Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04340 and BPUM_2626
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_04340___murC.1.24716.seq
# -bsequence dna-align/BPUM_2626___murC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04340___murC-BPUM_2626___murC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04340___murC-BPUM_2626___murC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04340___murC
# 2: BPUM_2626___murC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1321
# Identity: 1003/1321 (75.9%)
# Similarity: 1003/1321 (75.9%)
# Gaps: 44/1321 ( 3.3%)
# Score: 3707.0
#
#
#=======================================
BSNT_04340___ 1 ATGACTGTTTATCATTTTGTTGGAATAAAAGGGACCGGTATGAGTCCGCT 50
|||||||||||||||||||||||||||||||||||.|||||||||||.||
BPUM_2626___m 1 ATGACTGTTTATCATTTTGTTGGAATAAAAGGGACAGGTATGAGTCCACT 50
BSNT_04340___ 51 TGCCCAAATACTTCATGATAATGGATATACTGTCCAAGGATCGGATATCG 100
.||||||||.||||||||||.|||.|||||||||||||||||||||||||
BPUM_2626___m 51 GGCCCAAATTCTTCATGATACTGGGTATACTGTCCAAGGATCGGATATCG 100
BSNT_04340___ 101 AAAAATTTATTTTTACGCAAACAGCGCTTGAAAAAAGAAATATTACGATT 150
|||||..|||.|||||.||||.|||..|.|||.||.|||||||||..|||
BPUM_2626___m 101 AAAAACATATCTTTACACAAAAAGCATTAGAAGAACGAAATATTAAAATT 150
BSNT_04340___ 151 CTTCCTTTTAGCGCGGAAAATATTAAACCCGGCATGACAGTCATCGCCGG 200
|||||.|||..|.|.||.||||||.|.||.||.|||||.|||||.||.||
BPUM_2626___m 151 CTTCCATTTGACCCAGATAATATTCAGCCAGGGATGACCGTCATTGCAGG 200
BSNT_04340___ 201 AAACGCATTCCCAGACACGCATCCTGAAATAGAAAAAGCGATGTCTGAGG 250
.||.|||||.||.||.||.||.|||||.||.|||...||..|.|||||.|
BPUM_2626___m 201 TAATGCATTTCCTGATACACACCCTGAGATTGAACGTGCCCTTTCTGAAG 250
BSNT_04340___ 251 GAATTCCGGTGATACGTTATCATAAGTTTTTAGGCGACTACATGAAAAAA 300
|.|||||.||.||.|||||.|||||.||..|.||.||.||||||.|...|
BPUM_2626___m 251 GGATTCCTGTCATTCGTTACCATAAATTCCTTGGAGAATACATGGATTCA 300
BSNT_04340___ 301 TTCACGAGTGTTGCCGTTACGGGCGCACACGGCAAAACGTCGACTACGGG 350
|||||.|..|||||..||||.||.||.||.||.||||||||.||.||.||
BPUM_2626___m 301 TTCACAAACGTTGCGATTACTGGTGCTCATGGTAAAACGTCAACAACAGG 350
BSNT_04340___ 351 TCTGCTGGCTCACGTGATCCAAAACGCAAAACCGACGTCTTTCTTAATCG 400
.|||||.||.||.|||||.|||...||.|||||.||.||.|.||||||||
BPUM_2626___m 351 ACTGCTTGCCCATGTGATGCAATCAGCGAAACCAACTTCATACTTAATCG 400
BSNT_04340___ 401 GAGACGGAACAGGCCAGGGAAATGAAAACAGCGAATACTTTGTGTTTGAA 450
|.||.|||.|.||...|||.||.|||||||||||.||.|||||.||||||
BPUM_2626___m 401 GCGATGGATCTGGTATGGGGAAAGAAAACAGCGAGTATTTTGTATTTGAA 450
BSNT_04340___ 451 GCGTGCGAATACCGCCGCCATTTCTTAAGCTATCAGCCAGATTATGCGAT 500
||.||||||||||||.|.||.|||.|.||||||||.|||||.||||||||
BPUM_2626___m 451 GCATGCGAATACCGCAGACACTTCCTCAGCTATCATCCAGACTATGCGAT 500
BSNT_04340___ 501 TATGACGAATATTGATTTTGATCATCCTGATTACTTCTCAAGCATTGACG 550
.|||||.||||||||||||||||||||||||||.||||||..||||||||
BPUM_2626___m 501 CATGACCAATATTGATTTTGATCATCCTGATTATTTCTCAGACATTGACG 550
BSNT_04340___ 551 ATGTATTTGACGCTTTCCAAGAGATGGCTCTTCAGGTCAACAAAGGCATT 600
|.||.|||||.||.||.|||.|.|||||.|||||.||.||.||||.||||
BPUM_2626___m 551 ACGTGTTTGATGCGTTTCAAAACATGGCACTTCAAGTAAAAAAAGCCATT 600
BSNT_04340___ 601 ATTGCCTGCGGAGACGATGAGCATCTGCCGAAAATCCATGCGAACGTCCC 650
||.||.|||||.||.||||||||||||||.||.||.||.|||||.||.||
BPUM_2626___m 601 ATCGCTTGCGGTGATGATGAGCATCTGCCTAAGATTCAAGCGAAGGTACC 650
BSNT_04340___ 651 GGTTGTGTATTACGG---CACGGGGGAAGAAAATGATTTTCAAGCCAGAA 697
.||||||||.||||| || ..||||||||||||||.|||||..|.|
BPUM_2626___m 651 TGTTGTGTACTACGGTTTCA---ATGAAGAAAATGATTTCCAAGCACGTA 697
BSNT_04340___ 698 ACATCGTAAAAAGCACGGAAGGGACAACTTTTGATGTCTTTGTCCGCAAT 747
|..|.||.||.|.|||||||||.||.||.||||||||.|||||..|.|||
BPUM_2626___m 698 ATGTTGTGAAGAACACGGAAGGCACTACATTTGATGTATTTGTAAGAAAT 747
BSNT_04340___ 748 ACGTTCTATGATACGTTTTATATTCCTGCGTACGGCCACCACAATGTATT 797
|||||.||||||||.||.|||||||||||.||.||..|.||.|||||..|
BPUM_2626___m 748 ACGTTTTATGATACCTTCTATATTCCTGCCTATGGAAATCATAATGTCCT 797
BSNT_04340___ 798 AAACTCATTGGCGGTCATTGCGTTATGCCATTATGAAGAAATTGAT-TCC 846
.||.|||||.||.||||||||.|||||.|||||||||...|||||| |..
BPUM_2626___m 798 TAATTCATTAGCTGTCATTGCATTATGTCATTATGAATCCATTGATGTAG 847
BSNT_04340___ 847 AGCATCATTAA----GCATGCTCTCAAATCCTTTGGGGGCGTCAAACGCA 892
||| ||||.|| || |||..|.| |.|||||.||.||.||||||.
BPUM_2626___m 848 AGC-TCATCAAAGGGGC--GCTAACGA--CATTTGGTGGTGTGAAACGCC 892
BSNT_04340___ 893 GATTCAATG-AGAAGCAGCTTGGGGATCAAGTGCTGATCGATGACTATGC 941
|.||||||| |.|||.|| |.||.|..||.||..|.||.||.||||||||
BPUM_2626___m 893 GCTTCAATGAAAAAGTAG-TCGGTGCGCAGGTTTTAATTGACGACTATGC 941
BSNT_04340___ 942 CCATCATCCGACAGAAATAAAAGTGACAATCGAGGCGGCAAGACAGAAGT 991
||||||.||.||.||.||..||||.|||||.||.||.|||.|.||.||||
BPUM_2626___m 942 CCATCACCCAACGGAGATTGAAGTCACAATTGAAGCAGCACGCCAAAAGT 991
BSNT_04340___ 992 ATCCTGATCGGGAAATTGTCGCGGTATTCCAGCCTCATACATTTACACGG 1041
||||.||.||.||.||||||||.||.||||||||.|||||.||.|||||.
BPUM_2626___m 992 ATCCAGACCGTGAGATTGTCGCTGTTTTCCAGCCGCATACCTTCACACGT 1041
BSNT_04340___ 1042 ACGCAGCAGTTCCTTGA-CGAATTTGCAGAAAGCCTG-----AGCGGCGC 1085
||.|||||.|| |||.| .||||||||.||.||.||| ||||
BPUM_2626___m 1042 ACACAGCAATT-CTTAAGTGAATTTGCTGACAGTCTGAAAAAAGCG---- 1086
BSNT_04340___ 1086 TGACTGTGTGTATTTATGCGATATTTTCGGCTCAGCCCGTGAGAA---TG 1132
||||.|||.||..||||||||||||||||.|||||||||||.|| ||
BPUM_2626___m 1087 -GACTATGTATACCTATGCGATATTTTCGGTTCAGCCCGTGAAAACATTG 1135
BSNT_04340___ 1133 CCGGAAAGCTGACGATCGGCGATCTCCAGGGA-AAAATTCATAATGCCAA 1181
||||| ||||..||||..|||.|.| |.|| |||||.|...|.|||.|
BPUM_2626___m 1136 --GGAAA-CTGAGCATCGAAGATTTAC-GTGAGAAAATCCCGCAGGCCCA 1181
BSNT_04340___ 1182 GCTGATTGAAGAAGATGACACATCTGTTTTAAAAGCTCATGATAAAGCCG 1231
..||||||.||||||.||.||||||||..|.|||||.| |.||||..|
BPUM_2626___m 1182 ATTGATTGCAGAAGAAGATACATCTGTGCTGAAAGCGC---ACAAAGATG 1228
BSNT_04340___ 1232 ---TTCTCATCTTCATGGGAGCAGGAGATATCCAAAAATATATGAGAGCC 1278
||||.|||||.||||||||||||||.||.|||||||||.||.||||.
BPUM_2626___m 1229 GAATTCTGATCTTTATGGGAGCAGGAGACATTCAAAAATATTTGCGAGCT 1278
BSNT_04340___ 1279 TACGAAAACGTCATGGCATAA 1299
||.|||||.|||...|.||||
BPUM_2626___m 1279 TATGAAAAAGTCGCTGTATAA 1299
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