Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04350 and BPUM_2633
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_04350___ytoP.1.24716.seq
# -bsequence dna-align/BPUM_2633___ytoP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04350___ytoP-BPUM_2633___ytoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04350___ytoP-BPUM_2633___ytoP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04350___ytoP
# 2: BPUM_2633___ytoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 761/1142 (66.6%)
# Similarity: 761/1142 (66.6%)
# Gaps: 136/1142 (11.9%)
# Score: 2415.0
#
#
#=======================================
BSNT_04350___ 1 ATGAATCAAGAAACGAAAG-CGCTTTTCCAAACACTGACGCAGCTTCCCG 49
||||||.||||||| |..| |||||||||.||...|.||..|..|.|..|
BPUM_2633___y 1 ATGAATGAAGAAAC-ATTGTCGCTTTTCCGAAATTTAACAGAATTACAAG 49
BSNT_04350___ 50 GCGCGCCGGGCAATGAGCATCAGGTTCGTGCTTTTATGAAGCAGGAGCTA 99
||||.||.||.||||||||.||.||.||||||||||||||..||||.||.
BPUM_2633___y 50 GCGCCCCAGGTAATGAGCACCATGTGCGTGCTTTTATGAAAAAGGAACTT 99
BSNT_04350___ 100 GCCAAATATGCCGATGACATCGTTCAGGACAGACTGGGAAGTGTTTTCGG 149
|..||||||.|.||.||..||.|||||||..|.||.||..||||.||.||
BPUM_2633___y 100 GAAAAATATTCTGACGAACTCATTCAGGATCGTCTTGGCGGTGTGTTTGG 149
BSNT_04350___ 150 AGTCAGACG--AGGCG--CAGAGGACGCACCGAGAATTATGGTAGCCGGG 195
.|| ||| ||| | ||||..|.|||||.|.|||.|||||.||.||.
BPUM_2633___y 150 GGT---ACGCAAGG-GACCAGAAAATGCACCTAAAATCATGGTGGCTGGT 195
BSNT_04350___ 196 CACATGGACGAAGTCGGCTTCATGGTGACATCCATTACAGACAACGGGCT 245
||.|||||.|||||.|||||||||||..||||||||||..|.|||||..|
BPUM_2633___y 196 CATATGGATGAAGTGGGCTTCATGGTTTCATCCATTACGAAGAACGGAAT 245
BSNT_04350___ 246 GCTCAGATTCCAGACGCTCGGAGGCTGGTGGAGCCAGGTTTTGCTTGCGC 295
|.|..|.|||||.||.||.||.|.|||||||||.||.||..||||.||.|
BPUM_2633___y 246 GATACGCTTCCAAACACTAGGCGCCTGGTGGAGTCAAGTCATGCTGGCAC 295
BSNT_04350___ 296 AGCGGGTTGAAATTCAAACAGATAACGGGCCGGTTCCGGGTGTGATTTCA 345
||||.||.||..||||.||.|||.|||||||..||||.|||||..|.||.
BPUM_2633___y 296 AGCGTGTCGACGTTCATACCGATCACGGGCCAATTCCTGGTGTCGTCTCT 345
BSNT_04350___ 346 AGCATACCGCCGCATTTATTGACAGATGC------------GCA-----G 378
||.|.|||.||.|||.|..|.||| | ||| |
BPUM_2633___y 346 AGTACACCTCCTCATCTTCTAACA----CCAGAACAAAAAAGCAAATCTG 391
BSNT_04350___ 379 CGAAACCGTCCGATGGATATCAAGAACATGATGATCGACATTGGAGCGGA 428
.||||||.||.| |||||.|.||.||.|||||.||.||
BPUM_2633___y 392 TGAAACCATCAG-------------ACATGCTCATTGATATTGGTGCAGA 428
BSNT_04350___ 429 TGATAAGGAAGACGCCATCAAAA----TCGGCATTAAACCGGGACAGCAG 474
...|.|.|||||.| ||||| |.||||||...||.||||||||.
BPUM_2633___y 429 CAGTGAAGAAGAGG----CAAAAGAACTTGGCATTCGTCCCGGACAGCAA 474
BSNT_04350___ 475 ATCGTGCCTGTTTGTCC------GTTTACGACGATGGCGAATGAAAAGAA 518
|||||||||| | ||||||..|||||||||||...|||||
BPUM_2633___y 475 ATCGTGCCTG------CAACAGTGTTTACCCCGATGGCGAATCCTAAGAA 518
BSNT_04350___ 519 AATTTTATCAAAAGCATGGGATAACAGATATGGATGCGG-CTTAAGC-AT 566
.||||||.|.||.||.|||||||||.|.|||||.||||| ||| || ||
BPUM_2633___y 519 GATTTTAGCGAAGGCTTGGGATAACCGCTATGGCTGCGGACTT--GCGAT 566
BSNT_04350___ 567 TGAACTTCTGAAGGAATTACACGGTAAAGAGCTTCCGAA-----TACA-- 609
||||.|..|.||.|||.|| ||||| |||| |.||
BPUM_2633___y 567 TGAATTATTAAAAGAAATA------AAAGA-----CGAACCACTTTCATG 605
BSNT_04350___ 610 ----CTCTATGCGGGTGCAACGGTTCAGGAAGAAGTAGGGCTAAG-GGGC 654
||.|||.|.|||||||||||||||||||||||||||||.|| |||
BPUM_2633___y 606 TCATCTGTATTCAGGTGCAACGGTTCAGGAAGAAGTAGGGCTTAGAGGG- 654
BSNT_04350___ 655 GCGCAGACG--GCTTCTCATATGATTAAACCGGACTTGTTTTTCGCCCTT 702
|||||.| |||.|..||||||||.|.|||||..||||.||.||..|.
BPUM_2633___y 655 --GCAGAAGTAGCTGCGAATATGATTCAGCCGGATCTGTTCTTTGCTTTA 702
BSNT_04350___ 703 GACGCCAGCCCGGCAAACGATATGAGCGGAGACAAAAATGAATTCGGCCA 752
||.||.||.||.|||||||||.|||..||.|||||||...||||.|||||
BPUM_2633___y 703 GATGCAAGTCCTGCAAACGATGTGACAGGTGACAAAACCCAATTTGGCCA 752
BSNT_04350___ 753 GCTTGGAAAAGG----CTTTTTGCTGCGCATTCTTGACAGAACGACAGTC 798
|||||||||||| ||| |||||.|||.||||..||||.|...|.
BPUM_2633___y 753 GCTTGGAAAAGGTGCACTT----CTGCGAATTTTTGATCGAACCATGATT 798
BSNT_04350___ 799 ATGCATCGCGGAATGAGGGAATTCGTTCTTGATATGGCTG----AAACGC 844
|.|||.|||||.|||||.||.||.||.||.||||.||||| ||||
BPUM_2633___y 799 ACGCACCGCGGGATGAGAGACTTTGTGCTCGATACGGCTGAGTCAAAC-- 846
BSNT_04350___ 845 ATGA-TATTCCATATCAATATTTTGTATCCGGCGGGGGAACAGACGCAGG 893
| |||||||||.||||||||.|||||....||.||.||.||.||.||
BPUM_2633___y 847 ---AGTATTCCATACCAATATTTCGTATCACCAGGTGGTACGGATGCTGG 893
BSNT_04350___ 894 CAAG-GTTCATATTTCGAACAGCGGTGTGCCGTCAGCGGTTATCGGAATA 942
|.| |||||||||||.|||...||.|||||.||.||.||.||.|||.|.
BPUM_2633___y 894 -ACGTGTTCATATTTCAAACCAAGGCGTGCCTTCTGCTGTCATTGGAGTG 942
BSNT_04350___ 943 TGTTCCCGCTATATTCATACAAACGCTTCTATCATTCA-TATT------- 984
||..|.|||||.|||||.|||| .||||||| ||||
BPUM_2633___y 943 TGCGCTCGCTACATTCACACAA--------GTCATTCAGTATTGCATGTG 984
BSNT_04350___ 985 GATGATTATGCTGCTGCTAAAGAAATGCTCATCAAACTTGTAACAGCCTG 1034
|||||.||.||.||.||.||||||.|..|..||...|||||.|.|..|||
BPUM_2633___y 985 GATGACTACGCAGCGGCAAAAGAATTAATTGTCCGTCTTGTGAAAAACTG 1034
BSNT_04350___ 1035 CGAT--AAGCAGACGGTGGATGCGATTAAAGAAAATATGTAG 1074
.||| ||| .||.||||||.|.|||.|..||.|..||||.
BPUM_2633___y 1035 TGATCAAAG--TACAGTGGATTCTATTTATCAACAGGTGTAA 1074
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