Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04360 and BPUM_2638

See Amino acid alignment / Visit BSNT_04360 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_04360___ytzH.1.24716.seq
#    -bsequence dna-align/BPUM_2638___ytzH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04360___ytzH-BPUM_2638___ytzH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04360___ytzH-BPUM_2638___ytzH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04360___ytzH
# 2: BPUM_2638___ytzH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     189/288 (65.6%)
# Similarity:   189/288 (65.6%)
# Gaps:          21/288 ( 7.3%)
# Score: 528.0
# 
#
#=======================================

BSNT_04360___      1 ATGGGTTTACATTATGAGCATCAAGTTCATTTATTGAAGGATATATTGAC     50
                     |||||.|||.|...|.|.|||||..||||.|||.|.||.|||||.||.||
BPUM_2638___y      1 ATGGGATTAAACCGTCAACATCAGCTTCAATTAATCAAAGATATTTTAAC     50

BSNT_04360___     51 TGACCATCAATTGGACTGCTGCGGAACAGTCGCAGAGTACGAGCAGCTTG    100
                     .||.||.||.|||||.||||||||.||.||.|||||.||.||.|||.|.|
BPUM_2638___y     51 CGATCACCAGTTGGATTGCTGCGGGACTGTTGCAGAATATGAACAGGTGG    100

BSNT_04360___    101 AGCGTGTGATTAAATCACTGATGGCAAACACCGAGCTTGATTC--AAATT    148
                     ..||.||||||.|||.|.||.|||||||....||.||||||.|  |.|||
BPUM_2638___y    101 GACGCGTGATTCAATTAATGCTGGCAAAAGAAGACCTTGATGCCGACATT    150

BSNT_04360___    149 --TCAAAAACGTGCTTGA-AGATGTTTACCGCTACAGCCAATCAGGAATA    195
                       ||||     |..||.| ||||.||||....|||||||||...||.|..
BPUM_2638___y    151 CGTCAA-----TTATTAACAGATATTTATGATTACAGCCAAAAGGGTACT    195

BSNT_04360___    196 TC-GTCCAAATCCATCGACTCACACATACAAGAGCATCAGAACAGC--CT    242
                     || |||| |.||.||.||..||||.||..|.|.|||||  ||..||  .|
BPUM_2638___y    196 TCTGTCC-ATTCAATTGATGCACATATTGAGGCGCATC--AATCGCATTT    242

BSNT_04360___    243 GTCTCAATGGGTAGAGCAAATGGATTCGTATTCCTGA-    279
                     |||..|.|||||.|||  |||  ||||.|.|..||.| 
BPUM_2638___y    243 GTCAGAGTGGGTCGAG--AAT--ATTCCTCTGTCTTAA    276


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