Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04353 and BPUM_2635
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_04353___malS.1.24716.seq
# -bsequence dna-align/BPUM_2635___malS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04353___malS-BPUM_2635___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-BPUM_2635___malS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: BPUM_2635___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1744
# Identity: 1236/1744 (70.9%)
# Similarity: 1236/1744 (70.9%)
# Gaps: 89/1744 ( 5.1%)
# Score: 4174.5
#
#
#=======================================
BSNT_04353___ 1 GTGAAACAAT-TCAAAGT-AACAAACGAAGGAGA---CATTCAAACAACA 45
|||||.|||| |.|..|| .|| |.||||| ||||.|||||.|.
BPUM_2635___m 1 GTGAACCAATCTTATCGTGTAC-----ATGGAGATGTCATTGAAACACCG 45
BSNT_04353___ 46 TTAAGAGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTGC 95
||||||||..|.|||||..|.||.||.||||.|||.||||||||.|||||
BPUM_2635___m 46 TTAAGAGGGATGGAAGTCATGTCCGTCCCTTATTTAAACAAAGGGGTTGC 95
BSNT_04353___ 96 TTTTACTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCGC 145
.|||||..|||||||..|..||||.|||||||||||.||.|||.|.||||
BPUM_2635___m 96 ATTTACGAAGGAAGAGCGGGAAGAGCTTGGTTTAAAGGGGTTTTTACCGC 145
BSNT_04353___ 146 CCAAGGTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATAT 195
|.|||||.||||||.|.||.|||||||||||..|.||.|||||.|| .|
BPUM_2635___m 146 CTAAGGTTTTAACATTAGAAGATCAGGCGAAGCGTGCCTATGAGCA--GT 193
BSNT_04353___ 196 TC--CGCACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCTG 243
|| .||||||||.||.||..|..|.||||||||.||||||||..|.||.
BPUM_2635___m 194 TCAAGGCACAGCCGGATGAACTCGGAAAAAATGTGTATTTAACATCACTT 243
BSNT_04353___ 244 CACGATCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAGG 293
||.||..|.||.|||..|||.||||||....|..|||||||.||.||||.
BPUM_2635___m 244 CATGACAGAAACGAAGTGCTTTTTTACAAATTACTAAATGAGCACTTAGC 293
BSNT_04353___ 294 GGAAATGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAGA 343
.||.|||||.||||||||||||||||||||.||.|||||.||.||.|||.
BPUM_2635___m 294 AGAGATGCTGCCGATTGTCTACACACCGACGGTTGGAACAGCCATTCAGC 343
BSNT_04353___ 344 GATACAGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGAT 393
|.||.||||||||.||..||||.|||.||||.||.|||.|.|||||.|||
BPUM_2635___m 344 GTTATAGCCATGAGTATCGAAAGCCAAGAGGCCTTTATTTATCAATTGAT 393
BSNT_04353___ 394 GACCCGGACGGTATGAAAGAAGCATTT-----AAACAGTATAAAGATCAA 438
||...|||.||.|||.||||...|||| |.||.||.| .|||
BPUM_2635___m 394 GATTTGGAAGGCATGGAAGAGATATTTGCCTCATACGGTGT--GGAT--- 438
BSNT_04353___ 439 AGCGATACGATCGATTTAATTGTTGCAACTGATGCGGAAGGAATTTTAGG 488
||..|.||.||.|||||.|||||.||.|||||.|||||.||||||||
BPUM_2635___m 439 ---GAATCCATTGACTTAATCGTTGCGACAGATGCAGAAGGTATTTTAGG 485
BSNT_04353___ 489 GATCGGTGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAAGCTGG 538
.||.||.||||||||.||.||.||.||.||.|||||..|.||.||.||.|
BPUM_2635___m 486 TATTGGAGACTGGGGAGTTGGCGGTATTGCCATTTCAGTCGGGAAACTTG 535
BSNT_04353___ 539 CGGTTTATACAGCGGCTGCGGGCATTGATCCGAGCAGAGTGCTGGCTGTT 588
|.|||||||||||.||.||.|||||||||||.|||.|.||||||||||||
BPUM_2635___m 536 CAGTTTATACAGCCGCAGCAGGCATTGATCCTAGCCGCGTGCTGGCTGTT 585
BSNT_04353___ 589 GTTTTAGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCGCTTTA 638
||..|||||||.|||||.||||||||.||.||||||||.|||||||||||
BPUM_2635___m 586 GTACTAGATGCCGGGACGAATCAGGAAAGTCTCTTGAATGATCCGCTTTA 635
BSNT_04353___ 639 TGTCGGCAACCAGCATTCTAGAGTGCGCGGAGAACGCTATGACCAATTTA 688
|||.||.||.||||||||..|.||.|||||.||.||.|||||.||.||.|
BPUM_2635___m 636 TGTTGGAAATCAGCATTCCCGCGTTCGCGGTGAGCGGTATGATCAGTTCA 685
BSNT_04353___ 689 TTGACGACTACGTTGCGCTGGCGAGAGAAACATTTCCGAATGCATTGCTG 738
|.||..|.||.||||.|||.||..|.|.|||.|||||.||||||.|.||.
BPUM_2635___m 686 TCGATCAATATGTTGAGCTTGCCCGCGCAACCTTTCCAAATGCACTTCTT 735
BSNT_04353___ 739 CATTGGGAGGATTTCGGGGCGAAAAACGCTCGAAGCATTTTGAAACGCTA 788
||.|||||.||.||.|||.|.|||||.||.|||..|||.|||.||...||
BPUM_2635___m 736 CACTGGGAAGACTTTGGGACAAAAAATGCACGAGCCATATTGGAAAAATA 785
BSNT_04353___ 789 TAAAGATAAAGTGTGTACCTTCAATGATGATATCCAAGGAACTGGCGCTG 838
|||.||..||.|.|||||.||.||||||||.||.|||||.|||||.||||
BPUM_2635___m 786 TAAGGAACAAATTTGTACATTTAATGATGACATTCAAGGGACTGGAGCTG 835
BSNT_04353___ 839 TTTCTTTGGCCGCAGTCTTATCCTGTGCAAAAGCGTCTAAAGTTCCATTG 888
|.||..|.||.||.||..|..|.|||||||||||.||.||.|||||..||
BPUM_2635___m 836 TGTCACTTGCTGCGGTTCTGGCATGTGCAAAAGCTTCGAAGGTTCCGCTG 885
BSNT_04353___ 889 AGGGATCACAGAGTTGTTATATTCGGAGCGGGAACGGCAGGAATCGGAAT 938
|..||||||.||.|.||.||.||.||||||||.|||||||||||.||.||
BPUM_2635___m 886 AAAGATCACCGAATCGTCATTTTTGGAGCGGGTACGGCAGGAATTGGCAT 935
BSNT_04353___ 939 TGCCGAACAGCTGCGGGAAGC-ATTGGTGCGCGAGGGACTGAGT----GA 983
.||.||.|||.|.||.||.|| || ||..|||||..|||| ||
BPUM_2635___m 936 AGCGGAGCAGATCCGTGATGCGAT-----CGTCAGGGATGGAGTCAAAGA 980
BSNT_04353___ 984 AGAAGAATCATACAAGCGCTTCTGGTGCATAGACAGAAAC-GGGCTGTTA 1032
|||.||||||||....||.||||||||.||.||.| |||| ||..||.|.
BPUM_2635___m 981 AGAGGAATCATATGGTCGTTTCTGGTGTATTGATA-AAACAGGATTGCTT 1029
BSNT_04353___ 1033 ACAGATGAT---------ATGGATCAGCTTCTTGATTTCCAAAAGCCGTA 1073
||||||||| || ||||| .|||| ||||||||.||
BPUM_2635___m 1030 ACAGATGATTCACCTGACAT---TCAGC-----CATTT-CAAAAGCCATA 1070
BSNT_04353___ 1074 TGC---TCGTTCGGCTGATGAAGTAAAGGATTATCAGCGGAACGGAGACG 1120
||| .|||| ||||.|||||||||||||||...||.||.| |
BPUM_2635___m 1071 TGCAAGACGTT---CTGACGAAGTAAAGGATTATGCCCGCAATG-----G 1112
BSNT_04353___ 1121 GCGGAGG-----CATTGATCTTCTT-GAAGTGGTCCGGCAGGCAAAACCG 1164
.|..|.| ||||||| ||.|| ||.||.|||...|||||||||||.
BPUM_2635___m 1113 CCCTAAGCATTCCATTGAT-TTATTAGAGGTCGTCAAACAGGCAAAACCA 1161
BSNT_04353___ 1165 ACGATCCTGATCGGCACATCTACGGTTTCCGGCGCTTTCACTGAAGAAAT 1214
||.|||.|.||.|||||.||.||.||....||.||.||.||.||.|||||
BPUM_2635___m 1162 ACCATCTTAATTGGCACTTCGACAGTAGGAGGAGCATTTACAGAGGAAAT 1211
BSNT_04353___ 1215 TGTAAAAGAAATGGCGTCACATGTGAAACGGCCCGCGATTTTGCCAATGT 1264
|||.|||||||||||||||||.||..|.||.||.||.|||||.|||||||
BPUM_2635___m 1212 TGTGAAAGAAATGGCGTCACACGTAGAGCGCCCAGCCATTTTACCAATGT 1261
BSNT_04353___ 1265 CAAATCCGACAACTCTTTCTGAAGCAAAGCCGGAGGATTTAATCGAATGG 1314
|.|||||||||.|||||||.|||||||||||..|.|||.|.||.||.|||
BPUM_2635___m 1262 CTAATCCGACACCTCTTTCAGAAGCAAAGCCTAAAGATCTCATTGAGTGG 1311
BSNT_04353___ 1315 ACAGAAGGCCGTGCGCTGATCACGACAGGAAGCCCGTTCCCGCCAGTTGA 1364
||||||||.||.||.||..|.||.|||||||||||.||....||.||.||
BPUM_2635___m 1312 ACAGAAGGACGCGCCCTTGTGACAACAGGAAGCCCATTTGATCCTGTCGA 1361
BSNT_04353___ 1365 ATATAACGGAGTTACGTATCATATCGGGCAGGCAAACAACGCGCTTGTCT 1414
||||..|||.||.||.|||.|.||.|||||.||.||.||.||.|||||.|
BPUM_2635___m 1362 ATATGGCGGCGTCACATATGAAATTGGGCAAGCGAATAATGCTCTTGTGT 1411
BSNT_04353___ 1415 TCCCTGGTCTCGGTCTTGGAACGATTGTTACCAAATCAAAATTAATTACC 1464
||||.||.||.||.||||||||||||||..|.|||.||....|.||..|.
BPUM_2635___m 1412 TCCCAGGGCTTGGCCTTGGAACGATTGTGTCTAAAGCACGCCTCATGTCA 1461
BSNT_04353___ 1465 GACGGCATGTTTGAAGCATGTGCCCGGGCAATCGCAGGTATGGTCAATGT 1514
|||.|||||||||..||..||||....||.||.||..|.|||||||||||
BPUM_2635___m 1462 GACAGCATGTTTGTTGCGAGTGCTGAAGCGATTGCCAGCATGGTCAATGT 1511
BSNT_04353___ 1515 CGGGGTGCCTGGCGCGCCGATGCTTCCGAAAGTTGA--AGATTTGCGCAC 1562
|||....||.||.||..|.|||||.||.|..||.|| ||.|| ||.||
BPUM_2635___m 1512 CGGAAAACCGGGTGCAGCAATGCTGCCAAGTGTGGATCAGCTT--CGAAC 1559
BSNT_04353___ 1563 TGTTTCGGCAACCGTTGCGGT---TGAAGTCGCAAAAACCG--CGATGAA 1607
.|||||.||.||.||.||.|| ||.|| |||||..|.|| .||||||
BPUM_2635___m 1560 CGTTTCAGCGACAGTGGCTGTCCGTGTAG-CGCAAGCAGCGATTGATGAA 1608
BSNT_04353___ 1608 GGAAGGCGTTGCTACGGAAGAGCCAGAAGACATTATACAGGCAGTGCAGG 1657
|||| ||||...||||...||.||.||..|.||.|||||.||.||||
BPUM_2635___m 1609 GGAA----TTGCAGAGGAAACACCTGAGGATCTCATTCAGGCTGTACAGG 1654
BSNT_04353___ 1658 ATGCGATGTGGTATCCGGTATACAAACCGATTCGCGCGATATAA 1701
|.||.||||||.||||.||.||||||...||....||.||||||
BPUM_2635___m 1655 ACGCTATGTGGCATCCTGTGTACAAAAAAATCAAAGCCATATAA 1698
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