Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04307 and BPUM_2602
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_04307.1.24716.seq
# -bsequence dna-align/BPUM_2602___thiI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04307-BPUM_2602___thiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04307-BPUM_2602___thiI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04307
# 2: BPUM_2602___thiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1272
# Identity: 870/1272 (68.4%)
# Similarity: 870/1272 (68.4%)
# Gaps: 132/1272 (10.4%)
# Score: 2833.5
#
#
#=======================================
BSNT_04307 1 ATGAATTACGATCATATATTAATTCGTTTTGGGGAAATTTCGACCAAAGG 50
|||||.||.||||||||.|||.|.||||||||.||||||||.||.|||||
BPUM_2602___t 1 ATGAAATATGATCATATTTTAGTCCGTTTTGGTGAAATTTCAACAAAAGG 50
BSNT_04307 51 CAAAAACAGAAAAAGCTTTATTGAGCGCTTAAAACAAA------ACATCA 94
.|||||.|||||.|..|||||||| |||||.|| |.|||.
BPUM_2602___t 51 GAAAAATAGAAAGAAATTTATTGA------AAAACTAAGGCAGCATATCC 94
BSNT_04307 95 GACTCGTTTTGAAAGACTATCCGAA--TTTAAAATACTTTTCCA----AC 138
|..|.||.||||||||||.| |.| .|||||||| |.|| |.
BPUM_2602___t 95 GGTTTGTATTGAAAGACTTT--GTAGCATTAAAATA----TGCATCTGAT 138
BSNT_04307 139 AGGGATCGTATGACGATTACATTAAATGGAGAGGATCCTGAGGCTCTTTT 188
||.||.||.||.|||||||...|.||.|||||.||.|||||..|..||
BPUM_2602___t 139 AGAGACCGCATTACGATTATGCTGAACGGAGAAGACCCTGAACCGATT-- 186
BSNT_04307 189 TCCTCA------TTTAAAGCAAGTG--TTTGGGATTCAAAGCTTCAGCCT 230
||| .|||||| ||| |||||.|||||||||||.||.||
BPUM_2602___t 187 ---TCAGAACAGCTTAAAG---GTGTATTTGGCATTCAAAGCTTTAGTCT 230
BSNT_04307 231 GGCAATTAAGTGTGACAGCCGC----CTTGATGATATTAAGGCAACCGCA 276
|||..|.||.|||||.| | |||||||..|||||.|.|.|.|||
BPUM_2602___t 231 GGCGGTGAAATGTGAGA----CAAATCTTGATGCCATTAAAGAAGCGGCA 276
BSNT_04307 277 CTAAAGGC--TATCA--AAGATCAGTATAAACCAGGTGATACGTTTAAAG 322
||.|..|| || || ||| .||||.|||.|||..||||.|||||.|
BPUM_2602___t 277 CTCACAGCGGTA-CAGGAAG---TGTATGAACAAGGAAATACATTTAAGG 322
BSNT_04307 323 TCGCGACAAAGAGAGCGTATAAGCAATTTGAATTAGATACAAACCAAATG 372
||.|.||.||..|..|.|||||.|||||||||.|.|||.||||..|||||
BPUM_2602___t 323 TCTCAACGAAACGGTCTTATAAACAATTTGAACTTGATTCAAATGAAATG 372
BSNT_04307 373 AACGCTGAAATCGGCGGCCATATTTTGCGAAATACAGAAGGATTGACGGT 422
|||..||||||.||.||.|||.|..||.|.|||||||||...||.|||||
BPUM_2602___t 373 AACCGTGAAATTGGTGGACATGTGCTGAGGAATACAGAAAACTTAACGGT 422
BSNT_04307 423 CGATGTTCGCAACCCAGACATCCCGCT---CA-----GAATCGAAATCAG 464
|.|||| ||.|||.||.|.| || |.||.|||||.||
BPUM_2602___t 423 CAATGT--------CAAACAGCCGGATGTGCATTTGCGTATTGAAATAAG 464
BSNT_04307 465 GGAAGAAGCAACATTTTTGACAATTCGTGATGAAAAAGGTGCAGGCGGGT 514
.|||.|.||.||||.|.|.|||.||...||||..||||||||||||||.|
BPUM_2602___t 465 AGAACAGGCGACATATATTACATTTAAAGATGTCAAAGGTGCAGGCGGAT 514
BSNT_04307 515 TGCCAGTTGGTTC-AGCAGGAAAAGCGATGCTGATGCTTTCTGGCGGTTT 563
||||.|||||||| ||| ||||.|||||||||.||||||||.||.||.||
BPUM_2602___t 515 TGCCGGTTGGTTCAAGC-GGAAGAGCGATGCTCATGCTTTCAGGAGGCTT 563
BSNT_04307 564 TGACAGCCCTGTTGCCGGTTTTTATGCGATGAAACGGGGCTTGTCGGTA- 612
|||||||||.||||||||.|.|.|.||.|||||||| |||||
BPUM_2602___t 564 TGACAGCCCAGTTGCCGGCTATCAAGCAATGAAACG--------CGGTAT 605
BSNT_04307 613 -------GAAGCTGTTCATTTCTTCAGCCCGCCATACACAAGCGAGCGCG 655
||.|||||.||||||||.||.||.|||||.|||||.||.||.|
BPUM_2602___t 606 TCAAATTGAGGCTGTCCATTTCTTTAGTCCCCCATATACAAGTGAACGTG 655
BSNT_04307 656 CAAAGCAAAAGGTAATGGATCTGGCGAAATG----TCTGTCCCGTTTTG- 700
|.|||||||||||.||.||||||.|..|||| .||| |.|.|.|
BPUM_2602___t 656 CCAAGCAAAAGGTCATTGATCTGACAGAATGCTTAGCTG---CATATGGA 702
BSNT_04307 701 GGGGAAGCATGACACTTCATATTGTTCCATTTACAAAAACGCAAGAGCTC 750
||.||| ||.|.||||||.||.||.||.||||||||||..||||||||.
BPUM_2602___t 703 GGCGAA--ATAAAACTTCACATCGTCCCTTTTACAAAAATTCAAGAGCTG 750
BSNT_04307 751 ATTCAAAAACAAATTCCTGAAAATTACACAATGACGGCAACCCGCCGCCT 800
|||||.||||||.|.||||||||.||.||.|||||..||||..|..|..|
BPUM_2602___t 751 ATTCATAAACAAGTACCTGAAAACTATACGATGACATCAACAAGAAGAAT 800
BSNT_04307 801 CATGCTTCAGATCGCCGACAGAATCAGAGAAAAGAGAAACGGGCTTGCCG 850
.|||||..|.||.||.||.|.|||.|||||.|||.|..|.|..|||||..
BPUM_2602___t 801 GATGCTGAAAATTGCAGATAAAATAAGAGAGAAGCGTGATGCTCTTGCAA 850
BSNT_04307 851 TTATTACGGGAGAAAGCCTCGGTCAGGTAGCGAGCCAAACGCTTGAAAGC 900
|||||||.||.||||||||.||.||.||.||.||.|||||.|||||||||
BPUM_2602___t 851 TTATTACTGGTGAAAGCCTTGGACAAGTCGCAAGTCAAACACTTGAAAGC 900
BSNT_04307 901 ATGTATGCAATTAATGCGGTGACGTCA--ACACCGATTTTGCGTCCGCTA 948
||||||||.|||||....||||| || |||||.||..|.||.|||||.
BPUM_2602___t 901 ATGTATGCCATTAACCATGTGAC--CAATACACCAATCATTCGCCCGCTT 948
BSNT_04307 949 ATCGCCATGGACAAAACAGAAATCATCGAAAAATC---ACGGGAAATTGG 995
||.||..|.||.||.|..||.||.||.||..||.| ||| ||||||
BPUM_2602___t 949 ATTGCGGTTGATAAGAATGATATTATTGATGAAGCGAGACG---AATTGG 995
BSNT_04307 996 CACATATGAGACAAGCATTCAGCCGTTTGAAGACTGCTGCACGATCTTTA 1045
.||.||.|||||||||||||||||.||.||.||.||||||||||||||||
BPUM_2602___t 996 TACTTACGAGACAAGCATTCAGCCTTTCGAGGATTGCTGCACGATCTTTA 1045
BSNT_04307 1046 CACCGCCAAGCCCGAAAACACGCCCTAAA--AAA----GAGAAAATTGAA 1089
|.|||||....||.|||||| ||| ||| ||||||.|.|||
BPUM_2602___t 1046 CGCCGCCGTCTCCTAAAACA------AAACCAAAGCTTGAGAAAGTAGAA 1089
BSNT_04307 1090 CACTTTGAAAGCTTTGTTGATTTCGAGCCGTAT-ATTCAAGAAGCGGTAG 1138
|.||..||||||||||.||||||.||||| .|| .||.|.||.||.||.|
BPUM_2602___t 1090 CGCTACGAAAGCTTTGCTGATTTTGAGCC-AATGCTTGATGAGGCAGTGG 1138
BSNT_04307 1139 ATAACATTGAGACAATGACCCTGTATAGCGAACAAGAA----GCTAACGA 1184
|..|.||.||.||.||.|.|.|..|.|..| |.||||| ||..|||
BPUM_2602___t 1139 AGCAAATCGAAACGATCATCGTCAAAAATG-AGAAGAAAGCGGCAGACG- 1186
BSNT_04307 1185 TAAATTCGCTGAACTCTTTTAA 1206
||||||||||..|.||.|||
BPUM_2602___t 1187 --AATTCGCTGATTTATTCTAA 1206
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