Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04305 and BPUM_2600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04305___ytcI.1.24716.seq
# -bsequence dna-align/BPUM_2600___ytcI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04305___ytcI-BPUM_2600___ytcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04305___ytcI-BPUM_2600___ytcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04305___ytcI
# 2: BPUM_2600___ytcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1680
# Identity: 1127/1680 (67.1%)
# Similarity: 1127/1680 (67.1%)
# Gaps: 189/1680 (11.2%)
# Score: 3668.0
#
#
#=======================================
BSNT_04305___ 1 GTGTTAAAACGTGAAGATTTAATTGCCCCTATGCAATATAATTTAGTGAA 50
.|.|||.|.|||||.||||||||.||....||||||||.|||||.|.
BPUM_2600___y 1 ---ATGAAAAGAGAAGACTTAATTGCACCAGAACAATATAACTTAGTCAG 47
BSNT_04305___ 51 TGAAATGGAAAAGTTCAGTGCCGCTGGACAA----AAAACCGCTCTTCTG 96
|||.||.|||..||||||| |..||||| ||||..||.||.|..
BPUM_2600___y 48 TGAGATTGAAGCGTTCAGT----CATGACAAGAAGAAAATGGCCCTGCAC 93
BSNT_04305___ 97 TGGGAGGACG--AGT-----CGGGTAAGCAAGAATCTTG-GTCGTATGAA 138
|||.||||.| |.| || ||||| |.|| |.|.||||
BPUM_2600___y 94 TGGCAGGATGGAAATGGCCACG---AAGCA-----CATGTGACATATG-- 133
BSNT_04305___ 139 AAGCT---GATGGAAGAAACAAATAAAATCGGAGCGGCCTTAGCTGATCT 185
.|||| | ||||||||.||||||||||.|| |.|..|..|.|
BPUM_2600___y 134 CAGCTTTAG-TGGAAGAAGCAAATAAAATTGG-------TCATGTATTAT 175
BSNT_04305___ 186 T-------GGATTTAAAAAGGGAGACAAGCTGATTGTAATGGTTCCGCGG 228
| ||.||||||||.||.||.||..|.|||||.|||||.|||||.
BPUM_2600___y 176 TAAATGCAGGCTTTAAAAAAGGCGATAAAATCATTGTGATGGTGCCGCGC 225
BSNT_04305___ 229 GTGCTTGAAGCCTATGCTG--TTTATTTGGCTATCCTGAAATCAGGAATG 276
.||||.||.|| ||.|.| |||||||.||.|||.|||||.||||||||
BPUM_2600___y 226 ATGCTAGAGGC--ATACAGCATTTATTTAGCGATCTTGAAAACAGGAATG 273
BSNT_04305___ 277 GTTGTCATTCCGTGCTCCGAAATGCTTCGCGCGAAAGATCTTGAATACCG 326
|||||||||||.||.||.||||||||.||.||.||||||.|.||.|||||
BPUM_2600___y 274 GTTGTCATTCCTTGTTCAGAAATGCTGCGTGCAAAAGATTTAGATTACCG 323
BSNT_04305___ 327 GATTGAACATGCAGAGGTAAAAGGCGCTATCGTCTACTCAGAATTTATTG 376
.||||.|||||||||.|.|||.||.||.|||||.||.||...|||.||
BPUM_2600___y 324 AATTGCACATGCAGAAGCAAAGGGAGCGATCGTTTATTCTTCATTCAT-- 371
BSNT_04305___ 377 GCGCTTTCCGGGATGTCA---GTACGACTGA----------CAAACTGAT 413
||| ||.||||.|| ||||| |||
BPUM_2600___y 372 ---------------TCAATCGTTCGACGGAACCCAAAAACCAAAC-GAT 405
BSNT_04305___ 414 T-----ACACTGTCTATTGGTGAAAATGATGCCGACTGGAAAAACCTCTT 458
| |||.|.||.||.|||||.||.|||...|..||||.||||
BPUM_2600___y 406 TTTAAAACATTCTCAATCGGTGAGAACGATCATGGTTGGACAAAC----- 450
BSNT_04305___ 459 ATCAATTGAAGCG--GACGGAAG-CCAATTTA---------AAACAGCTG 496
|||...||| .|.||||| .||||.|| |||..|||.
BPUM_2600___y 451 ----ATTCTCGCGCAAAAGGAAGAGCAATCTAGCGAGCTGCAAATGGCTC 496
BSNT_04305___ 497 ACACAACAAGAGATGATATGGCTTTCTTATCTTATACATCCGGGACAACA 546
..||||||.|...|||||||||.||||||||.||||||||.||.||||||
BPUM_2600___y 497 CAACAACACGTACTGATATGGCGTTCTTATCCTATACATCTGGTACAACA 546
BSNT_04305___ 547 GGTCAGCCGAAAGGTGTTGTACATACACATGGATGGGCATTTGCTCATTT 596
||..|.||.|||||.|||||.|||||||||||.|||||||.|||.|||||
BPUM_2600___y 547 GGCAATCCCAAAGGGGTTGTTCATACACATGGCTGGGCATATGCACATTT 596
BSNT_04305___ 597 AAAAACTTCTGCCGGCGCTTGGCTTGATATTTCTGAAAAGGATATCGTCT 646
|...||..|.|||...||.||||||...|||..||||..|||||..||.|
BPUM_2600___y 597 ACGCACGGCCGCCAAAGCATGGCTTTCCATTAATGAAGGGGATAAAGTAT 646
BSNT_04305___ 647 GGGCAACTGCTGCCCCTGGCTGGCAAAAGTGGGTATGGAGTCCGTTTTTA 696
||||.||.||.|..||.||.||||||||.|||||.|||||.||..|.|||
BPUM_2600___y 647 GGGCGACAGCAGGACCAGGGTGGCAAAAATGGGTGTGGAGCCCTCTCTTA 696
BSNT_04305___ 697 GCGGTGCTTGGCAGCGGAGCAACCGGTTTTGTGTAC-CACGGCAGATTCA 745
.|.|||.|.||.|||||.|||...||||||||.||| .|.||.|| ||||
BPUM_2600___y 697 TCAGTGTTAGGAAGCGGGGCAGAAGGTTTTGTATACGGAGGGAAG-TTCA 745
BSNT_04305___ 746 AAGCAGAAAAATATCTAGAGCTTTTAAATCGCTACA--------AAATCA 787
|..||.|.|..||..||||.|| |||.|| ||||||
BPUM_2600___y 746 ATCCAAATACGTACTTAGAACT--------GCTTCAAAAAAATGAAATCA 787
BSNT_04305___ 788 ATGTTTTCTGCTGCACGCCTACAGAATACCGCTTAATGGCGAAGGTTGAA 837
||||..|.|||||.|||||.|||||||||.|.||.||||||||.||.||.
BPUM_2600___y 788 ATGTCCTATGCTGTACGCCGACAGAATACAGATTTATGGCGAAAGTAGAT 837
BSNT_04305___ 838 GGCTT------GGACCGTTTTGATCTTTCTGCC----CTGCACAGCGCTG 877
|.||| |.|| ||.||| || ||.||.||.||.|
BPUM_2600___y 838 GACTTAAGTCAGTAC------GAGCTT----CCAAAGCTACATAGTGCCG 877
BSNT_04305___ 878 TTTCCGCAGGTGAGCCGCTCAACCGTGAAGTCATTGATGTTTTCCAAAAG 927
|.||.||.||.|||||||||||||||||||||||||||...||..|||||
BPUM_2600___y 878 TGTCTGCGGGAGAGCCGCTCAACCGTGAAGTCATTGATACATTTAAAAAG 927
BSNT_04305___ 928 CACTTTGGCATTAAGGTACGGGACGGATATGGCCAAACAGAAAGCACGCT 977
||.||.|..||..|.|||||.|||||.||||||||||||||||||||.||
BPUM_2600___y 928 CATTTCGATATAGAAGTACGAGACGGCTATGGCCAAACAGAAAGCACACT 977
BSNT_04305___ 978 TTTGGTTGGTGTTTTGAAAG--AT--ACGCCTATTAAACCGGGAAGCATG 1023
..|.||.||.||..|.|||| || || ||.||.||.||.||.|||
BPUM_2600___y 978 GCTCGTAGGGGTGCTAAAAGGAATGGAC----ATCAAGCCTGGGAGTATG 1023
BSNT_04305___ 1024 GGAAAACCGACACCGGGAAATCAGGTGGAGATCATAAATGAAGACGGTGA 1073
||||||||.|||||.|||||..|.||.||||||||..||||.|||||...
BPUM_2600___y 1024 GGAAAACCAACACCTGGAAACGAAGTCGAGATCATTGATGAGGACGGCAG 1073
BSNT_04305___ 1074 AATCTGCAAACCTGGTGAGGTTGGCGATATCGCTGTTCACCTCAGTACGC 1123
.||.|||...|||||.||.||.||.||.||.||.|||||.||....||||
BPUM_2600___y 1074 CATATGCGCTCCTGGAGAAGTAGGTGACATTGCGGTTCATCTTGAAACGC 1123
BSNT_04305___ 1124 CTGCGCTCTTTAAAGAGTATTTTAAAGATCCGGAAAGA----ATGAAAAC 1169
|.||..|.|||||.||.||.|..|||||| .|||| |.|||..|
BPUM_2600___y 1124 CGGCTTTATTTAAGGAATACTACAAAGAT----GAAGAGCGTACGAAGGC 1169
BSNT_04305___ 1170 ACAAATTCGCGGCGATTATTTCCTAACGGGAGACAGAGCAAGAAAAGATG 1219
.||....|||||..||||.||..|.||.||.|||.|.||.|.||||||||
BPUM_2600___y 1170 GCAGCGCCGCGGGAATTACTTTATTACTGGTGACCGTGCGAAAAAAGATG 1219
BSNT_04305___ 1220 AGGAAGGTTACTTCTGGTTTGAAAGCCGAAATGACGATATTATTATCAGC 1269
|.||.||.||||||||||||||||||||.|..||.|||||.||..|||||
BPUM_2600___y 1220 AAGATGGCTACTTCTGGTTTGAAAGCCGCAGAGATGATATCATCGTCAGC 1269
BSNT_04305___ 1270 TCCGGCTATACGATCGGGCCTTTCGAGGTGGAAGACGCGCTTGTTAAGCA 1319
||.||||||||.||.|||||.||.||.||.|||||.|||||..||||.||
BPUM_2600___y 1270 TCAGGCTATACCATTGGGCCGTTTGAAGTAGAAGATGCGCTGATTAAACA 1319
BSNT_04305___ 1320 CCCAGAAGTAAAAGAATGTGCTGTTGTCGCAAGCCCTGATGAAATCAGAG 1369
|||||.|||.|||||||||||.|||||.||.||.||.|||||||||||||
BPUM_2600___y 1320 CCCAGCAGTGAAAGAATGTGCGGTTGTGGCGAGTCCAGATGAAATCAGAG 1369
BSNT_04305___ 1370 GCTCCATCGTAAAGGCATATGTTGTCC----TGCAAAATCATGAAAAACG 1415
|.||||||||.|||||||||||||||| ||...|||||..|.||
BPUM_2600___y 1370 GATCCATCGTGAAGGCATATGTTGTCCTACGTGATGAATCAGCACAA--- 1416
BSNT_04305___ 1416 CAGTGATGAGCTTGTCAAAATGCTGCAAAACCATGTGAAGACGATTACCG 1465
|||||||||||..|||||..||||||||..||||||||.|..|..||.|
BPUM_2600___y 1417 -AGTGATGAGCTAATCAAAGAGCTGCAAACACATGTGAAAAACACAACAG 1465
BSNT_04305___ 1466 CTCCATACAAATATCCTAGAGAAATTGAAT---TTGTGGAAAGCCTGCCG 1512
|.||.||||||||.||.||||||||||||| |||..||| |||||.
BPUM_2600___y 1466 CACCTTACAAATACCCAAGAGAAATTGAATTCATTGACGAA---CTGCCA 1512
BSNT_04305___ 1513 AAAACGGCTTCTGCAAAAATCAGACGAGTGGAATTAAGAAAACGTGAAGA 1562
|||||..|.||.||.||||||.|.||.||.||..|.||| |||..
BPUM_2600___y 1513 AAAACACCGTCAGCGAAAATCCGTCGCGTCGAGCTGAGA------GAAAG 1556
BSNT_04305___ 1563 ACAGCTCAAAGCCAATAAAAAGG--CGTAA 1590
|.|||| .|| |..|||||| |.|.|
BPUM_2600___y 1557 AGAGCT---TGC--ACGAAAAGGATCTTGA 1581
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