Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03127 and BPUM_2589
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03127___yocF.1.24716.seq
# -bsequence dna-align/BPUM_2589___desK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03127___yocF-BPUM_2589___desK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03127___yocF-BPUM_2589___desK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03127___yocF
# 2: BPUM_2589___desK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1177
# Identity: 822/1177 (69.8%)
# Similarity: 822/1177 (69.8%)
# Gaps: 104/1177 ( 8.8%)
# Score: 2761.0
#
#
#=======================================
BSNT_03127___ 1 ATGATTAAAAATCATTTTACATTTCAAAAACTAAACGGGATTACGCCCTA 50
||.|||||.||.||||.|.||||||||.|..|.||||||.|.|||||
BPUM_2589___d 1 ---ATGAAAAAACAGTTTAAAATTCAAAAATTGCATGGGATTTCTCCCTA 47
BSNT_03127___ 51 TATATGGACGATATTTTTCATCCTCCCCTTCTACTTTATATGGAAATCAT 100
|||||||.|.||.|||||||||||.||||||||.|||||.|..||..|..
BPUM_2589___d 48 TATATGGGCCATTTTTTTCATCCTGCCCTTCTATTTTATCTTAAAGACGC 97
BSNT_03127___ 101 CATCTACATTTGTTATTATTGTCGGCATCATTTT-GACGCTTTTATTTTT 149
|..|.||.||.|.||||.|..|.|||||.||||| .||| |..|||||
BPUM_2589___d 98 CTACGACTTTAGGTATTGTCATTGGCATTATTTTAAACG---TGGTTTTT 144
BSNT_03127___ 150 TTCG--GTATATCGATTTGCTTTTGTCTCAAAAGGCTGGACCATTTATTT 197
|||| ||.|||||.|||||.||||||.|||||||||||.| |||||.|
BPUM_2589___d 145 TTCGGAGTGTATCGTTTTGCCTTTGTCGCAAAAGGCTGGTC--TTTATAT 192
BSNT_03127___ 198 G--TGGGGATTTTTATTAATTGGCATTTCAACCGCCTCCATTACCCTGTT 245
| |..||..|||||||.||||..|||||.||.|.||...|.|..||.|.
BPUM_2589___d 193 GTCTTCGGTCTTTTATTGATTGCGATTTCGACTGGCTATGTGATGCTCTA 242
BSNT_03127___ 246 CAGTTATATTTATTTTGCTTTTTTTATCGCGTATTTTATTGGAAACATT- 294
|||.||.||||||||.|||||||..|||||.|||||.|.|||..|||||
BPUM_2589___d 243 CAGCTACATTTATTTCGCTTTTTGCATCGCCTATTTCAATGGGCACATTA 292
BSNT_03127___ 295 -AAGGAACGCGTCCCTTTTCATATTTTATATTATGTCCATTTAATAAGCG 343
|||.|| .|||||||||.||||||||||.|||.|.|||.||...||||
BPUM_2589___d 293 AAAGAAA--AGTCCCTTTTTATATTTTATACTATATTCATCTAGGGAGCG 340
BSNT_03127___ 344 CAGCCGTCGCAGCCAATTTCAGTCTCG-TATTAAAAAAGGAATTCTTTCT 392
|.|||||.||.|..||.||.|| ||.| |.||||||||||..|..|||||
BPUM_2589___d 341 CCGCCGTAGCCGTGAACTTTAG-CTTGATTTTAAAAAAGGGCTGGTTTCT 389
BSNT_03127___ 393 GACACAAATTCCTTTTGTCGTCATTACCCTCATCAGCGCAATTTTATTGC 442
.|||||||||||||||||.||.||.||.||.||.||.||.|||.|..|.|
BPUM_2589___d 390 CACACAAATTCCTTTTGTTGTGATCACACTTATTAGTGCCATTCTCCTTC 439
BSNT_03127___ 443 CCTTTAGTATAAGAAGCCGCAAGGAGCGCGAACGGCTTGAAGAAAAGCTC 492
|..|.||.||..|||||||.||.||.||.|||||.||||||||.||..|.
BPUM_2589___d 440 CTCTCAGCATTCGAAGCCGAAAAGAACGTGAACGCCTTGAAGAGAAATTA 489
BSNT_03127___ 493 GAGGATGCAAATGAACGGATTGCAGAACTGGTAAAATTAGAAGAACGTCA 542
||..||||.|||||||||||.||.||.||.|||||..|.||||||.|.||
BPUM_2589___d 490 GAAAATGCCAATGAACGGATCGCCGATCTTGTAAAGCTTGAAGAAAGGCA 539
BSNT_03127___ 543 GCGAATTGCCCGCGATCTCCATGATACGCTTGGGCAAAAGCTTTCTCTTA 592
|||.||.||.||.|||||.|||||.||.|||||.||||||||||||||||
BPUM_2589___d 540 GCGCATCGCACGTGATCTGCATGACACCCTTGGACAAAAGCTTTCTCTTA 589
BSNT_03127___ 593 TCGGTTTAAAAAGCGA-CTTAGCAAGAAAATTGATATACAAAGATCCCGA 641
|||||||||||||.|| ||| ||..|.|||.|..|.||.||||||||.|
BPUM_2589___d 590 TCGGTTTAAAAAGTGATCTT-GCCCGCAAACTCGTCTATAAAGATCCTG- 637
BSNT_03127___ 642 ACAAGCA-GCTCG---TGAACTGAAAAGTGTTCAGCAAACAGCGCGAACT 687
|||| ||||| |||.||||||||.||.|||||.||.||..||||.
BPUM_2589___d 638 ---AGCAGGCTCGTGCTGAGCTGAAAAGCGTCCAGCAGACCGCCAGAACA 684
BSNT_03127___ 688 TCTTTAAATGAAGTAAGAAAAATCGTTTCCTCTATGAAGGGCATACGGCT 737
|||.|.||||||||..|.||.||.|||||||||||||||||||||||..|
BPUM_2589___d 685 TCTCTCAATGAAGTGCGGAAGATTGTTTCCTCTATGAAGGGCATACGCAT 734
BSNT_03127___ 738 CAAGGATGAATTGATC-AACATCAAACAAATTCTCGAAGCAGCTGACATT 786
||||||||||.|| || |||||..|.||||||||||||||.||.|..|||
BPUM_2589___d 735 CAAGGATGAAATG-TCGAACATTGAGCAAATTCTCGAAGCGGCCGGAATT 783
BSNT_03127___ 787 ATGTTTATCTATGAAGAAGAGAAATGGCCCGAAAATATCTCATTGCTGAA 836
...||.||||||||.|||.||.||..|||..||.|.|||||..|.||.||
BPUM_2589___d 784 GAATTGATCTATGATGAAAAGGAAGCGCCAAAACACATCTCTCTTCTTAA 833
BSNT_03127___ 837 TGAAAACATTTTGAGTATGTGCTTAAAGGAAGCTGTCACAAATGTCGTCA 886
.|||||||||.|.||.||||||.|.||.||.|||||.|||||||||||||
BPUM_2589___d 834 CGAAAACATTGTCAGCATGTGCATCAAAGAGGCTGTGACAAATGTCGTCA 883
BSNT_03127___ 887 AACACAG--------CCA--GGCTAAAACTTGCCGAGTTGAC-ATTCAGC 925
||||.|| ||| .||.||| |.|| |||||.|
BPUM_2589___d 884 AACATAGTGATGCGACCATCTGCAAAA-----------TCACGATTCATC 922
BSNT_03127___ 926 AGCTCTGGAAGGAAGTTGTGATAACAGTGTC--TGACGATGGAACATTCA 973
|....|..|||||||.|.| ||.||.|||| .||.|||||||||||.|
BPUM_2589___d 923 AAAAATCAAAGGAAGCTAT--TATCACTGTCGAGGATGATGGAACATTTA 970
BSNT_03127___ 974 AAGGAGAAGAAAATT-----CCTTTTCA----AAAGGACATGG-CTTACT 1013
||||.| ||| ||.|.||| ||.||.||.|| ||| .|
BPUM_2589___d 971 AAGGCG------ATTATCCCCCCTCTCAAACGAAGGGTCACGGTCTT-TT 1013
BSNT_03127___ 1014 CGGGATGAGAGAACGGCTTGAGTTTGCAAATGGAAGCCTTCACATCAATA 1063
.||.||.||||||.|..|.||.||||||||||||.||||.|..||..|.|
BPUM_2589___d 1014 AGGCATTAGAGAAAGATTGGAATTTGCAAATGGACGCCTGCGTATTGAGA 1063
BSNT_03127___ 1064 CCGAAA--ACGGAACCAAGCTTACCATG-GCAATTCCTAATAATTCA--- 1107
| ||| ||||.||.|||||.|.|||| || |||||.|||.|||||
BPUM_2589___d 1064 C--AAAGGACGGGACAAAGCTGATCATGAGC-ATTCCAAATGATTCAGCA 1110
BSNT_03127___ 1108 --AAATAA------------------- 1113
|||..|
BPUM_2589___d 1111 GCAAAAGACAAGGAGGGGATGAAATGA 1137
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