Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00480 and BPUM_2613
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00480___lip.1.24716.seq
# -bsequence dna-align/BPUM_2613___lip.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00480___lip-BPUM_2613___lip.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00480___lip-BPUM_2613___lip.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00480___lip
# 2: BPUM_2613___lip
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 674
# Identity: 460/674 (68.2%)
# Similarity: 460/674 (68.2%)
# Gaps: 61/674 ( 9.1%)
# Score: 1448.5
#
#
#=======================================
BSNT_00480___ 1 ATGAA---------ATTTGTAAAAAGAAG------GA---TCGTTGCACT 32
||||| |||..|.|||||.|| || ||||||||.|
BPUM_2613___l 1 ATGAAAGTGTCGTTATTGATGAAAAGGAGTTTACAGATTCTCGTTGCATT 50
BSNT_00480___ 33 TGTAACAATTTTGATGCTGTCTGTTACATCGCTGTTTGCGTTGCAGCCGT 82
|| ||.|..|||| || |||..||.|||.|| .|.||||| |
BPUM_2613___l 51 TG---CATTGGTGAT--TG---GTTCAATGGCTTTT----ATCCAGCC-T 87
BSNT_00480___ 83 CA----GCAAAAGCCGCTGAACACAATCCAGTCGTTATGGTTCACGGTAT 128
.| |..||.||.|||.|.||.||||||||.||.|||||.||.|||||
BPUM_2613___l 88 AAAGAGGTGAAGGCGGCTAAGCATAATCCAGTGGTGATGGTACATGGTAT 137
BSNT_00480___ 129 TGGAGGGGCATCATTCAATTTTGCGGGAATTAAGAGCTATCTCGTATCTC 178
||||||.||.||.|..||.|||||....|||||.||.|||.|.||....|
BPUM_2613___l 138 TGGAGGAGCGTCTTATAACTTTGCTTCGATTAAAAGTTATTTGGTTGGAC 187
BSNT_00480___ 179 AGGGCTGGTCGCGGGACAAGCTGTATGCAGTTGATTTTTGGGACAAGACA 228
|.||||||...||..||.|..|.|.|||..|.|||||....|||||.|||
BPUM_2613___l 188 AAGGCTGGGATCGAAACCAATTATTTGCTATCGATTTCATAGACAAAACA 237
BSNT_00480___ 229 GGCACAAATTATAACAATGGACC-GGTATTATCACGATTTGTGCAAA-AG 276
||.|..||....||||||||.|| .|| |||||..||||.|| |||| |.
BPUM_2613___l 238 GGGAATAACCGCAACAATGGTCCTCGT-TTATCTAGATTCGT-CAAAGAT 285
BSNT_00480___ 277 GTTTTAGATGAAACGGGTGCGAAAAAAGTGGATATTGTCGCTCACAGTAT 326
||..||||..||||||||||.||||||||.||||||||.||.||.|||||
BPUM_2613___l 286 GTGCTAGACAAAACGGGTGCCAAAAAAGTAGATATTGTGGCGCATAGTAT 335
BSNT_00480___ 327 GGGGGGCGCGAACACACTTTACTACATAAAAAATCTGGACGGCGGAAATA 376
|||.||.||||||||.||.|||||.||.||.|||||.||.|||||..|||
BPUM_2613___l 336 GGGCGGGGCGAACACGCTATACTATATTAAGAATCTAGATGGCGGCGATA 385
BSNT_00480___ 377 AAGTTGCAAACGTCGTGACGCTTGGCGGCGCGAAC-----CGTTTGACGA 421
||.|||.|||||||||.||..||||.||.||.||| |||||.|| .
BPUM_2613___l 386 AAATTGAAAACGTCGTCACCATTGGTGGAGCAAACGGACTCGTTTCAC-T 434
BSNT_00480___ 422 CAG-GCAAGGCGCTT-CCGGGAACAGATCCAAATCAAAAGATTTTATACA 469
||| ||| || ||.||||||||||||||||||||.|||.|.||.|
BPUM_2613___l 435 CAGAGCA------TTACCAGGAACAGATCCAAATCAAAAAATTCTCTATA 478
BSNT_00480___ 470 CATCCATTTACAGCAGTGCCGATATGATTGTCATGAATTACTTATCAAGA 519
||||..|.||.|||...||||||.||||||||.|.||...|.|.||..|.
BPUM_2613___l 479 CATCTGTCTATAGCTCAGCCGATTTGATTGTCGTTAACAGCCTTTCGCGT 528
BSNT_00480___ 520 TTAGATGGTGCTAGAAACGTTCAAATCCATGGCGTTGGACACATCGGCCT 569
|||..|||.||.|||||.||.|..|||||.||||||||.||.|||||
BPUM_2613___l 529 TTAATTGGCGCAAGAAATGTCCTGATCCACGGCGTTGGCCATATCGG--- 575
BSNT_00480___ 570 TCTGTACAGC---AGCCAAGTCAACAGCCT-GATTAAAGAAGGGCTGAAC 615
|||.|..|.| ||||||||.|| ||..| .|||||||||||.||||.|
BPUM_2613___l 576 TCTATTAACCTCAAGCCAAGTGAA-AGGGTATATTAAAGAAGGACTGAGC 624
BSNT_00480___ 616 GGCGGGGGCCAGAATACGAATTAA 639
||.||.||.|||||||||||||||
BPUM_2613___l 625 GGTGGAGGACAGAATACGAATTAA 648
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