Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04296 and BPUM_2582
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04296___ytfJ.1.24716.seq
# -bsequence dna-align/BPUM_2582___ytfJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04296___ytfJ-BPUM_2582___ytfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04296___ytfJ-BPUM_2582___ytfJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04296___ytfJ
# 2: BPUM_2582___ytfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity: 340/476 (71.4%)
# Similarity: 340/476 (71.4%)
# Gaps: 43/476 ( 9.0%)
# Score: 1202.0
#
#
#=======================================
BSNT_04296___ 1 ATGGCAGACCATCCCATCCAAGGTTTAATGAAAACCGCAATGGAAAACTT 50
||||||||.|||||.|||||||||.|.|||||.||.||.|||||||||||
BPUM_2582___y 1 ATGGCAGATCATCCAATCCAAGGTCTGATGAAGACAGCGATGGAAAACTT 50
BSNT_04296___ 51 GAAGGAAATGATTGATGTTAACACCATCATCGGAGATCCAGTAGAAACGC 100
.||.||||||||.|||||.||.||.||||||||.||||||||.|||||.|
BPUM_2582___y 51 AAAAGAAATGATAGATGTGAATACAATCATCGGCGATCCAGTCGAAACCC 100
BSNT_04296___ 101 CTGATGGAAGTGTGATTTTAACTGTTTCTAAAGTTGGATTTGGATTCGCC 150
||||.||.|||||.||..|.|||||.||.||.|||||.||||||||.||.
BPUM_2582___y 101 CTGACGGCAGTGTCATCCTCACTGTATCGAAGGTTGGTTTTGGATTTGCA 150
BSNT_04296___ 151 GCAGGCGGAAGCGAGTTTGGCGGAAAGCCGGCCGAAAAGAAATCGGAAGA 200
||.|||||.||.||.|||..|||.|| |.|||||||| |.||.|
BPUM_2582___y 151 GCCGGCGGCAGTGAATTTAACGGGAA------CCAAAAGAAA--GAAAAA 192
BSNT_04296___ 201 C-----GATGAGACAAG-------AGAACAGAAACTTCCTTTCGGAGGCG 238
| ||||| .|||| |||||.||.|||.||.||.||.||.|
BPUM_2582___y 193 CGTTCTGATGA-TCAAGAACGAAAAGAACCGAGACTCCCATTTGGCGGGG 241
BSNT_04296___ 239 GAAGCGGGGGCGGTGTGTCCATTACGCCGATCGCGTTTTTAATTGTCGGA 288
|||||||.||.||||||||.|||||.||.|||||.||.||||||||||||
BPUM_2582___y 242 GAAGCGGCGGAGGTGTGTCTATTACACCAATCGCTTTCTTAATTGTCGGA 291
BSNT_04296___ 289 TCGACAGGCATCAGAATGCTTCATTTAGATGAAAATACCCATTTAATAGA 338
.|.|..|||.|..|||||||||||||.||||||.||||.|||.|..|.||
BPUM_2582___y 292 ACAAACGGCGTTCGAATGCTTCATTTGGATGAACATACACATCTGCTTGA 341
BSNT_04296___ 339 GAAAATTTTAGACGCAGCCCCTCAAACACTCGAACGCATCCAGCAAATGT 388
.|||||.||.||..|.||.||||||.||.|.|||||..|.|||||.||||
BPUM_2582___y 342 TAAAATATTGGATTCTGCTCCTCAAGCAATTGAACGTCTTCAGCACATGT 391
BSNT_04296___ 389 TCAAGAAAAAT-AAC--AAGAACCAAGGCCAGGGCCAAAATCAAAACCAA 435
|.|||||..|| ||| .|||||| |.||.|| |.|||.||
BPUM_2582___y 392 TTAAGAAGGATGAACGGGAGAACC---------GTCATAA--AGAACGAA 430
BSNT_04296___ 436 ATGAACAATATGAATTA-----TTAA 456
|||.|.||||..|| ||||
BPUM_2582___y 431 ---AACTAGATGACATAGACCTTTAA 453
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