Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04366 and BPUM_2641
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_04366___ytlQ.1.24716.seq
# -bsequence dna-align/BPUM_2641___ytlQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04366___ytlQ-BPUM_2641___ytlQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04366___ytlQ-BPUM_2641___ytlQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04366___ytlQ
# 2: BPUM_2641___ytlQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity: 620/1031 (60.1%)
# Similarity: 620/1031 (60.1%)
# Gaps: 211/1031 (20.5%)
# Score: 1653.0
#
#
#=======================================
BSNT_04366___ 1 ATGGCACAAATCATCAAAATTCATGATTATATATCAAGATATGAGCTTGA 50
|||||.|||||.|||||||||||.||||||.|||||.|.|||||.|..||
BPUM_2641___y 1 ATGGCGCAAATTATCAAAATTCAAGATTATGTATCACGCTATGAACAAGA 50
BSNT_04366___ 51 TCCGTACCATTATATCAACCAGTTTGTACGTCTGAAAAAAGAGCGCTGGC 100
.|||.|.|||||.|||||.||.|||.|.||..|||||||..|..|.|||
BPUM_2641___y 51 CCCGCATCATTACATCAATCAATTTATTCGATTGAAAAAGCAAAGGTGG- 99
BSNT_04366___ 101 TTTCACTAG-TAGAAGCAGCG--------GAACGA--CAGCA------TG 133
.||.|| ||.||..|||| ||| || ||||| ||
BPUM_2641___y 100 ---GACGAGTTAAAAAAAGCGTCAAAAGAGAA-GACGCAGCATTCATTTG 145
BSNT_04366___ 134 AAGAAAGGCAAGCCAGTGCTGAAGAA---CCGGAAC---CGGTGCAGAAA 177
|..|| |.|.|||||.|| ||.|||| .||.|.|.||.
BPUM_2641___y 146 ACCAA---------ATTTCTGAACAAGCGCCTGAACAAGAGGAGGAAAAG 186
BSNT_04366___ 178 CGAAAAAAATTTTCATTGAAAAG-AAGAAAAGAAGAGATAAAAGCCGATA 226
.||||.|||||.||.||.||.|| |||.||| ||| |||||||||
BPUM_2641___y 187 AGAAAGAAATTCTCCTTAAAGAGAAAGCAAA-AAG------AAGCCGATA 229
BSNT_04366___ 227 TACAAGAAGAGAGAC---ACC--AATGGTTTGAGGACGA---AGAAGATA 268
| .|||||| || || ||| |.|..|||.| |||| |..|||||
BPUM_2641___y 230 T-GAAGAAG-GA-ACGGGACCTAAGTCTTTTTA--ACGAGCCAACAGATA 274
BSNT_04366___ 269 TTCATGTAAGGCTCCCGAAGAGCAGGGTGGC------------------- 299
| ||||||.||||.|
BPUM_2641___y 275 T-----------------AGAGCAAGGTGTCTTTACAAACGTTCCTACTG 307
BSNT_04366___ 300 ----------GCTTGC-TTCTTTTTATAAAAGA-CATTTATATGATTTTC 337
||| | |||.||||.|.||.|| |||.||||||||.|||
BPUM_2641___y 308 ATGAAACGAAGCT--CATTCATTTTTTTAAGGATCATCTATATGATGTTC 355
BSNT_04366___ 338 AGCTCAAATGGGCAAGCTCTACTCTTTCAGAAATATCTCAAC----TCTC 383
|..|.||||||||.|||||.||..|||| ..|.||.||||| ||.|
BPUM_2641___y 356 AATTAAAATGGGCGAGCTCGACGATTTC--CCACATTTCAACCGTTTCCC 403
BSNT_04366___ 384 AAACCA--------GGTGAA--GCAGGACCGCAT-TTTGCGTTATCTGAC 422
|...|| |.|||| ||.| ||||| .|||| ||
BPUM_2641___y 404 ATCACATTCGGTATGATGAAATGCTG---CGCATGCTTGC--TA------ 442
BSNT_04366___ 423 CCAGCAGCTGCCTGATTCTTATTTTATTATGTATAAGCCTGTGCTGAAAA 472
.||||||.||.|||||.||||||.|.|||||.||.||.||||||...|
BPUM_2641___y 443 --GGCAGCTTCCGGATTCATATTTTGTGATGTACAAACCGGTGCTGCTCA 490
BSNT_04366___ 473 TTCAGCAGGCGGCGGTTGAATTAAG--CATTGTGATTATTTCTCCTCTGG 520
||||..|.||.|.|.|.||||||.| || ||..|.|||.|.||.||||
BPUM_2641___y 491 TTCAAAAAGCAGAGATGGAATTATGTCCA--GTCCTCATTACGCCGCTGG 538
BSNT_04366___ 521 AA---ATTTATTGCGTTTCTTTTTTAGAGGCTGAGGAAGACAGTGTCTAC 567
|| ||||.|| |.||.|||.|||||||.||....|||||.||.||.
BPUM_2641___y 539 AAGTGATTTGTT---TATCCTTTCTAGAGGCAGAACCTGACAGCGTATAT 585
BSNT_04366___ 568 ATAGGGTCTAAAAATCGTTTTTGGGACAA------GAA----AACAGCCT 607
||.||..|.||..|.|||||||||||.|| ||| || |||..
BPUM_2641___y 586 ATCGGAACGAAGGAACGTTTTTGGGAAAAGCGGGCGAATGGGAA-AGCGG 634
BSNT_04366___ 608 CTCAGACTGCATCAGTGTTAAATCCAGGGCTT-----AGCCTGTTTCGTA 652
.|||| ||.||.||.|||| ||| |||| ||| ||
BPUM_2641___y 635 TTCAG------TCCGTTTTGAATC-----CTTGCGCAAGCC---TTC-TA 669
BSNT_04366___ 653 CG----GACTCGGTTGTGTCAAAGATCGTAAAGGAAAAACAGGC-----T 693
|| |.|.|.||.|||||||||||..||.||.||| || .
BPUM_2641___y 670 CGCTCTGGCACCGTCGTGTCAAAGATTTTACAGCAAA-----GCGGTGTC 714
BSNT_04366___ 694 GAGATTCCGGTTCGA--AAATTGCTTCTGAGCAGAACGTCGTACATCGA- 740
||..||||.|| || |||.|.||..|.|||.|.||.||.||.||.||
BPUM_2641___y 715 GATCTTCCTGT--GAAGAAAATCCTGATCAGCCGTACCTCTTATATTGAC 762
BSNT_04366___ 741 TTACCCGGAGCCGCCATACGGCTTAGAAATAGCGGATAAGCGGAGCGCGG 790
||| |||||....||||||||..|.||..|.|..||||||..||..||||
BPUM_2641___y 763 TTA-CCGGAAGTTCCATACGGGATGGAGGTTGTCGATAAGAAGAAGGCGG 811
BSNT_04366___ 791 AAGAATGGATTGAGCGGCAGAAGAAAAACACTGCTCCGATCAAA-CATCA 839
||||.|||.||||...||||..||||||.||.||||||| |||| |||||
BPUM_2641___y 812 AAGATTGGTTTGAAAAGCAGCGGAAAAATACCGCTCCGA-CAAAGCATCA 860
BSNT_04366___ 840 TCAGGTAAAGGCTGCAAAGGCTCTATTGTCTTACTGCATG-----TCTGA 884
.||..|.|||||..||||.|| |||| |||.|| .||| ||.||
BPUM_2641___y 861 GCAATTTAAGGCGACAAAAGC---ATTG-CTTGCT-TATGGTGAATCAGA 905
BSNT_04366___ 885 CTCCTATCGCAGACAGGAGTGGCTGGAGTAA 915
|..|.|..|.||.|||||.|||||.||.|||
BPUM_2641___y 906 CAGCAAAAGAAGGCAGGAATGGCTCGATTAA 936
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