Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04288 and BPUM_2577
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04288___argG.1.24716.seq
# -bsequence dna-align/BPUM_2577___argG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04288___argG-BPUM_2577___argG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04288___argG-BPUM_2577___argG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04288___argG
# 2: BPUM_2577___argG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1236
# Identity: 939/1236 (76.0%)
# Similarity: 939/1236 (76.0%)
# Gaps: 48/1236 ( 3.9%)
# Score: 3551.5
#
#
#=======================================
BSNT_04288___ 1 ATGTCAGAACAGAAAAAAGTCGTATTAGCATACTCAGGAGGTCTTGATAC 50
||||||.||.|.||||||||||||||||||||.||.||||||||||||||
BPUM_2577___a 1 ATGTCACAAAATAAAAAAGTCGTATTAGCATATTCCGGAGGTCTTGATAC 50
BSNT_04288___ 51 TTCCGTCGCAATAAAATGGCTTCAGGAGCAAGGATATAATGTAATCGCCT 100
.||.||.|||.|.||||||.|.||.|||||||||||..|.||..|.||.|
BPUM_2577___a 51 CTCTGTTGCAGTTAAATGGTTACAAGAGCAAGGATACGAAGTCGTAGCTT 100
BSNT_04288___ 101 GCTGTCTGGATGTCGGTGAGGGCAAAGATTTGGCATTTGTTCAGCAGAAA 150
||||.||.||.||.|||||.||.|||||.||.|||||.|||||.||.|||
BPUM_2577___a 101 GCTGCCTAGACGTAGGTGAAGGAAAAGACTTAGCATTCGTTCAACAAAAA 150
BSNT_04288___ 151 GCGCTTGAAGTCGGCGCGACAA----ACTCCTACGTGATCGATGCAAAAG 196
||.|||.||||.||.|| | |.||.|||.||||.||.|||||||
BPUM_2577___a 151 GCACTTCAAGTAGGAGC----AGTTCAGTCTTACATGATTGACGCAAAAG 196
BSNT_04288___ 197 AAGAATTTGCACAGGACTACGCGCTTATTTCTTTGCAGGCCCACACGATG 246
|||||||.|||.||||.|..||.||.|.|.|.||.||.||.|||||||||
BPUM_2577___a 197 AAGAATTCGCAGAGGAATTTGCACTAACTGCCTTACAAGCACACACGATG 246
BSNT_04288___ 247 TATGAAGGAAAATACCCGCTTGTTTCGGCATTATCTCGACCGCTGATCGC 296
||||||||||||||.||||||||.||.|||||||||||.|||||.||.||
BPUM_2577___a 247 TATGAAGGAAAATATCCGCTTGTATCTGCATTATCTCGTCCGCTTATTGC 296
BSNT_04288___ 297 GAAAAAACTGGTTGAAATAGCGGAAAAAGAAGATGCACAGGCGATTGCCC 346
.||||||.|.||.|||.|.||.||.||||||.|||||...|||.||||.|
BPUM_2577___a 297 TAAAAAATTAGTGGAAGTCGCAGAGAAAGAAAATGCAGTAGCGGTTGCGC 346
BSNT_04288___ 347 ACGGATGCACAGGGAAAGGAAATGACCAGGTTCGTTTTGAAGTCTCCATT 396
|||||||.||.||.||||||||.|||||.||.|||||||||||.||||||
BPUM_2577___a 347 ACGGATGTACTGGTAAAGGAAACGACCAAGTCCGTTTTGAAGTATCCATT 396
BSNT_04288___ 397 AAATCATTAAACCCTGATCTTGAAGTCATCGCGCCGGTTCGCGAATGGCA 446
|||.|.||.||.||.||.||.|||||..|.||.||.||.||.||.|||.|
BPUM_2577___a 397 AAAGCTTTGAATCCAGACCTAGAAGTTCTTGCACCAGTGCGTGAGTGGAA 446
BSNT_04288___ 447 GTGGTCACGTGAAGAAGAAATTGAATATGCGGCT----AGCCGCGGCATT 492
.|||||.|||||.||||||||.||.||| ||| || |.|||.|||
BPUM_2577___a 447 ATGGTCTCGTGATGAAGAAATCGACTAT---GCTCAAAAG-CACGGTATT 492
BSNT_04288___ 493 CCGATTCCGATCAATCTT-GACAGCCCGTATTCTATCGACCAAAACCTCT 541
||.|||||.||.|| ||| ||||||||.|||||.||||||||||||||.|
BPUM_2577___a 493 CCAATTCCAATTAA-CTTAGACAGCCCATATTCAATCGACCAAAACCTTT 541
BSNT_04288___ 542 GGGGACGCGCCAATGAGTGCGGCATTTTAGAAGATCCATGGGCGGCGCCG 591
||||..|....||||||||||||||||||||||||||.|||||.||.|||
BPUM_2577___a 542 GGGGCAGAAGTAATGAGTGCGGCATTTTAGAAGATCCTTGGGCTGCACCG 591
BSNT_04288___ 592 CCAGAAGGTGCATACGATTTAACAGCTCCGCTGGAAAAAACGCCGGACAC 641
||||||||.||.||.||||||||..|.||.||.||||||||.||.|||||
BPUM_2577___a 592 CCAGAAGGAGCGTATGATTTAACGACACCACTTGAAAAAACACCTGACAC 641
BSNT_04288___ 642 GCCGGAAGTGATTGAAATTGCATTTG-------------AACAGGGCGTG 678
.||.|||.|.||||||||..|.|||| |||||
BPUM_2577___a 642 ACCTGAAATCATTGAAATCACGTTTGAAAAAGGAAAACCAACAG------ 685
BSNT_04288___ 679 CCTGTCTCCATTGACGGTGTTTCCTACTCGCTT-TCTGAGCTGATCTTGA 727
|.|||||.|||.||...||.|| ||| |||||.||.|||.|..
BPUM_2577___a 686 -------CTATTGATGGTATTCAGTATTC-CTTATCTGATCTCATCCTTC 727
BSNT_04288___ 728 AGCTGAATGAAATGGCGGGGGCGCACGGTGTCGGACGTATCGACCACGTG 777
|..|.||||||.|.||.||...|||.||.||.||..|.|||||.|||||.
BPUM_2577___a 728 ATTTAAATGAAGTCGCTGGTCAGCATGGGGTTGGTAGAATCGATCACGTT 777
BSNT_04288___ 778 GAAAACCGCCTCGTCGGCATTAAATCCCGGGAAGTATACGAATGCCCTGG 827
||||||||.||.||.||.||||||||.||.|||||.|||||||||||.||
BPUM_2577___a 778 GAAAACCGTCTTGTTGGTATTAAATCTCGTGAAGTGTACGAATGCCCAGG 827
BSNT_04288___ 828 TGCGATGACACTGATCAAAGCGCATAAAGAATTAGAAGATTTGACACTGG 877
|||..|.|||||..|.||||||||||||||..|.|||||.||.||.||.|
BPUM_2577___a 828 TGCTGTCACACTTCTAAAAGCGCATAAAGAGCTTGAAGACTTAACGCTAG 877
BSNT_04288___ 878 TGAAAGAGGTAGCCCACTTTAAACCGATCATCGAGCAAAAAATGTCAGAG 927
||||.||.||.||.||||||||.||.|||.|.||.|||||||||.|.||.
BPUM_2577___a 878 TGAAGGAAGTCGCACACTTTAAGCCAATCGTTGAACAAAAAATGGCTGAA 927
BSNT_04288___ 928 ATCATTTACAACGGCTTATGGTTCTCGCCGTTAAAAGATGCGCTGCACGC 977
.|.||.||||||||.|||||||||||.||..||||||..||.||..|.||
BPUM_2577___a 928 TTAATATACAACGGATTATGGTTCTCACCACTAAAAGGAGCACTAGATGC 977
BSNT_04288___ 978 TTTCTTAAAAGAAACGCAAAAGCATGTCACAGGCATTGTCCGCGTGAAGC 1027
|||||||.|||||||.|||.||.|.||.|||||..||||.||.|||||.|
BPUM_2577___a 978 TTTCTTACAAGAAACACAACAGAACGTAACAGGTGTTGTACGTGTGAAAC 1027
BSNT_04288___ 1028 TGTTTAAAGGCCATGCAATTGTAGAAGGACGTAAATCAGAATACTCTCTA 1077
|.||||||||||||||.|||||.|||||||||||||||..|||.||.||.
BPUM_2577___a 1028 TATTTAAAGGCCATGCCATTGTTGAAGGACGTAAATCACCATATTCACTT 1077
BSNT_04288___ 1078 TATGATGAAAAACTTGCAACATATACAAAAGACGATGCATTTGATCACCA 1127
||.||||||||.|||||||||||.||.||||..||||.|||||||||..|
BPUM_2577___a 1078 TACGATGAAAATCTTGCAACATACACTAAAGCAGATGAATTTGATCATGA 1127
BSNT_04288___ 1128 TGCAGCAATTGGATTTATCGAGCTTTGGGGACTT-CCGACAAAAGTGAAC 1176
||||||..|.||||||||..|.|||||||| ||| ||.||||||||.|||
BPUM_2577___a 1128 TGCAGCGGTAGGATTTATTAACCTTTGGGG-CTTACCAACAAAAGTAAAC 1176
BSNT_04288___ 1177 AGCATCGTGAAAAAGAAGGAGCAGATTAAAGCATGA 1212
|||||||||||.||.|||||||||.|||||||||||
BPUM_2577___a 1177 AGCATCGTGAATAAAAAGGAGCAGGTTAAAGCATGA 1212
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