Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04326 and BPUM_2618
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04326___acuB.1.24716.seq
# -bsequence dna-align/BPUM_2618___acuB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04326___acuB-BPUM_2618___acuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04326___acuB-BPUM_2618___acuB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04326___acuB
# 2: BPUM_2618___acuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 424/699 (60.7%)
# Similarity: 424/699 (60.7%)
# Gaps: 111/699 (15.9%)
# Score: 1161.5
#
#
#=======================================
BSNT_04326___ 1 ATGATTGTTGAGCAAATCATGAAAAGAGATGTCATTACATTAACG-AAGA 49
|||||..||||.|||||.|||.|..|.|||||.||.||..| .|| ||.|
BPUM_2618___a 1 ATGATGATTGAACAAATAATGGAGCGTGATGTGATCACGCT-GCGAAAAA 49
BSNT_04326___ 50 CGGATACGCTTGAAACAGCAATATGCAAACTGAAGGAAT---TCCATATC 96
|.||||||.|||||..|||.|| |||| || ||| |.||.|||
BPUM_2618___a 50 CCGATACGATTGAAGAAGCCAT---CAAA---AA--AATGAGTACACATC 91
BSNT_04326___ 97 A-----GGCATCTGCCTGTTGTAGATGAAGAACGACACGTGATCGGCATG 141
| |||||.|.||..|.|||..|||..||.|....||.||.||.|||
BPUM_2618___a 92 ACATTCGGCATATTCCGATCGTATCTGATCAAGGTTCTGTCATTGGGATG 141
BSNT_04326___ 142 ATTACAGACAGAGACATGAAACAGGCCAGCCCGAGTATTTTTGA---AGA 188
.|.|||||..||||.||.|||.|.|||||.||.|||||.||||| |||
BPUM_2618___a 142 GTGACAGATCGAGATATTAAAAATGCCAGTCCAAGTATATTTGAAACAGA 191
BSNT_04326___ 189 AAACAAAC-------------GAAGCCTATTTCTCACACGAAGCG----- 220
|||.|.|| |..||||.|| ||||.|
BPUM_2618___a 192 AAAAAGACAGCTCTTTATTCAGCGGCCTGTT--------GAAGAGATCAT 233
BSNT_04326___ 221 -----TAGATTCAATTATGAAAAAGGATGTTGTCTGCGTCCACCCGTTAG 265
||||..|||||| |||| .||.|||.|.|
BPUM_2618___a 234 GGTATTAGAGACAATTA----------------CTGC--TCATCCGCTTG 265
BSNT_04326___ 266 ATTTTGTCGAAGAAATATCAGCCGTGTTCTACGAGCATGGCATCGGCTGC 315
||||.||.|||||.||.|||...||.||.|..||.|||||.||.||||||
BPUM_2618___a 266 ATTTCGTTGAAGAGATTTCAAGTGTCTTTTTTGAACATGGAATTGGCTGC 315
BSNT_04326___ 316 CTTCCAGTGGT-ACAC-CATCAAAAATTAATAGGCATTTTAACAAAAACC 363
||||||||||| |.|| |..| |||.|..||||||||.|.|||||.||.
BPUM_2618___a 316 CTTCCAGTGGTGAGACGCGGC--AAACTTGTAGGCATTATCACAAAGACT 363
BSNT_04326___ 364 GATTTGCTGCGGACGTTTGTCAAATTGACAGGCGCTGACCAGCCGGGATC 413
||||||||.||.||||||||||.|.|||||||.||.||.|||||.||.||
BPUM_2618___a 364 GATTTGCTTCGTACGTTTGTCAGACTGACAGGTGCAGATCAGCCTGGGTC 413
BSNT_04326___ 414 GCAAATTGAGATAAAAGTAAACGACATCACCAAAAGCCTCGCTGAGATCA 463
|||..|.|||.|..||||..||.|.||.||..||.|.||.||.||.||||
BPUM_2618___a 414 GCACTTAGAGGTTGAAGTGGACCAAATGACAGAAGGTCTTGCAGACATCA 463
BSNT_04326___ 464 --GCAGTCTTTGCCAAGACCTTCAAGTGAAAATATTAAGCGTGCTTGTTT 511
|| |.|||...|.||.|..||..|..||||..|.||.||||||||.|
BPUM_2618___a 464 CGGC--TATTTTAAAGGAGCAGCATATTCAAATGCTGAGTGTGCTTGTGT 511
BSNT_04326___ 512 ATCCGCATG---ACG-ATCCCGGTGTAAAAGTGCTTGTCTTCCGTGTAAA 557
||||||||| |.| ||| |...|||||.||.||||||||..|..|
BPUM_2618___a 512 ATCCGCATGCAAATGAATC----TTCTAAAGTACTCGTCTTCCGCCTTCA 557
BSNT_04326___ 558 AACGATGAATCCGCTGCCGTTTTTGCAGGCATTACAAAG----------- 596
|||.|||.| |||.|.|..|| |.||.|||
BPUM_2618___a 558 AACCATGCA-----TGCAGATCATG------TGACGAAGCTGATTCGCGC 596
BSNT_04326___ 597 AAATGGACACCACGTCTTATGGCCGTCAGAGCAAAGGGATCTGCTATGA 645
|||.||..|..|.||..|.|||||....|||||.| .|||| ..||||
BPUM_2618___a 597 AAAAGGCTATAAGGTGCTGTGGCCTATGGAGCAGA-CGATC--AAATGA 642
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