Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03125 and BPUM_2588
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03125___des.1.24716.seq
# -bsequence dna-align/BPUM_2588___des.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03125___des-BPUM_2588___des.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03125___des-BPUM_2588___des.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03125___des
# 2: BPUM_2588___des
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1136
# Identity: 756/1136 (66.5%)
# Similarity: 756/1136 (66.5%)
# Gaps: 157/1136 (13.8%)
# Score: 2458.0
#
#
#=======================================
BSNT_03125___ 1 ATGAC----TGAACAAAC---------CATTGCACATAAACAAAAACAGC 37
||||| |.||||||| ||...|||.|.||.||||..||.
BPUM_2588___d 1 ATGACGACTTCAACAAACACACAGCAGCAAGCCACTTTAAGAAAACAAGT 50
BSNT_03125___ 38 TGACAAAGCAAGTCGCTGCATTTGCTCAGCCTGAAA--CAAAAAACAGCC 85
||.| |||.||.||| .|||| || |||||||.||..
BPUM_2588___d 51 TGGC----CAATTCTCTG---GTGCT--------AATTCAAAAAAAAGTA 85
BSNT_03125___ 86 TGATTCAGCTTTTAAACACGTTTATCCCATTCTTCGGCCTATGGTTTCTT 135
|.|||||.||.||.||.||.||.||.|||||.||.||.||.|||||||||
BPUM_2588___d 86 TCATTCAACTCTTTAATACATTCATTCCATTTTTAGGGCTTTGGTTTCTT 135
BSNT_03125___ 136 GCTTATCTCAGCCTCGATGTCTCCTATCTTCTTACGTTAGCATTAACGGT 185
||.|||...|||||..|..|||||||||||.|.||..|....||..||||
BPUM_2588___d 136 GCCTATTATAGCCTGAACATCTCCTATCTTTTAACCCTCTTCTTTGCGGT 185
BSNT_03125___ 186 GATTGCCGCAGGTTTTCTGACAAGAA----TTTTTATCATCTTCCATGAC 231
.|||||.||.||||||.| ||.| |.|||||.||.||.||.|||
BPUM_2588___d 186 TATTGCAGCTGGTTTTTT----AGTACGTGTCTTTATTATTTTTCACGAC 231
BSNT_03125___ 232 TGCTGCCATCAATCTTTTTTCAAACA-AAAACGCTATAACCACATTCTCG 280
||||||||||||||.|||||.||||| ||..|||| .||.|||.|..|||
BPUM_2588___d 232 TGCTGCCATCAATCCTTTTTTAAACAGAAGCCGCT-GAATCACCTGTTCG 280
BSNT_03125___ 281 GTTTTCTGACAGGTGTCCTGACTTTATTCCCGTATCTTCAATGGCAGCAC 330
|.|||.|.||.||.||.||.||..|.|||||.|||||||||||||| .|.
BPUM_2588___d 281 GATTTGTAACGGGCGTACTCACCCTTTTCCCTTATCTTCAATGGCA-AAG 329
BSNT_03125___ 331 AG-CCATTCGATTCATCATGCGACTAGCAGCAATCTGGATAAACGCGGAA 379
|| .|||||.|||||.|||||.||.|||||.|||||.||.|||||.||.|
BPUM_2588___d 330 AGATCATTCAATTCACCATGCCACAAGCAGTAATCTAGACAAACGAGGTA 379
BSNT_03125___ 380 CAGGAGACATCTGGATGTTAACAGTAAACGAATATAAAGCTGCATCCAGA 429
|.||.|||||.|||.|.||.|||||.||.||||||.|||..|||||
BPUM_2588___d 380 CTGGTGACATTTGGCTTTTGACAGTCAAAGAATATCAAGAAGCATC---- 425
BSNT_03125___ 430 CGAACAAAGCTTGCA-----------TACAGACTTTATAGAAACCCGTTT 468
||||||.| ||||||.|||||.|.||.||.|||
BPUM_2588___d 426 -------AGCTTGGACGAAATTCCGCTACAGATTTTATCGTAATCCTTTT 468
BSNT_03125___ 469 ATCATGTTTATTCTCGGACCGATTTATGTTTTTCTGATCACGAACCGTTT 518
.|||||||||||.|.||||||||.|.|||.|||||..|.|..||||||||
BPUM_2588___d 469 GTCATGTTTATTTTAGGACCGATCTTTGTCTTTCTCTTAAAAAACCGTTT 518
BSNT_03125___ 519 TAAC--AAAAAAGGCGC------AAGA-CGCAAGGAACGTGTA-AACACA 558
.||| .|||||.||.| |||| ||| .|||||..||| ..||||
BPUM_2588___d 519 CAACGTCAAAAATGCTCGTAAAAAAGAGCGC-TGGAACACGTATTTCACA 567
BSNT_03125___ 559 TACCTTACGAATCTGGCAATTG---TCGCGTTGGCTGC--CGCTTGCTGT 603
.||.|.| |.||| |||| |.|| .||||| || |||
BPUM_2588___d 568 AACGTGA-GCATC-----ATTGCACTAGC---AGCTGCAACG-----TGT 603
BSNT_03125___ 604 CTGATCTTTGGCTGGCAATCGTTTTTACTGGTGCAAGGCCCGATATTTCT 653
||.||.|||||||||||...|||..|.||.||.|||||.||.||.||.||
BPUM_2588___d 604 CTTATTTTTGGCTGGCAGGAGTTCCTGCTTGTCCAAGGTCCCATCTTCCT 653
BSNT_03125___ 654 GATTTCAGGTTCAATCGGTGTTTGGCTCTTTTATGTGCAGCATACCTTTG 703
|||.|||||||||||||||||.|||||.||||||||.||||||||.||||
BPUM_2588___d 654 GATCTCAGGTTCAATCGGTGTATGGCTGTTTTATGTACAGCATACGTTTG 703
BSNT_03125___ 704 AAGATTCTTATTTTGAAGCGGATGAAAACTGGAGCTACGTTCAGGCTGCT 753
|.||||||||.||||||||.|||||..|.||||..||.||.|||||.|||
BPUM_2588___d 704 AGGATTCTTACTTTGAAGCAGATGAGCATTGGAATTATGTGCAGGCAGCT 753
BSNT_03125___ 754 GTTGAAGGCAGTTCATTTTATAAACTCCCGAAACTGCTTCAATGGCTAAC 803
||.|||||||||||.|||||.|||.|.||.||.||.|||||||||.||||
BPUM_2588___d 754 GTAGAAGGCAGTTCTTTTTACAAATTGCCAAAGCTTCTTCAATGGTTAAC 803
BSNT_03125___ 804 AGGCAATATTGGTTACCACCACGTTCATCATTTGAGTCCAAAGGTGCCTA 853
|||||||||.|||||.|||||.||.||||||||.|||||.|.||||||.|
BPUM_2588___d 804 AGGCAATATCGGTTATCACCATGTCCATCATTTAAGTCCGAGGGTGCCGA 853
BSNT_03125___ 854 ACTATAAGCTT-GAAGTTGCTCATGAACATCACGAACCATTAAAAAACGT 902
|.|||.| ||| ||...|||.|||||.|||...||.|||.|..||||.||
BPUM_2588___d 854 ATTATCA-CTTAGAGCATGCACATGATCATAGTGAGCCACTTCAAAATGT 902
BSNT_03125___ 903 ACCGACAATCACCTTAAAAACAAGCCTGCAATCACTCGCGTTCCGTCTTT 952
|||.||.|||||.|||||||||||..|..|||||.|....||..|.||||
BPUM_2588___d 903 ACCAACCATCACTTTAAAAACAAGTATTGAATCAATGAAATTTAGACTTT 952
BSNT_03125___ 953 GGGATGAAGATAACAAA-CAGTTTGTGTCATTT---------CGGGC--T 990
||||||||||.|..||| || ||.||..|.||| | ||| |
BPUM_2588___d 953 GGGATGAAGACACGAAAGCA-TTCGTTACCTTTAAAGAAGCAC-GGCAAT 1000
BSNT_03125___ 991 ATAAAACATAT------ACCTGT-----AAGCCTTCCGCCTG----ATTC 1025
.|||.| |.|| |||||| ||| | ||||
BPUM_2588___d 1001 CTAAGA-AGATGCCCGCACCTGTCATTAAAG----------GAGACATTC 1039
BSNT_03125___ 1026 ACCAGAAAAA--CAGAAGCTGCGGAAGAATGCCTGA 1059
...||||||| ||.||
BPUM_2588___d 1040 TAAAGAAAAATGCATAA------------------- 1056
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