   1087 TTCGAAAGTG------CATCTG-AATTTGATCTGGGAGAATTCAAAGACA   1129
                     |  .||||.|      |.|||| ||||||               |.||||
BPUM_2645___y   1115 T--CAAAGGGGCCACCCTTCTGAAATTTG---------------ACGACA   1147

BSNT_04369___   1130 GCAAGCCGCATCACGTGACCGCAGATCATCCGTTAGTCAAAACCCTGCAA   1179
                     ||...|||||||||||..|...|||||||||..|.||.|||||..|||||
BPUM_2645___y   1148 GCCCTCCGCATCACGTCTCAAAAGATCATCCACTTGTGAAAACATTGCAA   1197

BSNT_04369___   1180 AAGGTTTATGAAGG--CCAGCTGGGTAAAAA---AGCTGACTTAATCTCA   1224
                     ..|||.|||| |||  |.|.||||    |||   ||||.|..|.||..||
BPUM_2645___y   1198 CGGGTATATG-AGGAACAAACTGG----AAATCCAGCTCATCTGATTGCA   1242

BSNT_04369___   1225 ATCGGCGGGGGGACATATGCGAGATCCTTAAAAGCCGGTGTCGCGTTCGG   1274
                     ||.||.||.|||||.|||||.|||||.|||.||||.||.||.||.||.||
BPUM_2645___y   1243 ATTGGTGGAGGGACGTATGCAAGATCTTTAGAAGCGGGCGTTGCCTTTGG   1292

BSNT_04369___   1275 CCCGCTGTTCCCCGGACGCCCTGACAGCGCACACCAAAAGGATGAATATA   1324
                     .||.||.|||||.||..|.||.||..|||||||.||.|||||||||||||
BPUM_2645___y   1293 TCCTCTCTTCCCTGGCAGACCAGATTGCGCACATCAGAAGGATGAATATA   1342

BSNT_04369___   1325 TCGAAATTGATGACCTGCTGAGATCGACAGCGTTATATGCTCAGGCCATT   1374
                     |||||||.||.||.||.||.|||.|.||.||..|||||||.||.|||||.
BPUM_2645___y   1343 TCGAAATCGACGATCTACTAAGAGCAACCGCACTATATGCACAAGCCATG   1392

BSNT_04369___   1375 TACGAGCTTGCAAAATAA   1392
                     ||.||..|.||||||||.
BPUM_2645___y   1393 TATGAATTGGCAAAATAG   1410


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.