Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04333 and BPUM_2623
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04333___ytxJ.1.24716.seq
# -bsequence dna-align/BPUM_2623___ytxJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04333___ytxJ-BPUM_2623___ytxJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04333___ytxJ-BPUM_2623___ytxJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04333___ytxJ
# 2: BPUM_2623___ytxJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 358
# Identity: 223/358 (62.3%)
# Similarity: 223/358 (62.3%)
# Gaps: 65/358 (18.2%)
# Score: 661.5
#
#
#=======================================
BSNT_04333___ 1 ATGGCTAAACAGCTTATTCAATCTGAGGAAGAATTT-------AAACGGA 43
|||.|.|||||.||.|||.||.|.||.|||.|.||| .||||.|
BPUM_2623___y 1 ATGTCAAAACAACTCATTGAAACAGAAGAACAGTTTGATCAACTAACGAA 50
BSNT_04333___ 44 TTGCAGAACAGGAAGGCGCTTTCGTCTTCTTTAAACACAGCACCACATGC 93
| ||.||.||..|.||.|||||.|||||.|||||....|||||.
BPUM_2623___y 51 T-------CAAGATGGGACCTTTGTCTTTTTTAAGCACAGTTTGACATGT 93
BSNT_04333___ 94 CCGATCAGCCAGGCAGCATTTCATGAGTTTGATGCCTTTGCAAATCAG-- 141
||||||||.||.||.||.|||||.||||||||.||.||||| .||.|
BPUM_2623___y 94 CCGATCAGTCAAGCGGCTTTTCAAGAGTTTGAAGCATTTGC--GTCTGCA 141
BSNT_04333___ 142 CATGAGGATGTGCCGGCTTACTATCTT--------CAAGTACAAGA-AGC 182
|||||.||.|||||..|||| |.|||| .||..|||||| |||
BPUM_2623___y 142 CATGAAGACGTGCCAACTTA-TTTCTTGCAGATTCAAAACACAAGAGAGC 190
BSNT_04333___ 183 CCGGCCGCTGTCTAATTTCAT------TG-CAGAAACATATGGGGTCAAG 225
|||||| || ||||||..|..|||||.|||
BPUM_2623___y 191 ---------------TTTCATCCTATGTGACAGAAAAGTCGGGGGTAAAG 225
BSNT_04333___ 226 CATGAAAGCCCTCAGATATTCATCATCCAGAACGGTG---AAGTGAAATG 272
||.|||||.||||||..|.|..||.| .|.||||| ||||.|||||
BPUM_2623___y 226 CACGAAAGTCCTCAGGCACTTGTCTT---TAGCGGTGGAAAAGTAAAATG 272
BSNT_04333___ 273 GCATACCTCACATTCACAAATTAC---AGAAGCCGCTATTGAGCAGCATT 319
||||.|.||.||.|||...||||| ||||| ||| ||||.||..||.
BPUM_2623___y 273 GCATGCATCTCACTCAAGCATTACAAGAGAAG-CGC--TTGAACATAATG 319
BSNT_04333___ 320 TGTCATAG 327
|||.|
BPUM_2623___y 320 TGTAA--- 324
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