Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04350 and BPUM_2633

See Amino acid alignment / Visit BSNT_04350 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_04350___ytoP.1.24716.seq
#    -bsequence dna-align/BPUM_2633___ytoP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04350___ytoP-BPUM_2633___ytoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04350___ytoP-BPUM_2633___ytoP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04350___ytoP
# 2: BPUM_2633___ytoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity:     761/1142 (66.6%)
# Similarity:   761/1142 (66.6%)
# Gaps:         136/1142 (11.9%)
# Score: 2415.0
# 
#
#=======================================

BSNT_04350___      1 ATGAATCAAGAAACGAAAG-CGCTTTTCCAAACACTGACGCAGCTTCCCG     49
                     ||||||.||||||| |..| |||||||||.||...|.||..|..|.|..|
BPUM_2633___y      1 ATGAATGAAGAAAC-ATTGTCGCTTTTCCGAAATTTAACAGAATTACAAG     49

BSNT_04350___     50 GCGCGCCGGGCAATGAGCATCAGGTTCGTGCTTTTATGAAGCAGGAGCTA     99
                     ||||.||.||.||||||||.||.||.||||||||||||||..||||.||.
BPUM_2633___y     50 GCGCCCCAGGTAATGAGCACCATGTGCGTGCTTTTATGAAAAAGGAACTT     99

BSNT_04350___    100 GCCAAATATGCCGATGACATCGTTCAGGACAGACTGGGAAGTGTTTTCGG    149
                     |..||||||.|.||.||..||.|||||||..|.||.||..||||.||.||
BPUM_2633___y    100 GAAAAATATTCTGACGAACTCATTCAGGATCGTCTTGGCGGTGTGTTTGG    149

BSNT_04350___    150 AGTCAGACG--AGGCG--CAGAGGACGCACCGAGAATTATGGTAGCCGGG    195
                     .||   |||  ||| |  ||||..|.|||||.|.|||.|||||.||.||.
BPUM_2633___y    150 GGT---ACGCAAGG-GACCAGAAAATGCACCTAAAATCATGGTGGCTGGT    195

BSNT_04350___    196 CACATGGACGAAGTCGGCTTCATGGTGACATCCATTACAGACAACGGGCT    245
                     ||.|||||.|||||.|||||||||||..||||||||||..|.|||||..|
BPUM_2633___y    196 CATATGGATGAAGTGGGCTTCATGGTTTCATCCATTACGAAGAACGGAAT    245

BSNT_04350___    246 GCTCAGATTCCAGACGCTCGGAGGCTGGTGGAGCCAGGTTTTGCTTGCGC    295
                     |.|..|.|||||.||.||.||.|.|||||||||.||.||..||||.||.|
BPUM_2633___y    246 GATACGCTTCCAAACACTAGGCGCCTGGTGGAGTCAAGTCATGCTGGCAC    295

BSNT_04350___    296 AGCGGGTTGAAATTCAAACAGATAACGGGCCGGTTCCGGGTGTGATTTCA    345
                     ||||.||.||..||||.||.|||.|||||||..||||.|||||..|.||.
BPUM_2633___y    296 AGCGTGTCGACGTTCATACCGATCACGGGCCAATTCCTGGTGTCGTCTCT    345

BSNT_04350___    346 AGCATACCGCCGCATTTATTGACAGATGC------------GCA-----G    378
                     ||.|.|||.||.|||.|..|.|||    |            |||     |
BPUM_2633___y    346 AGTACACCTCCTCATCTTCTAACA----CCAGAACAAAAAAGCAAATCTG    391

BSNT_04350___    379 CGAAACCGTCCGATGGATATCAAGAACATGATGATCGACATTGGAGCGGA    428
                     .||||||.||.|             |||||.|.||.||.|||||.||.||
BPUM_2633___y    392 TGAAACCATCAG-------------ACATGCTCATTGATATTGGTGCAGA    428

BSNT_04350___    429 TGATAAGGAAGACGCCATCAAAA----TCGGCATTAAACCGGGACAGCAG    474
                     ...|.|.|||||.|    |||||    |.||||||...||.||||||||.
BPUM_2633___y    429 CAGTGAAGAAGAGG----CAAAAGAACTTGGCATTCGTCCCGGACAGCAA    474

BSNT_04350___    475 ATCGTGCCTGTTTGTCC------GTTTACGACGATGGCGAATGAAAAGAA    518
                     ||||||||||      |      ||||||..|||||||||||...|||||
BPUM_2633___y    475 ATCGTGCCTG------CAACAGTGTTTACCCCGATGGCGAATCCTAAGAA    518

BSNT_04350___    519 AATTTTATCAAAAGCATGGGATAACAGATATGGATGCGG-CTTAAGC-AT    566
                     .||||||.|.||.||.|||||||||.|.|||||.||||| |||  || ||
BPUM_2633___y    519 GATTTTAGCGAAGGCTTGGGATAACCGCTATGGCTGCGGACTT--GCGAT    566

BSNT_04350___    567 TGAACTTCTGAAGGAATTACACGGTAAAGAGCTTCCGAA-----TACA--    609
                     ||||.|..|.||.|||.||      |||||     ||||     |.||  
BPUM_2633___y    567 TGAATTATTAAAAGAAATA------AAAGA-----CGAACCACTTTCATG    605

BSNT_04350___    610 ----CTCTATGCGGGTGCAACGGTTCAGGAAGAAGTAGGGCTAAG-GGGC    654
                         ||.|||.|.|||||||||||||||||||||||||||||.|| ||| 
BPUM_2633___y    606 TCATCTGTATTCAGGTGCAACGGTTCAGGAAGAAGTAGGGCTTAGAGGG-    654

BSNT_04350___    655 GCGCAGACG--GCTTCTCATATGATTAAACCGGACTTGTTTTTCGCCCTT    702
                       |||||.|  |||.|..||||||||.|.|||||..||||.||.||..|.
BPUM_2633___y    655 --GCAGAAGTAGCTGCGAATATGATTCAGCCGGATCTGTTCTTTGCTTTA    702

BSNT_04350___    703 GACGCCAGCCCGGCAAACGATATGAGCGGAGACAAAAATGAATTCGGCCA    752
                     ||.||.||.||.|||||||||.|||..||.|||||||...||||.|||||
BPUM_2633___y    703 GATGCAAGTCCTGCAAACGATGTGACAGGTGACAAAACCCAATTTGGCCA    752

BSNT_04350___    753 GCTTGGAAAAGG----CTTTTTGCTGCGCATTCTTGACAGAACGACAGTC    798
                     ||||||||||||    |||    |||||.|||.||||..||||.|...|.
BPUM_2633___y    753 GCTTGGAAAAGGTGCACTT----CTGCGAATTTTTGATCGAACCATGATT    798

BSNT_04350___    799 ATGCATCGCGGAATGAGGGAATTCGTTCTTGATATGGCTG----AAACGC    844
                     |.|||.|||||.|||||.||.||.||.||.||||.|||||    ||||  
BPUM_2633___y    799 ACGCACCGCGGGATGAGAGACTTTGTGCTCGATACGGCTGAGTCAAAC--    846

BSNT_04350___    845 ATGA-TATTCCATATCAATATTTTGTATCCGGCGGGGGAACAGACGCAGG    893
                        | |||||||||.||||||||.|||||....||.||.||.||.||.||
BPUM_2633___y    847 ---AGTATTCCATACCAATATTTCGTATCACCAGGTGGTACGGATGCTGG    893

BSNT_04350___    894 CAAG-GTTCATATTTCGAACAGCGGTGTGCCGTCAGCGGTTATCGGAATA    942
                      |.| |||||||||||.|||...||.|||||.||.||.||.||.|||.|.
BPUM_2633___y    894 -ACGTGTTCATATTTCAAACCAAGGCGTGCCTTCTGCTGTCATTGGAGTG    942

BSNT_04350___    943 TGTTCCCGCTATATTCATACAAACGCTTCTATCATTCA-TATT-------    984
                     ||..|.|||||.|||||.||||        .||||||| ||||       
BPUM_2633___y    943 TGCGCTCGCTACATTCACACAA--------GTCATTCAGTATTGCATGTG    984

BSNT_04350___    985 GATGATTATGCTGCTGCTAAAGAAATGCTCATCAAACTTGTAACAGCCTG   1034
                     |||||.||.||.||.||.||||||.|..|..||...|||||.|.|..|||
BPUM_2633___y    985 GATGACTACGCAGCGGCAAAAGAATTAATTGTCCGTCTTGTGAAAAACTG   1034

BSNT_04350___   1035 CGAT--AAGCAGACGGTGGATGCGATTAAAGAAAATATGTAG   1074
                     .|||  |||  .||.||||||.|.|||.|..||.|..||||.
BPUM_2633___y   1035 TGATCAAAG--TACAGTGGATTCTATTTATCAACAGGTGTAA   1074


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