Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04296 and BPUM_2582

See Amino acid alignment / Visit BSNT_04296 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_04296___ytfJ.1.24716.seq
#    -bsequence dna-align/BPUM_2582___ytfJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04296___ytfJ-BPUM_2582___ytfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04296___ytfJ-BPUM_2582___ytfJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04296___ytfJ
# 2: BPUM_2582___ytfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity:     340/476 (71.4%)
# Similarity:   340/476 (71.4%)
# Gaps:          43/476 ( 9.0%)
# Score: 1202.0
# 
#
#=======================================

BSNT_04296___      1 ATGGCAGACCATCCCATCCAAGGTTTAATGAAAACCGCAATGGAAAACTT     50
                     ||||||||.|||||.|||||||||.|.|||||.||.||.|||||||||||
BPUM_2582___y      1 ATGGCAGATCATCCAATCCAAGGTCTGATGAAGACAGCGATGGAAAACTT     50

BSNT_04296___     51 GAAGGAAATGATTGATGTTAACACCATCATCGGAGATCCAGTAGAAACGC    100
                     .||.||||||||.|||||.||.||.||||||||.||||||||.|||||.|
BPUM_2582___y     51 AAAAGAAATGATAGATGTGAATACAATCATCGGCGATCCAGTCGAAACCC    100

BSNT_04296___    101 CTGATGGAAGTGTGATTTTAACTGTTTCTAAAGTTGGATTTGGATTCGCC    150
                     ||||.||.|||||.||..|.|||||.||.||.|||||.||||||||.||.
BPUM_2582___y    101 CTGACGGCAGTGTCATCCTCACTGTATCGAAGGTTGGTTTTGGATTTGCA    150

BSNT_04296___    151 GCAGGCGGAAGCGAGTTTGGCGGAAAGCCGGCCGAAAAGAAATCGGAAGA    200
                     ||.|||||.||.||.|||..|||.||      |.||||||||  |.||.|
BPUM_2582___y    151 GCCGGCGGCAGTGAATTTAACGGGAA------CCAAAAGAAA--GAAAAA    192

BSNT_04296___    201 C-----GATGAGACAAG-------AGAACAGAAACTTCCTTTCGGAGGCG    238
                     |     ||||| .||||       |||||.||.|||.||.||.||.||.|
BPUM_2582___y    193 CGTTCTGATGA-TCAAGAACGAAAAGAACCGAGACTCCCATTTGGCGGGG    241

BSNT_04296___    239 GAAGCGGGGGCGGTGTGTCCATTACGCCGATCGCGTTTTTAATTGTCGGA    288
                     |||||||.||.||||||||.|||||.||.|||||.||.||||||||||||
BPUM_2582___y    242 GAAGCGGCGGAGGTGTGTCTATTACACCAATCGCTTTCTTAATTGTCGGA    291

BSNT_04296___    289 TCGACAGGCATCAGAATGCTTCATTTAGATGAAAATACCCATTTAATAGA    338
                     .|.|..|||.|..|||||||||||||.||||||.||||.|||.|..|.||
BPUM_2582___y    292 ACAAACGGCGTTCGAATGCTTCATTTGGATGAACATACACATCTGCTTGA    341

BSNT_04296___    339 GAAAATTTTAGACGCAGCCCCTCAAACACTCGAACGCATCCAGCAAATGT    388
                     .|||||.||.||..|.||.||||||.||.|.|||||..|.|||||.||||
BPUM_2582___y    342 TAAAATATTGGATTCTGCTCCTCAAGCAATTGAACGTCTTCAGCACATGT    391

BSNT_04296___    389 TCAAGAAAAAT-AAC--AAGAACCAAGGCCAGGGCCAAAATCAAAACCAA    435
                     |.|||||..|| |||  .||||||         |.||.||  |.|||.||
BPUM_2582___y    392 TTAAGAAGGATGAACGGGAGAACC---------GTCATAA--AGAACGAA    430

BSNT_04296___    436 ATGAACAATATGAATTA-----TTAA    456
                        |||.|.||||..||     ||||
BPUM_2582___y    431 ---AACTAGATGACATAGACCTTTAA    453


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