Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04364 and BPUM_2640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_04364___ytlR.1.24716.seq
# -bsequence dna-align/BPUM_2640___ytlR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04364___ytlR-BPUM_2640___ytlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04364___ytlR-BPUM_2640___ytlR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04364___ytlR
# 2: BPUM_2640___ytlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1069
# Identity: 597/1069 (55.8%)
# Similarity: 597/1069 (55.8%)
# Gaps: 278/1069 (26.0%)
# Score: 1462.0
#
#
#=======================================
BSNT_04364___ 1 ATGAGCCATTGGTTTTTTATTATTAATCCGACAGCAGGACATCGAAACGG 50
||||...|.||||..|||||..|||||||..|||||||||||.||||.||
BPUM_2640___y 1 ATGAATGAATGGTACTTTATCGTTAATCCAGCAGCAGGACATGGAAAAGG 50
BSNT_04364___ 51 CCTGCGTGTTTGGAAGTCCATTCAAAAAGAATTGATCAAACGAAAGGTTG 100
.||.|||...||||.|..|||..|.|||||||| ||.||||||.|
BPUM_2640___y 51 ACTTCGTACATGGAGGAGCATAGAGAAAGAATT------ACAAAAGGTAG 94
BSNT_04364___ 101 AG------CACCGTTCATTTTTAACTGAACATCCGGGACACGCCGAGGTG 144
|| .|.||.||.|||.|.||..|.|||...||.||.||.||.||.
BPUM_2640___y 95 AGATCTCATATCGATCGTTTCTCACCCAGCATGAAGGTCATGCAGAAGTA 144
BSNT_04364___ 145 CTCGCCAGACAGATTTCAACG--ATACAGGAATATAAGCTGAAGCGCCTG 192
.|.||.|||||.||| |.|| ||.||.||..|.|.|||||||||||||
BPUM_2640___y 145 TTGGCAAGACAAATT--AGCGCCATGCAAGATGACAGGCTGAAGCGCCTG 192
BSNT_04364___ 193 ATCGTCATTGGCGGAGACGGAACCATGCATGAAGTTGTCAACGGGCTGAA 242
||.||||||||.||.|||||.|||||.||||||||..|.|| .||||.||
BPUM_2640___y 193 ATTGTCATTGGTGGTGACGGCACCATTCATGAAGTCCTGAA-TGGCTTAA 241
BSNT_04364___ 243 AG---ATGTTGACGATATTGAGCTGAGCTTTGTGCCGGCGGGCGCATAT- 288
|| ||| ||..||.|..||||.||||||||.||.||.|| .||| |
BPUM_2640___y 242 AGGAAATG--GATCATGTGCAGCTAAGCTTTGTCCCCGCTGG-TCAT-TG 287
BSNT_04364___ 289 -AATGATTTTTCGCG----AGG--------ATTC----------TCTATT 315
|||||| ||| ||| ||.| |.|..|
BPUM_2640___y 288 GAATGAT-----GCGGCGAAGGGCCTTGGCATCCATCGTCAAGATGTCCT 332
BSNT_04364___ 316 AAAAAAATCGATCTGATACAGGAAATCAAGAAGGTAAAGCGCCCGTTAAC 365
||||.||..|| ||||.||| |||..||.|| |.||
BPUM_2640___y 333 AAAAGAAGTGA----------GAAAGCAA-AAGAGAATGC------TCAC 365
BSNT_04364___ 366 AAGAACCTTTCATTTAGGGAGCGTCAATTTCC-TTCAGGAT-------AA 407
.|.|||.|||..|.|.|| .||| ||||.||| ||
BPUM_2640___y 366 CAAAACATTTTCTCTCGG----------CTCCTTTCAAGATCACGCAGAA 405
BSNT_04364___ 408 A--TCACAGATTCTTTAT-TTTATGAATCATATCGG-GATCGGGTTTGAC 453
| .||||| |.|.||.| |||.|.||||||||||| |.| ||||||||.
BPUM_2640___y 406 AGCGCACAG-TCCGTTCTCTTTCTCAATCATATCGGTGCT-GGGTTTGAT 453
BSNT_04364___ 454 GCATATGT----------------CAAT--------AAAAAGGCGATGGA 479
|||.|||| ||.| |||||| ||
BPUM_2640___y 454 GCACATGTGCTTAGGAAAACAGTGCATTTTAGAGGGAAAAAG----TG-- 497
BSNT_04364___ 480 ATTTCCGTTGAGACGGGTTTTTCTTTTTCTCCGCCTTCGATTTCTTGTGT 529
|.|||.|||| ||..|.|||.|.|||.|..|.|
BPUM_2640___y 498 ------GCTGAAACGG------------CTAAGGCTTGGGTTTATCATCT 529
BSNT_04364___ 530 ATCCGCTTTCTCATTTGCACGCTTC-----GGCAACCTTTAAGCCGTTTA 574
|.|||| |.|||||| |.|..||| || .|.|||||||||||
BPUM_2640___y 530 ACCCGC--TGTCATTT-CTCCATTCTTTATGG--TCTTTTAAGCCGTT-- 572
BSNT_04364___ 575 CGTTAGCTTGTAC----GACGGAAGACGAGACGCGCGAA----TTTCATG 616
|| |.||||.|| .|..|||.|||||| .||| ||||...
BPUM_2640___y 573 CG--ACCTTGCACTGTTTATTGAAAACGAGA----AGAAGGTCTTTCGCC 616
BSNT_04364___ 617 ATGTCTGGTTTGCGGTTGTATCCAACCATCCGTTTTACGGGGGAGGCATG 666
|.||.|||||||.|.||||||..||.||.||.|.||||||.||.||..||
BPUM_2640___y 617 AAGTGTGGTTTGTGATTGTATGTAATCACCCCTATTACGGAGGCGGGCTG 666
BSNT_04364___ 667 AAGGCGGCGCCCCTAGCAAATCCGCGCGAGAAGACA-------TTTGATA 709
.|.||.||||| || ||.|..|||| |||||| |||.| |
BPUM_2640___y 667 GAAGCAGCGCC---AG-AAGTGAGCGC---AAGACAGCCGGGCTTTCA-A 708
BSNT_04364___ 710 TCGTAATCGTTGAAAACCAGCCGTTTTTGAA-------AAAATATTGGCT 752
.|| .||||||..| ||| .|||||| |||.| |||
BPUM_2640___y 709 ACG--CTCGTTGTCA--CAG----ATTTGAATCCATTTAAAGT----GCT 746
BSNT_04364___ 753 TTTATGTCT------CATGGCATTTGGAAAACA---TACAAAGATGGATG 793
.||.|.||| .||||.||||.|.||.|| |..| |||.|.|
BPUM_2640___y 747 CTTGTTTCTAAGTGCAATGGTATTTCGTAAGCACCTTGGA---ATGAAGG 793
BSNT_04364___ 794 GCGTTACGATGTTT---------AAAGCGAA---GGA--CATTACATTTT 829
|.|||||..||||| .|||||.| ||| ||
BPUM_2640___y 794 GAGTTACCCTGTTTCAGCACGAGGAAGCGTACTTGGAGGCA--------- 834
BSNT_04364___ 830 ACACGAAGGACAAAATCCCGTTCCATGCTGACGGAGAATTCATGGGCACT 879
||.||| ||||||...||.|||||.||.||.|||.|.||.||..|.
BPUM_2640___y 835 ----GACGGA-AAAATCATATTTCATGCAGATGGTGAAGTAATTGGTGCA 879
BSNT_04364___ 880 AC-CCCGTTT---------CGTCTGGCATCTAG-TCCTTCACCCCTAAGA 918
|| ||.|||| ||..|| ||| | |||||
BPUM_2640___y 880 ACACCTGTTTTTGTGAAGGCGAGTG--ATC--GCTCCTT----------- 914
BSNT_04364___ 919 ATCAAAA-------CATAA 930
|||| |.|||
BPUM_2640___y 915 ---AAAATTACGTGCTTAA 930
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