Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04367 and BPUM_2642
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_04367___ytlP.1.24716.seq
# -bsequence dna-align/BPUM_2642___ytlP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04367___ytlP-BPUM_2642___ytlP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04367___ytlP-BPUM_2642___ytlP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04367___ytlP
# 2: BPUM_2642___ytlP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 656
# Identity: 336/656 (51.2%)
# Similarity: 336/656 (51.2%)
# Gaps: 208/656 (31.7%)
# Score: 702.5
#
#
#=======================================
BSNT_04367___ 1 ATGCCAGATATACGGCCTCATTATTTCATCGGCGTTCCCATACCTGAGGG 50
.||.||||.|..|| |||||||||.||.||..|||..||.|||||...
BPUM_2642___y 1 GTGTCAGAGAACCG---TCATTATTTTATTGGGATTCATATCCCTGAACA 47
BSNT_04367___ 51 AATTG-----CAAATCCGATCTACCAGGCTGCGAAAAACGA-ACCGAT-- 92
|.||| ||||| .|||||.|| |..|||
BPUM_2642___y 48 ACTTGCGTCTCAAAT-----------------TAAAAAGGACATTGATCA 80
BSNT_04367___ 93 ---------ATTGACGTTTCAAAAATGGGTGCAC----CCGCTTGACTAT 129
|.||.|.|||||||||||| || ||.|.|||.|||
BPUM_2642___y 81 AAGAAGCGGACTGTCTTTTCAAAAATGG----ACAGCACCACATGATTAT 126
BSNT_04367___ 130 CATATCACGTTAATTTTTCTCGGAGC---GGCGGATGAGACAC--AAATA 174
|||.|.||.||.||.|||.|.||.|| ..|.||.|| ||.| ||| |
BPUM_2642___y 127 CATGTGACCTTGATCTTTTTAGGGGCCATTTCAGAAGA-ACGCTTAAA-A 174
BSNT_04367___ 175 AAGA---------AGCTTGAAGGTTCGCTAGCAGAGATTGCTTCAGAAAT 215
|||| .||||| ||||.|.|| ||.|| |||
BPUM_2642___y 175 AAGATCATCGAGCTGCTTG-AGGTCCTCT--CAAAG---------GAA-- 210
BSNT_04367___ 216 TGACC----CATTTTCAATTGAGTTTGACAAGATAGATGTATTCGGCGAC 261
.|| ||||||||.|.|||.| ||..||.|| |.|||
BPUM_2642___y 211 --GCCGCTGCATTTTCACTAGAGCT------GAATGAGGT-----GGGAC 247
BSNT_04367___ 262 -----CGCA-GAAGG-----CCGCGCGT-TTTACATCTGGAGCCAAA--- 296
.||| ||||| |||.|.|| ||| |.|| ||||
BPUM_2642___y 248 AGTTTGGCACGAAGGAACGCCCGAGAGTCTTT---TTTG----CAAAACC 290
BSNT_04367___ 297 ----GAAA---AACAAAACGCT--TGAT----AGACTGCGGGAACATACG 333
|||| ||| |||| ||.| ||| |||.|...|
BPUM_2642___y 291 TGATGAAAGTGAAC----CGCTCATGCTATTAAGA------GAAAAGGTG 330
BSNT_04367___ 334 AAGCAGGCTGTCCT-TCAGGCCGGCTTTCAAGTGGAAAAAAGACCGTATC 382
||..|.||.||..| ||| ||.||...||..||.|||||.|||||||.||
BPUM_2642___y 331 AAAGAAGCCGTATTGTCA-GCAGGACATCCTGTTGAAAAGAGACCGTTTC 379
BSNT_04367___ 383 ATCCTCATATGACGCTGGCAAGAAAATGGACAGGC-GAAAATGGATTTCC 431
||||.||||||||..|.||..|.||||||| |.|| ||..||...|||.|
BPUM_2642___y 380 ATCCGCATATGACAATTGCGCGTAAATGGA-ATGCGGATCATTCTTTTGC 428
BSNT_04367___ 432 AGCTCATGTTCCGTTT---GAAAGCGGC----------GAAGTTTCGATG 468
||..||.|..|| ||| .||||.|.| ||.|||||.|..
BPUM_2642___y 429 AGAACAAGCGCC-TTTACGCAAAGAGCCATACGTGATAGAGGTTTCTAGT 477
BSNT_04367___ 469 ATGGCTGAACGATTTTCGCTCTTTCAAATACACTTGAACCAATCACCAAA 518
||..|| ||.|.|.|||||| .|||||.
BPUM_2642___y 478 ATCACT------------CTATATGAAATAC------------GACCAAG 503
BSNT_04367___ 519 ATACGAGGAAA--------TAT-------TCA---AATTTCAATTATCTT 550
| |||| ||| ||| |||||..|.|| |.|
BPUM_2642___y 504 A------GAAACCCCGCGTTATTACGCAATCAAACAATTTGCACTA-CAT 546
BSNT_04367___ 551 AA---- 552
||
BPUM_2642___y 547 AAATGA 552
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