Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04309 and BPUM_2605
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_04309___braB.1.24716.seq
# -bsequence dna-align/BPUM_2605___braB2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04309___braB-BPUM_2605___braB2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04309___braB-BPUM_2605___braB2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04309___braB
# 2: BPUM_2605___braB2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1395
# Identity: 971/1395 (69.6%)
# Similarity: 971/1395 (69.6%)
# Gaps: 108/1395 ( 7.7%)
# Score: 3071.5
#
#
#=======================================
BSNT_04309___ 1 ATGAA-ACACTCACTGCCTGTC----AAAGATACCATTATTATTGGTTTC 45
||||| .|| ||| .|||| ||||||||..||||.||.|||||.
BPUM_2605___b 1 ATGAAGGCA---ACT--TTGTCGACGAAAGATACGGTTATCATAGGTTTT 45
BSNT_04309___ 46 ATGCTATTTGCGTTATTCTTTGGAGCAGGAAATATGATCTATCCGCCGGA 95
|||||.|||||..|||||||.||.||.||.||||||||.|||||.||.||
BPUM_2605___b 46 ATGCTGTTTGCTCTATTCTTCGGCGCCGGTAATATGATTTATCCACCAGA 95
BSNT_04309___ 96 ACTTGGACAAGCAGCCGGACACAACGTCTGGAAGGCCATCGGCGGATTTT 145
.|||||.|||...||.||.||.||.||.|||||.||.||.||||||||||
BPUM_2605___b 96 GCTTGGGCAATATGCTGGGCAAAATGTGTGGAAAGCAATGGGCGGATTTT 145
BSNT_04309___ 146 TACTGACAGGGGTAGGCCTGCCGCTTCTCGGCATTATCGCCATCGCATTA 195
||.|.|||||.||.||..|.||.|||||.||.|||||.||.|||||..|.
BPUM_2605___b 146 TATTAACAGGTGTCGGTTTACCTCTTCTAGGGATTATTGCAATCGCTCTG 195
BSNT_04309___ 196 ACCGGTAAGGACGCTAAAGGCCTTGCTGACAAAGCGCACCCTGTTTTCGG 245
||.|||...||.||.|||||..|.|||||.|||||.|||||.|.|||.||
BPUM_2605___b 196 ACTGGTCGAGATGCGAAAGGATTAGCTGATAAAGCTCACCCAGCTTTTGG 245
BSNT_04309___ 246 CACAATCTTTACTGTCGTGCTTTATTTATCAATCGGACCATTATTCGCCA 295
.|||...|||||.|||.|..|.||||||||.||.||.|||.|.|||||.|
BPUM_2605___b 246 AACAGCGTTTACCGTCATTTTATATTTATCTATTGGGCCACTTTTCGCTA 295
BSNT_04309___ 296 TCCCGAGAACAGGAACTGTTTCATATGAAATTGGCGCTGTTCCGTTTTTG 345
|.||..|.||||||||.|||||||||||||||||.||..|.||.|||||.
BPUM_2605___b 296 TTCCTCGTACAGGAACGGTTTCATATGAAATTGGTGCATTACCCTTTTTA 345
BSNT_04309___ 346 ACTGGCGTACCAGAAAGACT-----TTCTTTATTAATATTTACACTTATC 390
.|.||.|||||||...|.|| |||||| ||||.||||||.||
BPUM_2605___b 346 GCAGGTGTACCAGCTTGGCTCTCACTTCTTT-----TATTCACACTTGTC 390
BSNT_04309___ 391 TTTTTCGGCGTTACGTACTATTTAGCGTTAAACCCATCCAAGGTTGTCGA 440
|||||.||..|||||||.|||.|.||..||||.|||.|.|||.||||.||
BPUM_2605___b 391 TTTTTTGGTATTACGTATTATCTTGCTCTAAATCCAACGAAGATTGTAGA 440
BSNT_04309___ 441 TCGAGTCGGAAAAATTCTGACTCCCATCAAATTCACGATTATTTTAATCA 490
.||.||.||||||.|..|.||.||.||.|||||.|||||||||||.||||
BPUM_2605___b 441 CCGTGTAGGAAAAGTGTTAACACCGATTAAATTTACGATTATTTTTATCA 490
BSNT_04309___ 491 TTGTTCTCAAAGCCATCTTCACGCCGATGGGCG-GATTGGGCGC-CGTGA 538
||.||.||||||||||.||.||||||||||||| .||| |||.| |.|||
BPUM_2605___b 491 TTATTGTCAAAGCCATTTTAACGCCGATGGGCGTTATT-GGCACACCTGA 539
BSNT_04309___ 539 CAGAAGCATAT---AAAGGAACACCGGTTTTTAAAGGATTTTTAGAAGGC 585
.|.|.|.||| ||.|||.|| .|||||||||||||||||||.|||
BPUM_2605___b 540 -TGTATCCTATAGCAACGGATCA---TTTTTTAAAGGATTTTTAGAGGGC 585
BSNT_04309___ 586 TATAAAACAATGGACGCACTTGCTTCAATTGTATTTGGCGTTGTCGTTGT 635
||||||||.|||||.||.||||||||.||.||.|||||.|||||.||..|
BPUM_2605___b 586 TATAAAACCATGGATGCTCTTGCTTCTATAGTGTTTGGGGTTGTTGTCAT 635
BSNT_04309___ 636 AAATGC--TGTAAA--AAGCAAAGGCGTTACACAGTCTAAA-GCTCTTGC 680
.||.|| | |||| |.|| ||.||.||| |||..||| ||.||..|
BPUM_2605___b 636 CAACGCCAT-TAAAGGACGC---GGTGTGACA-AGTAAAAAGGCACTGAC 680
BSNT_04309___ 681 TGCAGCCTGCATTAAAGCAGGTGTGATTGCAGCTTTAGGCCTGACTTTCA 730
..|.||.||.||.|||||.|||.||||||||||||..||..|.||.||..
BPUM_2605___b 681 ATCTGCTTGTATCAAAGCGGGTCTGATTGCAGCTTGCGGATTAACATTTG 730
BSNT_04309___ 731 TTTATGTATCCCTTGCTTATTTAGGTGCAACAAGCACAAATGCCATCGGT 780
|||||.||||.||||||||||||||.||..||||.|||.|||||||.|||
BPUM_2605___b 731 TTTATCTATCTCTTGCTTATTTAGGCGCTTCAAGTACACATGCCATTGGT 780
BSNT_04309___ 781 CCTGTTGGTGAAGG-AGCTAAAATTTTATCTGCGTCTTCCCATTATTTAT 829
..||||||.||.|| || ||||||.||..||..||||||.||.|..||||
BPUM_2605___b 781 TTTGTTGGAGATGGTAG-TAAAATCTTGGCTCAGTCTTCTCAATTCTTAT 829
BSNT_04309___ 830 TCGGGTCA--TTGGGCAACATCGTACTCGGAGCAGCGATTACAGTCGCAT 877
|.|| || ||.||.||.||.||..|.||.||.||||||||.||.||.|
BPUM_2605___b 830 TTGG--CAGCTTAGGAAATATTGTGTTGGGTGCTGCGATTACGGTGGCTT 877
BSNT_04309___ 878 GTTTAACAACAAGCATCGGCCTTGTCACATCTTGCGGCCAATATTTTTCA 927
|||||||.|||||.|||||.||.||.|||||.|||||..|.|||||.||
BPUM_2605___b 878 GTTTAACGACAAGTATCGGTCTCGTTACATCATGCGGAGAGTATTTCTC- 926
BSNT_04309___ 928 AAACTTATT-CCGGCATTATCATATAAAATTGTCGTTACGATTGTCACGT 976
.||.||||| ||...|.|.||.||||||||.||||||||..|.||.||.|
BPUM_2605___b 927 GAATTTATTACCTAAACTTTCTTATAAAATGGTCGTTACACTCGTGACAT 976
BSNT_04309___ 977 TATTCAGCTTGATCATTGCGAATTTCGGACTCGCGCAAATTATCGCGTTT 1026
|||||||.||.||||||.|.|||||.|||||.||.||.|||||.||.||.
BPUM_2605___b 977 TATTCAGTTTTATCATTTCAAATTTTGGACTTGCTCATATTATTGCTTTC 1026
BSNT_04309___ 1027 TCTGTTCCTATTTTATCAGCTATCTATCCGCTTGCCATTGTCATTATCGT 1076
|||||.||..|||||.|.||.||.||.||.||.||.||||||||.||.||
BPUM_2605___b 1027 TCTGTCCCAGTTTTAACTGCCATTTACCCACTAGCGATTGTCATCATTGT 1076
BSNT_04309___ 1077 TCTTTCCTT--CATCGATAAGA-----TCTTTAAAGAAAGACGCGAAGTG 1119
|.|.||..| || ||| ||| |..|.|||| ||||| ..||.
BPUM_2605___b 1077 TTTGTCGCTAGCA--GAT-AGATGGATTGGTCAAAG-AAGAC---CTGTT 1119
BSNT_04309___ 1120 TACATCGCTTGC-TTGATCGGTACAGGACT-TTTCAGTATTTTAGACGGT 1167
|||.|| |||.| |||||....||||| || ..|||||.|.||.|||||.
BPUM_2605___b 1120 TACGTC-CTTACTTTGATTTTAACAGG-CTGCGTCAGTTTGTTTGACGGC 1167
BSNT_04309___ 1168 ATCAAAGCAGC----CGGTTTTTCAC--TTGGATCTTT---AGATGTGTT 1208
.|...|||||| | ||.| |||||.|..| .|||.|.||
BPUM_2605___b 1168 TTAGTAGCAGCGAAAC------TCCCGATTGGACCAGTGGAGGATCTCTT 1211
BSNT_04309___ 1209 TCTAAATGCGAATCTTCCTCTTTACA--GCCTCGGCATCGGCTGGGTGCT 1256
||.|| || ||.||.| |||||.| .|||.||.||.||.|||||..|
BPUM_2605___b 1212 TCAAA---CG-ATATTAC-CTTTATATGACCTTGGTATTGGTTGGGTTGT 1256
BSNT_04309___ 1257 TCCAGGAATCGTCGGAGCGGTTATCGG-------CTATGTGCTGACCTT- 1298
|||.|..||..||||||.|||.||.|| ||.|.| || |||
BPUM_2605___b 1257 TCCTGCTATTTTCGGAGTGGTCATTGGGTTCATTCTTTCT-CT---CTTC 1302
BSNT_04309___ 1299 -ATTCATCGGACCATCCAAACAGCTTAATGAAATAAG----TTAA 1338
.|||.||.| |.|||.||.|||...| ||||.||| ||||
BPUM_2605___b 1303 ACTTCTTCTG--CTTCCCAAAAGCGGGA-GAAACAAGCATCTTAA 1344
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