Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04353 and BPUM_2635

See Amino acid alignment / Visit BSNT_04353 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_04353___malS.1.24716.seq
#    -bsequence dna-align/BPUM_2635___malS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04353___malS-BPUM_2635___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-BPUM_2635___malS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: BPUM_2635___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1744
# Identity:    1236/1744 (70.9%)
# Similarity:  1236/1744 (70.9%)
# Gaps:          89/1744 ( 5.1%)
# Score: 4174.5
# 
#
#=======================================

BSNT_04353___      1 GTGAAACAAT-TCAAAGT-AACAAACGAAGGAGA---CATTCAAACAACA     45
                     |||||.|||| |.|..|| .||     |.|||||   ||||.|||||.|.
BPUM_2635___m      1 GTGAACCAATCTTATCGTGTAC-----ATGGAGATGTCATTGAAACACCG     45

BSNT_04353___     46 TTAAGAGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTGC     95
                     ||||||||..|.|||||..|.||.||.||||.|||.||||||||.|||||
BPUM_2635___m     46 TTAAGAGGGATGGAAGTCATGTCCGTCCCTTATTTAAACAAAGGGGTTGC     95

BSNT_04353___     96 TTTTACTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCGC    145
                     .|||||..|||||||..|..||||.|||||||||||.||.|||.|.||||
BPUM_2635___m     96 ATTTACGAAGGAAGAGCGGGAAGAGCTTGGTTTAAAGGGGTTTTTACCGC    145

BSNT_04353___    146 CCAAGGTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATAT    195
                     |.|||||.||||||.|.||.|||||||||||..|.||.|||||.||  .|
BPUM_2635___m    146 CTAAGGTTTTAACATTAGAAGATCAGGCGAAGCGTGCCTATGAGCA--GT    193

BSNT_04353___    196 TC--CGCACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCTG    243
                     ||  .||||||||.||.||..|..|.||||||||.||||||||..|.||.
BPUM_2635___m    194 TCAAGGCACAGCCGGATGAACTCGGAAAAAATGTGTATTTAACATCACTT    243

BSNT_04353___    244 CACGATCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAGG    293
                     ||.||..|.||.|||..|||.||||||....|..|||||||.||.||||.
BPUM_2635___m    244 CATGACAGAAACGAAGTGCTTTTTTACAAATTACTAAATGAGCACTTAGC    293

BSNT_04353___    294 GGAAATGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAGA    343
                     .||.|||||.||||||||||||||||||||.||.|||||.||.||.|||.
BPUM_2635___m    294 AGAGATGCTGCCGATTGTCTACACACCGACGGTTGGAACAGCCATTCAGC    343

BSNT_04353___    344 GATACAGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGAT    393
                     |.||.||||||||.||..||||.|||.||||.||.|||.|.|||||.|||
BPUM_2635___m    344 GTTATAGCCATGAGTATCGAAAGCCAAGAGGCCTTTATTTATCAATTGAT    393

BSNT_04353___    394 GACCCGGACGGTATGAAAGAAGCATTT-----AAACAGTATAAAGATCAA    438
                     ||...|||.||.|||.||||...||||     |.||.||.|  .|||   
BPUM_2635___m    394 GATTTGGAAGGCATGGAAGAGATATTTGCCTCATACGGTGT--GGAT---    438

BSNT_04353___    439 AGCGATACGATCGATTTAATTGTTGCAACTGATGCGGAAGGAATTTTAGG    488
                        ||..|.||.||.|||||.|||||.||.|||||.|||||.||||||||
BPUM_2635___m    439 ---GAATCCATTGACTTAATCGTTGCGACAGATGCAGAAGGTATTTTAGG    485

BSNT_04353___    489 GATCGGTGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAAGCTGG    538
                     .||.||.||||||||.||.||.||.||.||.|||||..|.||.||.||.|
BPUM_2635___m    486 TATTGGAGACTGGGGAGTTGGCGGTATTGCCATTTCAGTCGGGAAACTTG    535

BSNT_04353___    539 CGGTTTATACAGCGGCTGCGGGCATTGATCCGAGCAGAGTGCTGGCTGTT    588
                     |.|||||||||||.||.||.|||||||||||.|||.|.||||||||||||
BPUM_2635___m    536 CAGTTTATACAGCCGCAGCAGGCATTGATCCTAGCCGCGTGCTGGCTGTT    585

BSNT_04353___    589 GTTTTAGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCGCTTTA    638
                     ||..|||||||.|||||.||||||||.||.||||||||.|||||||||||
BPUM_2635___m    586 GTACTAGATGCCGGGACGAATCAGGAAAGTCTCTTGAATGATCCGCTTTA    635

BSNT_04353___    639 TGTCGGCAACCAGCATTCTAGAGTGCGCGGAGAACGCTATGACCAATTTA    688
                     |||.||.||.||||||||..|.||.|||||.||.||.|||||.||.||.|
BPUM_2635___m    636 TGTTGGAAATCAGCATTCCCGCGTTCGCGGTGAGCGGTATGATCAGTTCA    685

BSNT_04353___    689 TTGACGACTACGTTGCGCTGGCGAGAGAAACATTTCCGAATGCATTGCTG    738
                     |.||..|.||.||||.|||.||..|.|.|||.|||||.||||||.|.||.
BPUM_2635___m    686 TCGATCAATATGTTGAGCTTGCCCGCGCAACCTTTCCAAATGCACTTCTT    735

BSNT_04353___    739 CATTGGGAGGATTTCGGGGCGAAAAACGCTCGAAGCATTTTGAAACGCTA    788
                     ||.|||||.||.||.|||.|.|||||.||.|||..|||.|||.||...||
BPUM_2635___m    736 CACTGGGAAGACTTTGGGACAAAAAATGCACGAGCCATATTGGAAAAATA    785

BSNT_04353___    789 TAAAGATAAAGTGTGTACCTTCAATGATGATATCCAAGGAACTGGCGCTG    838
                     |||.||..||.|.|||||.||.||||||||.||.|||||.|||||.||||
BPUM_2635___m    786 TAAGGAACAAATTTGTACATTTAATGATGACATTCAAGGGACTGGAGCTG    835

BSNT_04353___    839 TTTCTTTGGCCGCAGTCTTATCCTGTGCAAAAGCGTCTAAAGTTCCATTG    888
                     |.||..|.||.||.||..|..|.|||||||||||.||.||.|||||..||
BPUM_2635___m    836 TGTCACTTGCTGCGGTTCTGGCATGTGCAAAAGCTTCGAAGGTTCCGCTG    885

BSNT_04353___    889 AGGGATCACAGAGTTGTTATATTCGGAGCGGGAACGGCAGGAATCGGAAT    938
                     |..||||||.||.|.||.||.||.||||||||.|||||||||||.||.||
BPUM_2635___m    886 AAAGATCACCGAATCGTCATTTTTGGAGCGGGTACGGCAGGAATTGGCAT    935

BSNT_04353___    939 TGCCGAACAGCTGCGGGAAGC-ATTGGTGCGCGAGGGACTGAGT----GA    983
                     .||.||.|||.|.||.||.|| ||     ||..|||||..||||    ||
BPUM_2635___m    936 AGCGGAGCAGATCCGTGATGCGAT-----CGTCAGGGATGGAGTCAAAGA    980

BSNT_04353___    984 AGAAGAATCATACAAGCGCTTCTGGTGCATAGACAGAAAC-GGGCTGTTA   1032
                     |||.||||||||....||.||||||||.||.||.| |||| ||..||.|.
BPUM_2635___m    981 AGAGGAATCATATGGTCGTTTCTGGTGTATTGATA-AAACAGGATTGCTT   1029

BSNT_04353___   1033 ACAGATGAT---------ATGGATCAGCTTCTTGATTTCCAAAAGCCGTA   1073
                     |||||||||         ||   |||||     .|||| ||||||||.||
BPUM_2635___m   1030 ACAGATGATTCACCTGACAT---TCAGC-----CATTT-CAAAAGCCATA   1070

BSNT_04353___   1074 TGC---TCGTTCGGCTGATGAAGTAAAGGATTATCAGCGGAACGGAGACG   1120
                     |||   .||||   ||||.|||||||||||||||...||.||.|     |
BPUM_2635___m   1071 TGCAAGACGTT---CTGACGAAGTAAAGGATTATGCCCGCAATG-----G   1112

BSNT_04353___   1121 GCGGAGG-----CATTGATCTTCTT-GAAGTGGTCCGGCAGGCAAAACCG   1164
                     .|..|.|     ||||||| ||.|| ||.||.|||...|||||||||||.
BPUM_2635___m   1113 CCCTAAGCATTCCATTGAT-TTATTAGAGGTCGTCAAACAGGCAAAACCA   1161

BSNT_04353___   1165 ACGATCCTGATCGGCACATCTACGGTTTCCGGCGCTTTCACTGAAGAAAT   1214
                     ||.|||.|.||.|||||.||.||.||....||.||.||.||.||.|||||
BPUM_2635___m   1162 ACCATCTTAATTGGCACTTCGACAGTAGGAGGAGCATTTACAGAGGAAAT   1211

BSNT_04353___   1215 TGTAAAAGAAATGGCGTCACATGTGAAACGGCCCGCGATTTTGCCAATGT   1264
                     |||.|||||||||||||||||.||..|.||.||.||.|||||.|||||||
BPUM_2635___m   1212 TGTGAAAGAAATGGCGTCACACGTAGAGCGCCCAGCCATTTTACCAATGT   1261

BSNT_04353___   1265 CAAATCCGACAACTCTTTCTGAAGCAAAGCCGGAGGATTTAATCGAATGG   1314
                     |.|||||||||.|||||||.|||||||||||..|.|||.|.||.||.|||
BPUM_2635___m   1262 CTAATCCGACACCTCTTTCAGAAGCAAAGCCTAAAGATCTCATTGAGTGG   1311

BSNT_04353___   1315 ACAGAAGGCCGTGCGCTGATCACGACAGGAAGCCCGTTCCCGCCAGTTGA   1364
                     ||||||||.||.||.||..|.||.|||||||||||.||....||.||.||
BPUM_2635___m   1312 ACAGAAGGACGCGCCCTTGTGACAACAGGAAGCCCATTTGATCCTGTCGA   1361

BSNT_04353___   1365 ATATAACGGAGTTACGTATCATATCGGGCAGGCAAACAACGCGCTTGTCT   1414
                     ||||..|||.||.||.|||.|.||.|||||.||.||.||.||.|||||.|
BPUM_2635___m   1362 ATATGGCGGCGTCACATATGAAATTGGGCAAGCGAATAATGCTCTTGTGT   1411

BSNT_04353___   1415 TCCCTGGTCTCGGTCTTGGAACGATTGTTACCAAATCAAAATTAATTACC   1464
                     ||||.||.||.||.||||||||||||||..|.|||.||....|.||..|.
BPUM_2635___m   1412 TCCCAGGGCTTGGCCTTGGAACGATTGTGTCTAAAGCACGCCTCATGTCA   1461

BSNT_04353___   1465 GACGGCATGTTTGAAGCATGTGCCCGGGCAATCGCAGGTATGGTCAATGT   1514
                     |||.|||||||||..||..||||....||.||.||..|.|||||||||||
BPUM_2635___m   1462 GACAGCATGTTTGTTGCGAGTGCTGAAGCGATTGCCAGCATGGTCAATGT   1511

BSNT_04353___   1515 CGGGGTGCCTGGCGCGCCGATGCTTCCGAAAGTTGA--AGATTTGCGCAC   1562
                     |||....||.||.||..|.|||||.||.|..||.||  ||.||  ||.||
BPUM_2635___m   1512 CGGAAAACCGGGTGCAGCAATGCTGCCAAGTGTGGATCAGCTT--CGAAC   1559

BSNT_04353___   1563 TGTTTCGGCAACCGTTGCGGT---TGAAGTCGCAAAAACCG--CGATGAA   1607
                     .|||||.||.||.||.||.||   ||.|| |||||..|.||  .||||||
BPUM_2635___m   1560 CGTTTCAGCGACAGTGGCTGTCCGTGTAG-CGCAAGCAGCGATTGATGAA   1608

BSNT_04353___   1608 GGAAGGCGTTGCTACGGAAGAGCCAGAAGACATTATACAGGCAGTGCAGG   1657
                     ||||    ||||...||||...||.||.||..|.||.|||||.||.||||
BPUM_2635___m   1609 GGAA----TTGCAGAGGAAACACCTGAGGATCTCATTCAGGCTGTACAGG   1654

BSNT_04353___   1658 ATGCGATGTGGTATCCGGTATACAAACCGATTCGCGCGATATAA   1701
                     |.||.||||||.||||.||.||||||...||....||.||||||
BPUM_2635___m   1655 ACGCTATGTGGCATCCTGTGTACAAAAAAATCAAAGCCATATAA   1698


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