Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06074 and BPUM_2591
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06074___yxeB.1.24716.seq
# -bsequence dna-align/BPUM_2591.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06074___yxeB-BPUM_2591.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06074___yxeB-BPUM_2591.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06074___yxeB
# 2: BPUM_2591
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 585/1124 (52.0%)
# Similarity: 585/1124 (52.0%)
# Gaps: 361/1124 (32.1%)
# Score: 1314.0
#
#
#=======================================
BSNT_06074___ 1 ATGAAAAAGAACATATTGCTCGTGGGCATGCTTGTGCTGCTTCTCATGTT 50
||| |||||.||||||.|| |.| |||.|.|||||.||
BPUM_2591 1 ATG---AAGAAAATATTGTTC---------CCT---CTGATGCTCATCTT 35
BSNT_06074___ 51 TGTCAGCGCTTGCA----------GCGGC-------ACGGCT-----TC- 77
||| .|||||| |.||| ||.||| ||
BPUM_2591 36 TGT----ACTTGCATTGAGCGCATGTGGCAATAGCAACAGCTCTTCCTCA 81
BSNT_06074___ 78 --TAAAGGGAGCTCAAGCGATTCTGCTTCCGAAAAAACAGAAATGAGAAC 125
|||| |||..|||| |||..|..|.||||.|.||..||
BPUM_2591 82 AATAAA-GGAAATCAA-----------TCCACATCATCAGACAAGATTAC 119
BSNT_06074___ 126 ATACAAATCACCAAAAGGGAAC-GTCAACATTCCTGCACATCCGAAACGC 174
|||..|||| ..||||.||..| ||.||..|.||.||.|||||.|||||.
BPUM_2591 120 ATATGAATC-TGAAAATGGCCCTGTGAAGCTGCCAGCCCATCCAAAACGT 168
BSNT_06074___ 175 ATCGT--CAC-TGATTTTTATGCCGGTGAATTGCTGTC-TGTC----GGG 216
.|||| .|| ||..|.|||..|.|||.| |||| |||| ||.
BPUM_2591 169 GTCGTTGTACTTGGCTCTTACACTGGTAA-----TGTCATGTCACTTGGT 213
BSNT_06074___ 217 GCCAATGTGGTCGGC-TCAGGCTCATGGTCATTTGATAATC--CGTTTTT 263
|..||..|||||||| || |.|||.||||||....|.||.| ||.||..
BPUM_2591 214 GTGAAGCTGGTCGGCGTC-GACTCTTGGTCAAAAAAGAACCCTCGCTTCC 262
BSNT_06074___ 264 AAAATCAAAGCTGAAAAATGTGAAGGATGT-TGGTGAT-CCAATAAGCGT 311
|.||..|| ||.|||||||||.|.||.|| |.| ||| ||||| ||
BPUM_2591 263 AGAAGGAA--CTAAAAAATGTGGAAGAAGTATCG-GATGCCAAT----GT 305
BSNT_06074___ 312 TGAAAAAGTGATGGAGCTTCAGCCTGACTTAATTGTTGTCATGAATG--- 358
.||||||.|.|||.||.|..||||||| ||||||.|.||
BPUM_2591 306 CGAAAAAATCATGAAGTTAAAGCCTGA---------TGTCATCATTGGCT 346
BSNT_06074___ 359 -AAG--------AGAATGTTGATAAATTAAAGAAAATCGCTCCGACTG-- 397
||| |.|||||.||.|||.|.||.||||||||.||.||||
BPUM_2591 347 TAAGCAATACAAAAAATGTAGAAAAACTGAAAAAAATCGCACCAACTGTC 396
BSNT_06074___ 398 TTGTCATACCTTATAACACAG-CGAAAAACGTAGAAGACACAGTCAGCAT 446
|||| |..|.|||||||.|| |||..|.|.| ||| ||.|||
BPUM_2591 397 TTGT--TTACGTATAACAAAGTCGATTACCTT--------CAG-CAACAT 435
BSNT_06074___ 447 GTTCGGAGATATCGCCGGAGCGAAAG------ACAAAGCAAAA------- 483
.|| ||.|| .||| |||| ||||||.||||
BPUM_2591 436 ATT----GAAAT---TGGA---AAAGTATTAAACAAAGAAAAAGAAGCCA 475
BSNT_06074___ 484 --TCCTTTATGGCT----GACTTTAACAAAAAAGCG-----GAAGCAGCT 522
.| ||||.| ||.|||| ||.||.||| |||||.|
BPUM_2591 476 AGGC----ATGGGTAAAAGATTTTA--AAGAACGCGCTGCTGAAGCTG-- 517
BSNT_06074___ 523 AAGAAGA-AAATTGCCGGCGTCATCGACAAAGATGCAAC--CTTCGGCAT 569
|||.| |||||...|.|...||||..||||||||||| .|||.| |
BPUM_2591 518 --GAAAAGAAATTAAAGCCAAAATCGGTAAAGATGCAACGGTTTCAG--T 563
BSNT_06074___ 570 TTATGAAAAC-ACAGACAAGGGCGAAT-TCTGGGTGTTCAATGA--CAAT 615
.|.|||||.| .||.|.||| || |.|..|||||...||| | ||
BPUM_2591 564 CTTTGAAAGCGGCACAAAAG-----ATCTTTACGTGTTTGGTGATGC-AT 607
BSNT_06074___ 616 GGCGGACGCGGC------------GGCCAAGCTGTATACAATG-CACTTG 652
|| ||.|||||| ..||||| ||||| .||
BPUM_2591 608 GG-GGCCGCGGCACAGAAATTCTTTACCAAG-------CAATGAAAC--- 646
BSNT_06074___ 653 GGTTAAAAGCGCCTGAAAAAATTGAGCAAGATGTCATCAAAAAAGGAGAG 702
|||||..||||||||||.| |||||.|.||
BPUM_2591 647 ---TAAAAATGCCTGAAAAAGT------------------AAAAGAAAAG 675
BSNT_06074___ 703 --ATGAAACAGC--------------TCTCTCAAGAGGTTATTCCTGAGT 736
||.||| ||| |.||.||.|||||.||||||||.|
BPUM_2591 676 GCATTAAA-AGCTGGCTACTATGCCGTTTCACAGGAGGTCATTCCTGAAT 724
BSNT_06074___ 737 ATGCCGCAGATTATATGTTCATTACGGATTACAACCCGAAAGGCGAAAGC 786
.|||.|.|||.||||||.||||||...|..||| ||||||
BPUM_2591 725 TTGCTGGAGACTATATGATCATTAGTAAAAACA---------GCGAAA-- 763
BSNT_06074___ 787 AAAACACTCGACAAGCTGGAGAATTCCT------CCATTTGGAAAAATCT 830
||||.||||||| .||.| |||| |
BPUM_2591 764 ----------------TGGACAATTCCTATCAAAACAGT--GAAA----T 791
BSNT_06074___ 831 TGAC------------GCTGTTAAACATAATCGCGTGTTTAT---CAATG 865
|.|| |||||.|||.|..||||.||||.|.| .||||
BPUM_2591 792 TTACAAGTCCATCCCAGCTGTGAAAAAACATCGTGTGTATGTGGCAAATG 841
BSNT_06074___ 866 ------------ACTTTGACTCGTTCTACCCGTACGACCCGATTTCTGTC 903
|.|||.| .|.||.||.| || ||.|||
BPUM_2591 842 CAGAAGAATTCTATTTTAA--TGATCCACTC--AC-ACTCGA-------- 878
BSNT_06074___ 904 AGCAAACAGGTGGATATCATCACCGACATGCTGATCAAACGGGCCGAA-- 951
|||||| ||...|||.|| |.||| ||
BPUM_2591 879 -------------ATATCA--ACTATCATTCT--TTAAA-------AAGC 904
BSNT_06074___ 952 ---------GAAAATAAAAAATAA 966
|.||||||
BPUM_2591 905 ACTTTTTAGGTAAATAA------- 921
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