Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04369 and BPUM_2645
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04369___pepV.1.24716.seq
# -bsequence dna-align/BPUM_2645___ytjP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04369___pepV-BPUM_2645___ytjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04369___pepV-BPUM_2645___ytjP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04369___pepV
# 2: BPUM_2645___ytjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity: 951/1568 (60.7%)
# Similarity: 951/1568 (60.7%)
# Gaps: 334/1568 (21.3%)
# Score: 2833.5
#
#
#=======================================
BSNT_04369___ 1 ---------ATGAACTGGGAAGTTGAAGTGATCAGAAAAAAAGAGGATTT 41
|||||.|||||||.||||||.||..||||||||||.|||||
BPUM_2645___y 1 ATGGAAAAAATGAATTGGGAAGCTGAAGTCATACGAAAAAAAGACGATTT 50
BSNT_04369___ 42 AATTCGTGATACGCAGGAATTTTTGAGAATCAACAGTGTCATGGACG--- 88
.|||...||.||.||....|||||...|||..|.|||||..||||.|
BPUM_2645___y 51 GATTAAGGACACACAATCTTTTTTACAAATTGAGAGTGTGCTGGATGAAG 100
BSNT_04369___ 89 --------AAACAACCGCCGGACCCGGTAAACCGTTTGGAGAAGGGGTAA 130
|||.|| ||.||.||.|||||.||| ||
BPUM_2645___y 101 AAGGTGGAAAAGAA-----------GGAAAGCCATTTGGTGAA-----AA 134
BSNT_04369___ 131 A--CG--CCAGCCTGACTTCA----TTGCTGGAGCTTGGAGAAAAA---- 168
| || |.|||| ||||| .|||| ||||||
BPUM_2645___y 135 AGTCGATCAAGCC---CTTCAGTATATGCT----------GAAAAAAGGG 171
BSNT_04369___ 169 ------GAAGGCTTTACAACAAAAAATCTTGACGGCTTTGCAGGTCATAT 212
||||||||.|||...||.|||.|.||.||||.||||||||||||
BPUM_2645___y 172 GAGGACGAAGGCTTCACAGTCAAGAATGTGGATGGCTATGCAGGTCATAT 221
BSNT_04369___ 213 TGAATGGGGGGAGGGCGATGACATTATCGGCGTACTTTGCCATGTTGACG 262
|||||..||.||.|||||.||||||.|.||.||.||.||||||||.||||
BPUM_2645___y 222 TGAATATGGAGAAGGCGAAGACATTGTAGGTGTGCTCTGCCATGTGGACG 271
BSNT_04369___ 263 TCGTGCCGCCGGGAGATGGGTGGACGA----GTGATCCATTTTCAGCTGA 308
|.||.||..|.||.||.||.|||||.| | ||.||||||||.||
BPUM_2645___y 272 TTGTACCTGCTGGTGACGGCTGGACAACCCCG----CCGTTTTCAGCAGA 317
BSNT_04369___ 309 AATCCGCAACGGACGG--------ATTTATGCAAGGGGCGCCATTGATGA 350
.|| || || | ||.|.||||.|.||||||||||||||
BPUM_2645___y 318 CAT----AA--GA--GAAAATAAAATATTTGCACGAGGCGCCATTGATGA 359
BSNT_04369___ 351 CAAAGGCCCGACAATGGCGGCATTCTACGCGCTGAAAATCGTGAAAGA-- 398
.|||||.||.||.||||||||.|||||||||||.||.||..|.|||||
BPUM_2645___y 360 TAAAGGACCAACTATGGCGGCTTTCTACGCGCTAAAGATGTTAAAAGATA 409
BSNT_04369___ 399 ----CATGAATTTGCCCCTGTC-CAAGCGAGTCAGAATGATTATCGGAAC 443
.||||| .||||| .||..||.|| |||||||.||.|||||
BPUM_2645___y 410 CAGGGATGAA------GCTGTCAAAAAAGATTC-GAATGATCATTGGAAC 452
BSNT_04369___ 444 AGATGAAGAAAGTGATTGGAGATGCGTAGAGCATTATTTCAAGCATGAAG 493
|||||||||||||||||||.|.||.||.||.|||||||||||||||||.|
BPUM_2645___y 453 AGATGAAGAAAGTGATTGGCGCTGTGTGGATCATTATTTCAAGCATGAGG 502
BSNT_04369___ 494 AAATGCCAACAATGGGCTTTGCGCCTGACGCCGATTTTCCGATCATTAAT 543
..|||||...|||.||.|||||.||.||.||.|||||||||||.|||.||
BPUM_2645___y 503 CGATGCCGCAAATTGGATTTGCCCCAGATGCTGATTTTCCGATTATTCAT 552
BSNT_04369___ 544 GCGGAAAAAGGGATCATCGATGC-------TTCTTTACTTATTCCACACC 586
||.||||||||||||||.||||| |..|||||.|||
BPUM_2645___y 553 GCTGAAAAAGGGATCATTGATGCCATTGTGTCATTTACATAT-------- 594
BSNT_04369___ 587 GTCCAAATCAAGCAGAACCAAAGGCAGTGCTTGTCTCGT-------TTCA 629
||| ||..||||| |||...|||.|||...|.| | ||||
BPUM_2645___y 595 ---CAA--CATACAGAA-CAACATCAGCGCTATACAC-TCAAGCAATTCA 637
BSNT_04369___ 630 -ATCAGGCCTTCGTTTGAACATGGTGCCTGATGCTGCGGAAGCTGTCATT 678
||||||..|.||..||||.||||||||.|| ||.||.|.|||.||.|
BPUM_2645___y 638 CATCAGGTATGCGGCTGAATATGGTGCCGGA---TGAGGCAACTGCCACT 684
BSNT_04369___ 679 G----AAGGGCCGAAAA-----ATGAAGAGATTCTGTCTTCATTTAAAGA 719
| |..|||..||.| |||..|| .||| |||||.|
BPUM_2645___y 685 GTGACAGCGGCACAAGACCACGATGTTGA---------ATCA-TTAAAAA 724
BSNT_04369___ 720 CA-----------------TGCTCCGCACGACGGACCAA--AA-----AG 745
|| |||| || ||| || ||
BPUM_2645___y 725 CAGCTTTTGAAGCATATCTTGCT----------GA-CAATCAATTATCAG 763
BSNT_04369___ 746 GGGA---------AGCTGC-AATAGAGAACGGACAGCTCATTTT-----G 780
|.|| .||.|| ||| |||| .|||..|||..|| |
BPUM_2645___y 764 GTGAGGTAAAGATTGCAGCGAAT---GAAC-TACATTTCACATTAAAAGG 809
BSNT_04369___ 781 CGTATGTACGGTCTTTCCTGCCATGCGATGGAACC-GAACAATGGGATCA 829
||.|| |.|| .|||||.|||||.|| |.| |||||.||.|
BPUM_2645___y 810 CGAAT---CAGT--------TCATGCCATGGAGCCTGCA-AATGGCATAA 847
BSNT_04369___ 830 ATGCCGGTATT-TTATTGTGCGAATTTCTCCAGCAGACTGAGCTTGACGA 878
||||.||.||| .||| .||.||||||..|||..||
BPUM_2645___y 848 ATGCGGGCATTCATAT--GGCCAATTTCCTCAGTGGA------------- 882
BSNT_04369___ 879 TGCAGGAAAGCGGTTTGTGCAAG------TTG---TGACAGATAAGTTCT 919
||.||| ||.|..|||| ||| |.|| ||||
BPUM_2645___y 883 --CAAGAA-----TTAGATCAAGACGGGCTTGCTTTTAC-------TTCT 918
BSNT_04369___ 920 CAGGT-------------------GATACAAGAGGAAAAAAACTGGACAT 950
||..| |||||||||||.|||||.||||..||
BPUM_2645___y 919 CAAATCAACGCTTTATTTGATCAAGATACAAGAGGGAAAAAGCTGGGGAT 968
BSNT_04369___ 951 CGACTGTGAGGATGAAATCAGCGGTGAGCTGACATTAAATGTCGGAACAC 1000
.|..||..|.|||||.||.|||||.||..|.||.||||||||.||.||..
BPUM_2645___y 969 TGCTTGCAAAGATGATATTAGCGGAGATTTAACTTTAAATGTTGGCACGA 1018
BSNT_04369___ 1001 TGCGCTATAAAGAAGGGCAAGGAGGCG-AGCTCGGGATCAATATCCGCTA 1049
|.|||||||.|.|| ..|.|.||.||| ||||.||..|.|||.|||||||
BPUM_2645___y 1019 TCCGCTATACACAA-AACGAAGAAGCGAAGCTAGGATTAAATGTCCGCTA 1067
BSNT_04369___ 1050 TCCTGTGACAGCAGAAAGC------------AAAGCGATTCGCG-ATGCA 1086
|||.|||||||||||..|| ||||.||| || |.|||
BPUM_2645___y 1068 TCCAGTGACAGCAGATGGCAAGGACGTTAAAAAAGGGAT---CGAAGGCA 1114
BSNT_04369___ 1087 TTCGAAAGTG------CATCTG-AATTTGATCTGGGAGAATTCAAAGACA 1129
| .||||.| |.|||| |||||| |.||||
BPUM_2645___y 1115 T--CAAAGGGGCCACCCTTCTGAAATTTG---------------ACGACA 1147
BSNT_04369___ 1130 GCAAGCCGCATCACGTGACCGCAGATCATCCGTTAGTCAAAACCCTGCAA 1179
||...|||||||||||..|...|||||||||..|.||.|||||..|||||
BPUM_2645___y 1148 GCCCTCCGCATCACGTCTCAAAAGATCATCCACTTGTGAAAACATTGCAA 1197
BSNT_04369___ 1180 AAGGTTTATGAAGG--CCAGCTGGGTAAAAA---AGCTGACTTAATCTCA 1224
..|||.|||| ||| |.|.|||| ||| ||||.|..|.||..||
BPUM_2645___y 1198 CGGGTATATG-AGGAACAAACTGG----AAATCCAGCTCATCTGATTGCA 1242
BSNT_04369___ 1225 ATCGGCGGGGGGACATATGCGAGATCCTTAAAAGCCGGTGTCGCGTTCGG 1274
||.||.||.|||||.|||||.|||||.|||.||||.||.||.||.||.||
BPUM_2645___y 1243 ATTGGTGGAGGGACGTATGCAAGATCTTTAGAAGCGGGCGTTGCCTTTGG 1292
BSNT_04369___ 1275 CCCGCTGTTCCCCGGACGCCCTGACAGCGCACACCAAAAGGATGAATATA 1324
.||.||.|||||.||..|.||.||..|||||||.||.|||||||||||||
BPUM_2645___y 1293 TCCTCTCTTCCCTGGCAGACCAGATTGCGCACATCAGAAGGATGAATATA 1342
BSNT_04369___ 1325 TCGAAATTGATGACCTGCTGAGATCGACAGCGTTATATGCTCAGGCCATT 1374
|||||||.||.||.||.||.|||.|.||.||..|||||||.||.|||||.
BPUM_2645___y 1343 TCGAAATCGACGATCTACTAAGAGCAACCGCACTATATGCACAAGCCATG 1392
BSNT_04369___ 1375 TACGAGCTTGCAAAATAA 1392
||.||..|.||||||||.
BPUM_2645___y 1393 TATGAATTGGCAAAATAG 1410
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