Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04327 and BPUM_2619
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04327___acuC.1.24716.seq
# -bsequence dna-align/BPUM_2619___acuC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04327___acuC-BPUM_2619___acuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04327___acuC-BPUM_2619___acuC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04327___acuC
# 2: BPUM_2619___acuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 830/1224 (67.8%)
# Similarity: 830/1224 (67.8%)
# Gaps: 96/1224 ( 7.8%)
# Score: 2724.0
#
#
#=======================================
BSNT_04327___ 1 ATGGCCGTCAGAGCAAAGGGATCTGCTATG-----AGAGACAGTGTATTT 45
||| ||.||| .|||
BPUM_2619___a 1 ---------------------------ATGAAGGAAGCGAC-----CTTT 18
BSNT_04327___ 46 ATCTATTCTCCATCCTACCAAACCTATATGTTTCATCAGGAGCATCCCTT 95
.|.|.|||.||.||.|..|||||.||...||||||.||.||.||||||||
BPUM_2619___a 19 GTTTTTTCACCCTCTTTTCAAACGTACCAGTTTCACCAAGACCATCCCTT 68
BSNT_04327___ 96 TAATCAGCAGCGGGTTCTGTTAACATATGATTTGCTTAAGACGATCAATG 145
.|||||||..||.|||...|||||||||||.||.|||.|.|..||.||.|
BPUM_2619___a 69 CAATCAGCTTCGTGTTTACTTAACATATGACTTACTTCAAAAAATGAAGG 118
BSNT_04327___ 146 CCTT---TGATGATGGAGACATTGTCACCCCCAGACT-----CGCTTCAG 187
|.|| .|||||| ||.||.|||.|.||..|..| |.|||
BPUM_2619___a 119 CATTAACAGATGAT---GAGATCGTCGCACCGCGTATGGCGACCCTT--- 162
BSNT_04327___ 188 AAGAGGAGCTTTCCCTTGTCCACACGGACGATTACATTCAGGCCGTAAAG 237
|||||..|....||.||.||.||.|.||||||.|||||.||.||..|
BPUM_2619___a 163 --GAGGAATTAAAGCTCGTTCATACAGCCGATTATATTCAAGCTGTGCA- 209
BSNT_04327___ 238 CTTGCGGGC----GCCGGAAAGCTTCCCGCTGAAGAAGGAGAAAGCTACG 283
|||||| |..||||||||..|..|.|.|||.||.||..||||||
BPUM_2619___a 210 ---GCGGGCTAGTGAAGGAAAGCTCTCTACAGCAGAGGGGGAGCGCTACG 256
BSNT_04327___ 284 GGCTCGGCACTGAAGACACACCCGTCTTTGCCGGCATGCACGAAGCGGCA 333
|.||.|||||.||.||.|||||..|.|||||.||.|||||.||.||.||.
BPUM_2619___a 257 GTCTTGGCACCGAGGATACACCGATGTTTGCAGGTATGCATGAGGCAGCT 306
BSNT_04327___ 334 TCACTCTTGGTCGGCGGCACTTTAACGGCCGCAGACTGGGTCATGTCAGG 383
||.|||.|.||.||.||.||..|.||.||||..|||...||||||...||
BPUM_2619___a 307 TCTCTCCTTGTTGGAGGGACACTCACAGCCGTTGACCAAGTCATGATGGG 356
BSNT_04327___ 384 ACAAGCCCTGCATGCGGCAAACCTTGGCGGAGGGCTTCATCACGGCTTTC 433
|||..|.|.||||||....||.||||||||.||.|||||||||||.|||.
BPUM_2619___a 357 ACACTCGCAGCATGCACTGAATCTTGGCGGTGGACTTCATCACGGGTTTA 406
BSNT_04327___ 434 GTGGGAGAGCTTCAGGGTTTTGCATATATAATGACAGCGCTGTGGCGATT 483
..|||.|.||.||.||.||.||.||.||||||||||||.|.|||||||||
BPUM_2619___a 407 AAGGGCGTGCATCCGGCTTCTGTATTTATAATGACAGCTCAGTGGCGATT 456
BSNT_04327___ 484 CAATATATCCAGAAAAAATACAGATCCAGGGTACTTTATATTGATACCGA 533
||||||||.||.||||.||||.|..|.||..|..|.|||||||||||.||
BPUM_2619___a 457 CAATATATTCAAAAAACATACGGCGCAAGAATTTTATATATTGATACGGA 506
BSNT_04327___ 534 CGCCCACCACGGGGACGGTGTGCAATTTACCTTTTACGATAATCCTGACG 583
.|||||.|||||.||.|||||.|||||.|.||||||.||..|.|||||.|
BPUM_2619___a 507 TGCCCATCACGGAGATGGTGTACAATTCAGCTTTTATGACGACCCTGAGG 556
BSNT_04327___ 584 TATGCACGCTGTCCATTCATGAAACAGGAAGGTATTTATTCCCTGGAACC 633
|.||.|||.|.||..||||||||||.|||.|.|||||.|||||||||||.
BPUM_2619___a 557 TTTGTACGGTCTCACTTCATGAAACGGGACGCTATTTGTTCCCTGGAACT 606
BSNT_04327___ 634 GGTCAGATCCAAGAAAAAGG-CAGCGGAAAAGGATATGGCTATTCCTTTA 682
||.||..|.||.||||.||| || ||..|||||.||||||||..|||..|
BPUM_2619___a 607 GGACAAGTACAGGAAAGAGGTCA-CGATAAAGGCTATGGCTACGCCTACA 655
BSNT_04327___ 683 ATATCCCGCTTGACGCTTTTACAGAGGATGATTCTTTTCTTGAGGCTTAC 732
|.||.||.|||||.||.||||||||.|||||.||.||.|||||.||.|||
BPUM_2619___a 656 ACATTCCACTTGATGCATTTACAGAAGATGAATCGTTCCTTGAAGCATAC 705
BSNT_04327___ 733 CGGACAGCAGCTTCAGAAGTCGCCGCTTATTTCAAGCCCGATGTCATTAT 782
||.|||||||...|.|||.|.||.||||.|||.||.||.|||||.|||.|
BPUM_2619___a 706 CGAACAGCAGTGACTGAAATTGCTGCTTTTTTTAAACCAGATGTGATTTT 755
BSNT_04327___ 783 CAGCCAAAACGGCGCCGATGCCCATTACTACGACCCGCTGACGCATTTAT 832
.|..|||||.||.||.|||||.||.|||||.||.|||.|.||.|||||||
BPUM_2619___a 756 GACGCAAAATGGTGCAGATGCACACTACTATGATCCGTTAACTCATTTAT 805
BSNT_04327___ 833 CAGCAACAATCAATATATACGAAGAAATCCCCCGTCTTGCACACACTTTG 882
|.||.||.||.||.|||||.||.|||||.||..|.||.||.||....||.
BPUM_2619___a 806 CTGCCACCATGAAAATATATGAGGAAATTCCTAGACTAGCCCATGAGTTA 855
BSNT_04327___ 883 GCTCATCAATATTGCGGAGGGAAATGGATTGCAGTCGGAGGCGGCGGATA 932
||.|||||||||||.|..||.||||||||.||.|||||.||.||.|||||
BPUM_2619___a 856 GCGCATCAATATTGTGATGGCAAATGGATCGCTGTCGGCGGAGGAGGATA 905
BSNT_04327___ 933 TGATATTTGGCGCGTCGTGCCCCGCGCCTGGGCCAGAATATGGCTTGAAA 982
.|||||||||||.||.|||||..|.||.|||..|||.||.||||||||||
BPUM_2619___a 906 CGATATTTGGCGGGTTGTGCCAAGGGCGTGGAGCAGGATTTGGCTTGAAA 955
BSNT_04327___ 983 TGAAGGGAATTGACCCGGGACAC--------GAGATCCCGCCGGAATGGA 1024
||||.||.|| ||||| ||..|.||.|.|||.|||.
BPUM_2619___a 956 TGAAAGGCAT--------GACACCGCCTGATGAACTGCCTCAGGACTGGG 997
BSNT_04327___ 1025 TT---GCTAAATGGCAAAAACAATGCCCCGTGGCCCTTCCGTCGAGCTGG 1071
|| ||| |||||.|||||||..||.||..||||.||.|..|..|||
BPUM_2619___a 998 TTCAAGCT---TGGCATAAACAATCGCCTGTCACCCTGCCATTCACATGG 1044
BSNT_04327___ 1072 AGCGATCCGGCTGATTTATATCCTCCGATTCCCCGCAAGCCTGAAATTAC 1121
.|.|||||.|..|||||||||||.|||||.||..|.||..|.|||||.||
BPUM_2619___a 1045 GGAGATCCTGACGATTTATATCCACCGATCCCAAGAAAAGCAGAAATCAC 1094
BSNT_04327___ 1122 AGAAAAAAATGCCCAAACTGTCAG-CAAAGCATTATATGCGATACGTTCT 1170
||||||||||||.|||||||| || .||||||.| .|||| .|||| .
BPUM_2619___a 1095 AGAAAAAAATGCTCAAACTGT-AGAAAAAGCACT-GATGC---CCGTT-A 1138
BSNT_04327___ 1171 GAACAGCAAAGAACAAAG---TAA 1191
||..||.|||||| |||| |||
BPUM_2619___a 1139 GACGAGAAAAGAA-AAAGGCATAA 1161
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