Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04314 and BPUM_2608
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_04314___yttP.1.24716.seq
# -bsequence dna-align/BPUM_2608___yttP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04314___yttP-BPUM_2608___yttP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04314___yttP-BPUM_2608___yttP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04314___yttP
# 2: BPUM_2608___yttP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 718
# Identity: 437/718 (60.9%)
# Similarity: 437/718 (60.9%)
# Gaps: 146/718 (20.3%)
# Score: 1381.5
#
#
#=======================================
BSNT_04314___ 1 ATGAAAGTA-AGCACCAA------AGACAAA-------ATTATTGAATCT 36
|||||| | |.||.||| |.||||| |||||||||.||
BPUM_2608___y 1 ATGAAA--ACATCAACAACCGTGCAAACAAAAGATCGTATTATTGAAGCT 48
BSNT_04314___ 37 GCTGTCATGCTTTTTAACCAAAAAGGATTTTCTGGCACGTCTGTCCGTGA 86
||..|||..||||||||||||||||||||||||||.||.|||||||||||
BPUM_2608___y 49 GCCATCAGACTTTTTAACCAAAAAGGATTTTCTGGAACCTCTGTCCGTGA 98
BSNT_04314___ 87 AATCGCAAAGTCAGCTGATGTAAATGTTGCGCACATCTCCTACTATTTTA 136
.||.||.|||..|||..|.||.||.|||||.|||||.||.||.||.|||.
BPUM_2608___y 99 GATTGCGAAGGAAGCAAACGTCAACGTTGCCCACATTTCTTATTACTTTC 148
BSNT_04314___ 137 AAGGCAAAGGAGGCTTGATGGA-AAACTTAGTTTCAGAGTTTTACGAGGG 185
||||.||||||||..||.|.|| .||| |.||.||.||.|||||.||.||
BPUM_2608___y 149 AAGGAAAAGGAGGGCTGCTTGAGCAAC-TCGTATCCGAATTTTATGAAGG 197
BSNT_04314___ 186 CTACAGCAAAACGCTTGAAACAGCGGCAAGCAATATCTCTTCTCA---AA 232
|||.|...|.|.|.|||||.|| .||||| |.||.|| ||
BPUM_2608___y 198 CTATATTCACATGATTGAATCA---------CATATC-CATCACATGGAA 237
BSNT_04314___ 233 GCACG-CAGGAACA-----GCTTCTT-CAATTGGTTTTCGATATTTTATC 275
.|.|| ||.|.|.| ||||.|| ||..|||||||.|||||||||||
BPUM_2608___y 238 ACTCGTCATGCAAAAGAATGCTTATTACATGTGGTTTTTGATATTTTATC 287
BSNT_04314___ 276 CTATCAGCATAATCATCGTCAATTAACTCGTTTTGTCTACCGGGAAGTCA 325
.||||||||.||.||.|||||||||||.|||||.||.||.||.||.||.|
BPUM_2608___y 288 TTATCAGCACAAGCACCGTCAATTAACCCGTTTCGTTTATCGAGAGGTGA 337
BSNT_04314___ 326 CAATTGACTCCACATTAATCAGGGAAATTATGTCGACATATCTAATGAAG 375
|.|||||.||.||..|..|.||.||||||||||||||.|||.|||.|||.
BPUM_2608___y 338 CGATTGATTCGACGCTTGTTAGAGAAATTATGTCGACCTATTTAACGAAA 387
BSNT_04314___ 376 GAAAAGTATATCTTCCAGCTGATCATTGAGGAAGGAGAAAAACAGC---G 422
|||||.|||.|.||.|||||.||||||||..||||| ||||.||.| |
BPUM_2608___y 388 GAAAAATATTTGTTTCAGCTCATCATTGAAAAAGGA-AAAAGCACCCATG 436
BSNT_04314___ 423 TGAATATTTAAC-GCTGCCGCTGC--CTCA--TTTTATTCTCCAATTAAA 467
|||.|..|.|.| ||| ||.| |||| ||||||..|.||..|.||
BPUM_2608___y 437 TGATTTGTGAGCAGCT----CTCCATCTCATCTTTTATGATTCAGCTGAA 482
BSNT_04314___ 468 ATCTCTCTTGATGATGCCCTATCTCCAGCCTCAATATATTTCA--GAAGT 515
|||.||..|.||||||||||||.|.|||||.|| ||||||.| ||.||
BPUM_2608___y 483 ATCACTACTCATGATGCCCTATTTACAGCCGCA--ATATTTAATGGAGGT 530
BSNT_04314___ 516 ACTCTACATGCAGCCGCACGAGCCGTATTTTTATAAAATGTATTTTGAAG 565
.||.|||.|..|.||..|.|||||.|||||.|||.|||..||||||.|
BPUM_2608___y 531 GCTTTACTTAAATCCAAATGAGCCTTATTTCTATCAAACATATTTTAA-- 578
BSNT_04314___ 566 AAATCAAGATTTGGATCAGAAGCG---TCTTCCGGACAGGAGACGTGGCG 612
|||.|.||..|| |||||
BPUM_2608___y 579 ------------GGAGCTGAGCCGCTCTCTTC------------------ 598
BSNT_04314___ 613 CTCACCAACTAG-------------------------------------- 624
.|||...|||||
BPUM_2608___y 599 ATCATTTACTAGAACTAAAAAAGCCGGCGTTAGATTCTCATTTAAAACTC 648
BSNT_04314___ 624 ------------------ 624
BPUM_2608___y 649 ATGATGTCTTCGAATTGA 666
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