Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04286 and BPUM_2576
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_04286___argH.1.24716.seq
# -bsequence dna-align/BPUM_2576___argH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04286___argH-BPUM_2576___argH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04286___argH-BPUM_2576___argH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04286___argH
# 2: BPUM_2576___argH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1404
# Identity: 1071/1404 (76.3%)
# Similarity: 1071/1404 (76.3%)
# Gaps: 48/1404 ( 3.4%)
# Score: 4011.0
#
#
#=======================================
BSNT_04286___ 1 ATGAAGAAGCTTTGGGGAGGCCGATTTCAAAAAACACCGGAAAAATGGGT 50
|||||.||||||||||||||||||||||||||||||||.|||||||||||
BPUM_2576___a 1 ATGAAAAAGCTTTGGGGAGGCCGATTTCAAAAAACACCAGAAAAATGGGT 50
BSNT_04286___ 51 CGACGAGTTCGGCGCGTCCATATCA-TTTGACCAACATTTAGTTGCTGAA 99
|||.|||||.||||||||||| ||| ||.|||.||||.|||||....|||
BPUM_2576___a 51 CGATGAGTTTGGCGCGTCCAT-TCACTTCGACAAACAATTAGTCAAAGAA 99
BSNT_04286___ 100 GACATTACAGGGTCTCTCGCACATGCTGCCATGCTGAAAAAATGCGGTAT 149
||..|.||.||.||.||.||.|||||....||||||||.|.|||||||||
BPUM_2576___a 100 GATCTGACCGGCTCCCTTGCTCATGCAAGTATGCTGAATACATGCGGTAT 149
BSNT_04286___ 150 TCT-GACAGCAGAAGAAGA----GCTGAAAATCCGAGAGGGCCTGAATAC 194
.|| ||| ||.||.|| ||| |..||...|||.||.|||||||.
BPUM_2576___a 150 CCTAGAC----GATGAGGAGGCCGCT-ACCATTAAAGATGGACTGAATAA 194
BSNT_04286___ 195 CCTTTTGCAAAAAGCAGAGGAGG--GAACATTGGAATTCTCAGTCGATTA 242
.||..||.||||.||.||||..| |||| |.|||||||||||.|||||
BPUM_2576___a 195 GCTCATGAAAAAGGCGGAGGCAGATGAAC--TCGAATTCTCAGTGGATTA 242
BSNT_04286___ 243 TGAGGATATTCATTTGAACATTGAGAAAATGCTCATTGACGAAATCGGTC 292
||||||.||||||||.|||.||||.||||||||||||||.||.||.||||
BPUM_2576___a 243 TGAGGACATTCATTTAAACCTTGAAAAAATGCTCATTGATGAGATTGGTC 292
BSNT_04286___ 293 CTCTTGGCGGCAAGCTGCATACCGGCAGAAGTCGGAATGACCAGGTGGCG 342
|.||||||||||||.||||.||.|..|||||.||||||||.|||||.||.
BPUM_2576___a 293 CGCTTGGCGGCAAGTTGCACACAGCGAGAAGCCGGAATGATCAGGTTGCA 342
BSNT_04286___ 343 ACTGACATGCATTTATACTTGAAGAATCATGTCGGCCACATCATCGAGCT 392
||.||.|||||||||||.|||||.||.||.||.|..||.|||||.||.||
BPUM_2576___a 343 ACCGATATGCATTTATATTTGAATAACCAAGTAGAGCATATCATTGAACT 392
BSNT_04286___ 393 GA----TTGAGGCATTCCAAAGTGCGCTGATTGAAAAGGCGGAAGCGAAC 438
|| || |.||.||||..|.|||..|.|||||.||.|||..|.||
BPUM_2576___a 393 GATCTCTT----CCTTTCAAACAGTGCTTGTGGAAAAAGCAGAACAGCAC 438
BSNT_04286___ 439 GTTGAAACGATTCTGCCGGGCTACACACATCTGCAGCGCGCCCAGCCGAT 488
||||||||||||.|.||.||.||.||.||..||||.||.||.|||||.||
BPUM_2576___a 439 GTTGAAACGATTTTTCCAGGATATACGCACTTGCAACGTGCACAGCCTAT 488
BSNT_04286___ 489 TTCATTCGCTCACCATCTGCTTGCGTATTTCTGGATGCTTGAGCGCGACA 538
|||.||.||.||.|||.||||.||.||||||||||||||.|||||.||||
BPUM_2576___a 489 TTCCTTTGCGCATCATATGCTCGCCTATTTCTGGATGCTAGAGCGTGACA 538
BSNT_04286___ 539 AGGAGCGTTTTCAGGATTCGATGAAGCGGATTAACAAATCTCCGCTCGGC 588
|.|.||||||.||.|||||..|||||||.||||||...|||||.||.||.
BPUM_2576___a 539 AAGCGCGTTTCCAAGATTCTTTGAAGCGAATTAACGTGTCTCCACTTGGA 588
BSNT_04286___ 589 TGCGGGGCGCTCGCGGGAACAACCTTCCCAATTGACCGTGATTATTCAGC 638
|||||.|||.|.||.|||||.||.|||||||||||.|||||.||..||||
BPUM_2576___a 589 TGCGGAGCGTTAGCAGGAACGACATTCCCAATTGATCGTGAATACACAGC 638
BSNT_04286___ 639 AGAACTGCTCGGCTTTGATGCCATTTATGAAAACAGCTTGGACGGCGTCA 688
|||.||.||.|||||||||...|||||.|||||.|||.|.||.|||||.|
BPUM_2576___a 639 AGAGCTACTTGGCTTTGATCATATTTACGAAAATAGCCTTGATGGCGTAA 688
BSNT_04286___ 689 GCGACAGAGACTTCATTTTGGAGTTTTTAAGCAACAGCAGTATGCTGATG 738
|.||..|.||.||||||||.|||||.||....||.||||||.|..|||||
BPUM_2576___a 689 GTGATCGGGATTTCATTTTAGAGTTCTTGTCTAATAGCAGTCTTGTGATG 738
BSNT_04286___ 739 ATGCACCTATCCCGTTTCTCTGAAGAAATCATTTTATGGTGCTCGCAGGA 788
||||||.||||.|||.|.|.|||.||||||||||||||||||||.||.||
BPUM_2576___a 739 ATGCACTTATCACGTCTTTGTGAGGAAATCATTTTATGGTGCTCACAAGA 788
BSNT_04286___ 789 GTTTAAATTCATCGAGCTTGACGATACGTACGCAACAGGAAGCAGCATGA 838
.||.||||||||.||||||||.||.||.||.||||||||.||||||||||
BPUM_2576___a 789 ATTCAAATTCATTGAGCTTGATGACACATATGCAACAGGCAGCAGCATGA 838
BSNT_04286___ 839 TGCCGCAAAAGAAAAACCCTGATATGGCGGAGCTGATCCGCGGCAAAACA 888
|||||||||||||||||||.||||||||.||..||||||||||.||||||
BPUM_2576___a 839 TGCCGCAAAAGAAAAACCCGGATATGGCAGAATTGATCCGCGGAAAAACA 888
BSNT_04286___ 889 GGACGCGTATACGGCGATATGATGGGTCTGTTTACGATCATGAAAGGACT 938
||.||.||.||.|||.|..|||||||.||..|.||.||||||||||| ||
BPUM_2576___a 889 GGCCGTGTGTATGGCAACCTGATGGGGCTTCTGACCATCATGAAAGG-CT 937
BSNT_04286___ 939 T-CCGCTCGCTTACAACAAAGATCTGCAGGAAGACAAAGAGGGCATGTTT 987
| |||||..|.||.||||||||..||||.|||||.|||||.|||||||||
BPUM_2576___a 938 TGCCGCTTACGTATAACAAAGACTTGCAAGAAGATAAAGAAGGCATGTTT 987
BSNT_04286___ 988 GACACGGTGAAAACGGTGGAAGGCAGCCTGCAAATCTTCACAGGCATGAT 1037
||.||.||.|||||..|.|..|||||||||||||||||||||||||||||
BPUM_2576___a 988 GATACAGTCAAAACCATTGCTGGCAGCCTGCAAATCTTCACAGGCATGAT 1037
BSNT_04286___ 1038 CCAAACAATGACTGTAAACAAAGACGTCATGAAGCAAGCGACAAAACAAG 1087
.|||||||||||.||.|||.||||.||||||||..||||.||||||.|||
BPUM_2576___a 1038 TCAAACAATGACAGTGAACGAAGATGTCATGAAAAAAGCAACAAAAGAAG 1087
BSNT_04286___ 1088 ACTTTTCAAATGCGACGGAACTGGCCGATTATTTAGCTAAAAAAGGAATG 1137
|.||.|||||||||||.|||.||||.||.||..|.||.||||||||.|||
BPUM_2576___a 1088 ATTTCTCAAATGCGACCGAAGTGGCAGACTACCTTGCGAAAAAAGGTATG 1137
BSNT_04286___ 1138 CCGTTCAGAGAAGCGCATGAAGTGGTCGGGAAACTTGTGTACACATGCAT 1187
||.|||.|.|||||.||.|||.|.||.||.||.||||||||.|||||.||
BPUM_2576___a 1138 CCATTCCGTGAAGCACACGAAATCGTTGGCAAGCTTGTGTATACATGTAT 1187
BSNT_04286___ 1188 CGAAAGAGGGATCTATTTAAGCGATATGCCGATTGGCGAGTTTCAGCAG- 1236
..||..|||.|||||.|||||.|||.|.||| ||.|.||..|||| |||
BPUM_2576___a 1188 TCAAGAAGGTATCTACTTAAGTGATCTTCCG-TTTGAGACATTCA-CAGA 1235
BSNT_04286___ 1237 -GCTAGCACACTATTCGAAGAAGATATTTACACTGTGTTAGACCCTTACT 1285
||.|||...||.||.||||||||.||||||||.||..|.||.||.||..
BPUM_2576___a 1236 AGCGAGCGATCTTTTTGAAGAAGACATTTACACCGTTCTTGATCCGTATG 1285
BSNT_04286___ 1286 ACGCAGTTGAAAAAAGAATGAGCGCCGGGGGCACCGGATTTAAACAGGTA 1335
..||.|||||||||||||..|||||.||.||.||.||||||||||| |
BPUM_2576___a 1286 TTGCTGTTGAAAAAAGAACAAGCGCAGGCGGAACTGGATTTAAACA---A 1332
BSNT_04286___ 1336 AAGCAG-GCGCTT--GAAAAAGCGAAAGCTTGCGTGGCAGCTGGAGTTTG 1382
|..||| .||||| ||||||||.|||||.|||.|||| |
BPUM_2576___a 1333 ATTCAGCTCGCTTTAGAAAAAGCAAAAGCCTGCCTGGC-----------G 1371
BSNT_04286___ 1383 TTAA 1386
|.|
BPUM_2576___a 1372 TAA- 1374
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