Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04311 and BPUM_2606
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_04311___ezrA.1.24716.seq
# -bsequence dna-align/BPUM_2606___ezrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04311___ezrA-BPUM_2606___ezrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04311___ezrA-BPUM_2606___ezrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04311___ezrA
# 2: BPUM_2606___ezrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1839
# Identity: 1163/1839 (63.2%)
# Similarity: 1163/1839 (63.2%)
# Gaps: 285/1839 (15.5%)
# Score: 3434.5
#
#
#=======================================
BSNT_04311___ 1 ATGGAGTTTGTCATTGGATTATTAATTGTAC----TGCTTGCGCTGTTTG 46
|||||||||.||||.|| .|||||||| | |||||||..|||||.
BPUM_2606___e 1 ATGGAGTTTATCATCGG---TTTAATTGT-CATTTTGCTTGCTTTGTTTT 46
BSNT_04311___ 47 CGGCAGGCTACTTTTTCAGGAAAAAAATCTACGCCGAAATCGACCGGCTG 96
|.|..||.||.|||.||||.|||||.||.||....||.||.||.||..||
BPUM_2606___e 47 CAGTCGGTTATTTTCTCAGAAAAAATATATATAAAGAGATTGATCGATTG 96
BSNT_04311___ 97 GAATCGTGGAAGATTGAAATTCTGAATCGGTCGATCGTGGAAGAAATGTC 146
|||.|.|||||.|||||||||.|.||..|.||.||.||.||||||||.||
BPUM_2606___e 97 GAAGCATGGAAAATTGAAATTTTAAACAGATCAATTGTAGAAGAAATTTC 146
BSNT_04311___ 147 TAAAATAAAACATTTAAAAATGACGGGTCAGACAGAAGAGTTCTTTGAGA 196
.|||||.|||||.|||||||||||.||..|.|||||..|.||.|||||.|
BPUM_2606___e 147 AAAAATCAAACACTTAAAAATGACCGGAGAAACAGAGCAATTTTTTGAAA 196
BSNT_04311___ 197 AGTGGCGTGAAGAATGGGATGAGATTGTCACAGCCCACATGCCGAAAGTT 246
.||||||||.|||.|||||.||.||.|||||||||||..|.||.||.||.
BPUM_2606___e 197 GGTGGCGTGCAGAGTGGGACGATATCGTCACAGCCCATCTTCCAAAGGTA 246
BSNT_04311___ 247 GAAGAGCTCCTTTATGATGCCGAGGAAAATGCAGACAAATACCGGTT-TA 295
||.|||||..|.|||||.||.||.||..||.|.||.|||||.||.|| |.
BPUM_2606___e 247 GAGGAGCTATTATATGACGCAGAAGAGTATTCTGATAAATATCGATTCTC 296
BSNT_04311___ 296 AAAAGGCCAATCAAGTGCTCGTTCATATCGACGACCTGCTGACAGCGGCT 345
.||| |||||.||.||.||...||||||.||.|||.||||||..||.|||
BPUM_2606___e 297 CAAA-GCCAAGCAGGTTCTAACTCATATTGAGGACTTGCTGAGTGCTGCT 345
BSNT_04311___ 346 GAATCAAGCATTGAAAAGATTCTTCGGGAAAT--CAGCGATCTTGTCACA 393
||.||.|.|||.|||.|.|||.|....||||| || ||.|||||||||
BPUM_2606___e 346 GATTCGAACATCGAAGACATTTTAAAAGAAATTGCA--GACCTTGTCACA 393
BSNT_04311___ 394 AGTGAGG---AAAAGAGCCGTGAA-GAGATTGAACAGGTGAGGGAGCGCT 439
||.|||| ||||..|| || ||.||||||.||||.| .||.||.
BPUM_2606___e 394 AGCGAGGAGCAAAATCGC----AAGGACATTGAAAAGGTCA--AAGAGCA 437
BSNT_04311___ 440 ATTCGAAATC---TCGAAAAAACCTGCTGGCTTACAGCCACCTTTACGGG 486
||.|.||| | |||||||||.|||||.||.||.|||||..|.||.||.
BPUM_2606___e 438 ATACCAAA-CGGTTCGAAAAAATCTGCTTGCGTATAGCCATTTATATGGC 486
BSNT_04311___ 487 GAGCTTTATGACAGCCTTGAAAAGGATCTGGACGAAATTTGGA----GC- 531
...|||||||||| |||.|||.|.|||| ||.|| ||
BPUM_2606___e 487 ACCCTTTATGACA------AAATGGAGCAGGAC-----TTAGATGAGGCC 525
BSNT_04311___ 532 ------GGCATCAAACAATTTGAAGAAGAAACAGAAGGCGGAAACTATAT 575
||.||.||.||.|..||.||||||||||||..|||||||||.||
BPUM_2606___e 526 TGGGAAGGGATTAAGCAGTACGAGGAAGAAACAGAAAACGGAAACTACAT 575
BSNT_04311___ 576 TACTGCACGAAAAGTACTGCTTGAGCAGGACCGCAATCTTGAACGGCTTC 625
.|..|||.||||..||.||||||||||.|||||||..||.||.|.|||||
BPUM_2606___e 576 GAAAGCAAGAAAGATATTGCTTGAGCAAGACCGCAGACTCGACCAGCTTC 625
BSNT_04311___ 626 AGTCATACATAGATGATGTGCCGAAGCTGTTAGCTGACTGTAAACAGACG 675
|...|||.||..|||||||.||.|||||..|.||.|||||.|||||.||.
BPUM_2606___e 626 AACTATATATCAATGATGTACCAAAGCTTATTGCAGACTGCAAACAAACC 675
BSNT_04311___ 676 GTGCCCGGACAGATTGCAAAGCTCAAGGATGGCTATGGCGAAATGAAAGA 725
||.||.||.|||.|..|.|||||.||.||.||.|||...||||||...||
BPUM_2606___e 676 GTACCAGGTCAGCTGACGAAGCTGAAAGACGGATATCAAGAAATGTCGGA 725
BSNT_04311___ 726 AAAAGGGTACAAGCTTGAGCATATCCAGCTTGATAAGGAATTAGAAAATC 775
||||||.||||||||.|||||.||||| |||.|.|| ||.|.|
BPUM_2606___e 726 AAAAGGCTACAAGCTGGAGCACATCCA----GATCACGA-----AAGAGC 766
BSNT_04311___ 776 TG------TCAAAC---CAGCT---GAAACGAGCGGAACATGTCCTGA-T 812
|| |.|||| ||||| || ||||||||.|..|.||.| |
BPUM_2606___e 767 TGGAGACTTTAAACAAACAGCTTGCGA---GAGCGGAAAAATTGCTCATT 813
BSNT_04311___ 813 GACTGAGCTGGATATTGATGAAGCGTC-CGCAATCCTGCAGCTCATTGA- 860
|| |||.||..||.|.||.||.||.|| .|| ||.||||| |.|||
BPUM_2606___e 814 GA-TGAACTCAATTTAGAAGAGGCATCAAGC-ATTCTGCA----AATGAT 857
BSNT_04311___ 861 CGAAAAT---ATTCAATCTGTTTATCAGCAGCTGGAGGGCGAAGTTGAAG 907
|||..|| |||.|..|..|.|||.|.||||||||||..|||||.||.|
BPUM_2606___e 858 CGATGATGCGATTGAGACGCTGTATGATCAGCTGGAGGCGGAAGTAGAGG 907
BSNT_04311___ 908 CCGGTC----AATCCGTACTAAGCAAAATGCCTGA----ATTGATTATTG 949
|.|||| |||| ..|||||.||||||||| |..|| .|
BPUM_2606___e 908 CAGGTCAGGAAATC----AAAAGCAGAATGCCTGAGCTCACAGA----AG 949
BSNT_04311___ 950 CTTACGACAAGCTTAAAGAAGAGAAAGA------GCATACGAAGGCGGAA 993
|.|.|||.|||||| |||.|||| .||.||.|||||.|||
BPUM_2606___e 950 CATTCGAAAAGCTT------GAGCAAGATCACACACAAACAAAGGCAGAA 993
BSNT_04311___ 994 ACTGAGCTGGTGAAGGAAAGCTACAGGCTGACAGCCGGTGAGCTCGGCAA 1043
||.|..||.||.||.||||||||||.|||||||||.||.|||||||...|
BPUM_2606___e 994 ACGGCTCTTGTAAAAGAAAGCTACAAGCTGACAGCAGGAGAGCTCGATCA 1043
BSNT_04311___ 1044 ACAGCAGGCTTTTGAAAAGCGCCTTGATGAAATTGGAAAGCTGCT--ATC 1091
||||.|.||.||.|||||.||..|.||.|||||||.|||||||.| |.|
BPUM_2606___e 1044 ACAGAAAGCCTTCGAAAAACGTTTAGAAGAAATTGAAAAGCTGATGAAAC 1093
BSNT_04311___ 1092 --ATCCGTTAAAGATAAGCTTGATGCAGAGCATGTCGCTTACTCACTTTT 1139
|||||| ||.|||||||||...||.||.||.||.||.|||.|..|
BPUM_2606___e 1094 AAATCCGT----GAGAAGCTTGATCGTGATCACGTGGCATATTCATTACT 1139
BSNT_04311___ 1140 AGTAGAAGAAGTTGCTTCAA-----TAGAGAAGCAAATTGAAGAAGTGAA 1184
|.|.||.|||.|| || |.||||.....||.||||| ||.|
BPUM_2606___e 1140 AATGGATGAAATT-----AATCAGCTGGAGACCTTTATCGAAGA--TGCA 1182
BSNT_04311___ 1185 AAA--AGAGCATGCCGAGTATCGTGAAA----ATCTGCAAGCGCTGAGAA 1228
||| |..|||||.| |...|.||| ||||.|||.|..|.||||
BPUM_2606___e 1183 AAAGCATTGCATGAC----ACATTTAAAGGTCATCTCCAATCATTAAGAA 1228
BSNT_04311___ 1229 AAGAAGAGCTTCAGGCGAGGGAGAC----GCTCAGCAATTTGAAAAAAAC 1274
|||||||..|.||.||||||||.|| |||.||| || |||||
BPUM_2606___e 1229 AAGAAGAATTACAAGCGAGGGAAACACTGGCTGAGC---TT----AAAAC 1271
BSNT_04311___ 1275 AATTTCTGAGACAGCTA------GACTGCTGAAGACTAGCAACATTCCAG 1318
.| |.|| |||||.|| |.|.|||..|.|..|||||.|||||||
BPUM_2606___e 1272 GA-TGCT--GACAGATACAGTACGTCAGCTACATAAAAGCAATATTCCAG 1318
BSNT_04311___ 1319 GGATTCC----GAGCCATATTCAAGAG-ATGCTGGAGAACGCGCA----- 1358
|..|.|| ||| ||..||||| ..||| ||.||.|||||
BPUM_2606___e 1319 GTGTACCTGCTGAG----ATGAAAGAGCGGGCT-GAAAAAGCGCAGGAGA 1363
BSNT_04311___ 1359 ----TCATCATATTCAAGA------------------------------A 1374
||||||..|.||.|| |
BPUM_2606___e 1364 TGATTCATCAAGTGCACGAGCAGCTGGAAAACCTGCCGCTCAACATGCCA 1413
BSNT_04311___ 1375 ACAGTCAATCAACTAAACGAACTTCCATTAAATATGGAAGAAGCCGGAGC 1424
.||||.|||||| |.||||| ||||||||
BPUM_2606___e 1414 GCAGTAAATCAA------------CAATTAA------AAGAAGCC----- 1440
BSNT_04311___ 1425 CCATTTGAAGCAAGCAGAAGAAATCGTCAACAGGGCAAGCCGG--GAATC 1472
|.|||..||..||||| |..|.|| || ||..|
BPUM_2606___e 1441 ---TCTGACACAGTCAGAA-ATGTTGT--------------GGATGAGAC 1472
BSNT_04311___ 1473 AGAGGAA---CTT-GTCGAGCAGGTCATCCTCATTGAAAAAATCATTCAG 1518
|||.||| ||| ||..||..|.||| .||||||..|||||||||.
BPUM_2606___e 1473 AGAAGAAATGCTTAGTAAAGTGGATCA----AATTGAACGAATCATTCAA 1518
BSNT_04311___ 1519 TTCGGAAACCGGTTCAGAAGCCAGAATCATATTTTATCTGAACAGCTGAA 1568
|..||.||.||.||.|||||.||.||.||||||.|.||.|||||..|.||
BPUM_2606___e 1519 TATGGTAATCGCTTTAGAAGTCAAAACCATATTCTTTCAGAACAATTAAA 1568
BSNT_04311___ 1569 AGAAGCGGAAAGACGTTTTTATGCTTTTGATTATGACGACTCTTATGAAA 1618
|||.||||||.||.|.||||||||||.||||||..|||..||.|.|||.|
BPUM_2606___e 1569 AGAGGCGGAACGAAGATTTTATGCTTATGATTACAACGGATCATTTGACA 1618
BSNT_04311___ 1619 TTGCAGCTGCCGCTGTAGAAAAGGCTGCGCCAGGTGCAGTTGAAAAAATC 1668
|.||.||.||.|||||.|||||.||..|.||||||||.|| |.||||.|
BPUM_2606___e 1619 TAGCGGCAGCAGCTGTTGAAAAAGCATCACCAGGTGCTGT--ACAAAAGC 1666
BSNT_04311___ 1669 AA-------AGC-AGACA-----TATCCGC-----TTAG 1689
.| ||| |||.| ||||.|| |.|
BPUM_2606___e 1667 TATTAGCTCAGCAAGAAAAAGAGTATCAGCATCAATAA- 1704
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