Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04276 and BPUM_2572
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_04276___ytoI.1.24716.seq
# -bsequence dna-align/BPUM_2572___ytoI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04276___ytoI-BPUM_2572___ytoI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04276___ytoI-BPUM_2572___ytoI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04276___ytoI
# 2: BPUM_2572___ytoI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1367
# Identity: 1017/1367 (74.4%)
# Similarity: 1017/1367 (74.4%)
# Gaps: 82/1367 ( 6.0%)
# Score: 3720.0
#
#
#=======================================
BSNT_04276___ 1 GTGAAAGGCTTGGCAACGAAGCATGAACAAATTTTAACGTATATCGATTC 50
|||||.||.||||||||||||||||||.|||||||.|||||
BPUM_2572___y 1 ---------TTGGCGACAAAGCATGAACAAATTTTATCGTATATTGATTC 41
BSNT_04276___ 51 ACTGCCTGTCGGTGAAAAAATTTCTGTCCGAAGAATTGCAAAGGAAATGA 100
|.|...||||||.||.||||||||||||||..|.|||||.||.|||||||
BPUM_2572___y 42 ATTAGATGTCGGAGAGAAAATTTCTGTCCGGCGTATTGCGAAAGAAATGA 91
BSNT_04276___ 101 AAGTAAGCGAAGGAACCGCGTACAGAGCGATCAAGGAAGCAGAGAATAAA 150
||||.||.|||||.|||||.|||.|.||.||||||||.||.||.||||||
BPUM_2572___y 92 AAGTGAGTGAAGGGACCGCTTACCGGGCCATCAAGGATGCCGAAAATAAA 141
BSNT_04276___ 151 GGGTTTGTCAGCACGATTGAACGTGTGGGCACAATCAGAATTGAACAAAA 200
||.||||||||.||.||||||||.||.||.||.||..||||||||||.||
BPUM_2572___y 142 GGATTTGTCAGTACCATTGAACGAGTTGGTACCATTCGAATTGAACAGAA 191
BSNT_04276___ 201 GAAAAAAGAGAACATTGAAAAGCTTACCTATGCAGAGGTTGTAAATGTTA 250
|||||||||.||.||||||||.||.||.||||||||.||.||.|||||.|
BPUM_2572___y 192 GAAAAAAGAAAATATTGAAAAACTGACATATGCAGAAGTGGTCAATGTCA 241
BSNT_04276___ 251 TAGACGGACAAGTGCTCGGAGGCAGGGCAGGGC-TCCATAAGACATTGAA 299
|.||||||||.|||||.|||||..|.|| |||| |.|||||.|||||.||
BPUM_2572___y 242 TTGACGGACAGGTGCTTGGAGGACGAGC-GGGCTTACATAAAACATTAAA 290
BSNT_04276___ 300 TAAATTCGTCATCGGCGCGATGGAGCTTGACGCGATGATGCGTTACACCG 349
.|||||.||||||||.||||||||||||||.|||||||||||.||.||.|
BPUM_2572___y 291 CAAATTTGTCATCGGAGCGATGGAGCTTGATGCGATGATGCGCTATACGG 340
BSNT_04276___ 350 CAGCGGGGAATCTTTTGATTGTCGGAAACAGAATCAATGCACACAGGCAG 399
||||.||.||.||..|.||||||||||||.||||||||||.|||||.||.
BPUM_2572___y 341 CAGCTGGCAACCTGCTAATTGTCGGAAACCGAATCAATGCCCACAGACAA 390
BSNT_04276___ 400 GCGCTTGAAGCGGGCGCGGCCGTATTGGTGACCGGGGGCTTT---AACAC 446
||..|.||.||.||.||.||.|||.||||.||.||.|| ||| ||||
BPUM_2572___y 391 GCATTAGAGGCAGGGGCAGCTGTACTGGTTACAGGCGG-TTTCTCAACA- 438
BSNT_04276___ 447 G--GATGACAGCATTGTGCAGCTGGCAGATGAGCTTGAACTGCCGATTTT 494
| |||||.|.|||| |||||.||||||.|||||||.||||||||.||
BPUM_2572___y 439 GATGATGAAATCATT---CAGCTCGCAGATAAGCTTGAGCTGCCGATCTT 485
BSNT_04276___ 495 ATCCACGAGCTATGACACCTTTACAGTTGCCGCTATGATTAACCGGGCAA 544
|||.||.|||||.||.||.|||||.||.||.||..|.|||||||||||.|
BPUM_2572___y 486 ATCGACAAGCTACGATACATTTACCGTAGCAGCACTCATTAACCGGGCCA 535
BSNT_04276___ 545 TTTATGACCAGCTGATCAAAAAAGAAATTGTTTTGGTGGAGGACATCCTA 594
|||||||.||.||.||.||||||||.||.||..|.|||||.||.||..||
BPUM_2572___y 536 TTTATGATCAACTCATAAAAAAAGAGATCGTGCTTGTGGAAGATATTTTA 585
BSNT_04276___ 595 ACACCTGCT-GACCGCACGGTATATCTTTCGCCTAAGGATAAACTTGAAA 643
||.|| |.| ||.||.|||||.|||.|.||.||..|.|||||.|||||||
BPUM_2572___y 586 ACGCC-GATAGAACGAACGGTGTATTTATCACCAGATGATAAGCTTGAAA 634
BSNT_04276___ 644 AATGGTATGAGAAAAATTTTGAAACGGGGCACGGACGCTTCCCGGTTGTC 693
||||||||||.||.||.|.||||||.||.|||||.|||||.|||||.|..
BPUM_2572___y 635 AATGGTATGAAAAGAACTATGAAACTGGCCACGGCCGCTTTCCGGTCGCA 684
BSNT_04276___ 694 GACGATCAAATGAAAATCCATGGCATTCTGACATCAAAAGATATTGCTGG 743
|||||.||||||||.||.||.||||||||.||.|||||.|||||.||.||
BPUM_2572___y 685 GACGACCAAATGAAGATTCACGGCATTCTCACCTCAAAGGATATCGCAGG 734
BSNT_04276___ 744 CCATGACCGAAATGCATCTATAGAAAAAGTCATGACCAAAAATCCCG-TC 792
.||||||||....||..|.||.|||||.||||||||.||||| |||| |.
BPUM_2572___y 735 GCATGACCGCTCCGCGCCGATTGAAAAGGTCATGACGAAAAA-CCCGCTG 783
BSNT_04276___ 793 ACGGTTATTGGGAAAACATCTGTCGCTTCAGCTGCGCAAATGATGGTATG 842
||.||.|||||.|||||.|||||.|||||.|||||.||||||||||||||
BPUM_2572___y 784 ACAGTCATTGGCAAAACCTCTGTTGCTTCTGCTGCTCAAATGATGGTATG 833
BSNT_04276___ 843 GGAAGGGATCGAAGTGCTTCCCGTCACTGACG-----GCCACCAAAAACT 887
||||||.||.||.|||||.||.||....|||| || .|||||
BPUM_2572___y 834 GGAAGGTATTGAGGTGCTGCCAGTTGTAGACGATTATGC-----GAAACT 878
BSNT_04276___ 888 CATCGGCATGATCAGCCGCCAAGACGTATTGAAAGCTCTTCAAATGATTC 937
.||.||||||||||||||.||.||||||.||||.||.||.||||||||||
BPUM_2572___y 879 GATTGGCATGATCAGCCGTCAGGACGTACTGAAGGCGCTCCAAATGATTC 928
BSNT_04276___ 938 AAAAGCAGCCGCAGGTCGGGGAGAAGCTTGATGATATCGTTTCAAGGGGG 987
||||||||||.||||||||.||.||.||.||||||.|.||.|||||.|||
BPUM_2572___y 929 AAAAGCAGCCACAGGTCGGAGAAAAACTGGATGATGTTGTCTCAAGAGGG 978
BSNT_04276___ 988 TTTAAAGATGAGGGTGA-TGATAAAGAAGATCAAA---------CGGTTT 1027
|||||||| || |||||.||||.|.|.|| |.||.|
BPUM_2572___y 979 TTTAAAGA-------GACTGATACAGAAAAGCCAAAGGCAGATGCCGTGT 1021
BSNT_04276___ 1028 ACGAGTATGAAGTCACGCCGCAAATGACAAATCAGCTTGGAACCATTTCT 1077
|..|.|||||.|||||.||.|||||||||||.|||||.||||.||||||.
BPUM_2572___y 1022 ATCAATATGAGGTCACACCACAAATGACAAACCAGCTCGGAAACATTTCA 1071
BSNT_04276___ 1078 TATGGCGTATTTACGACCATTTTGACGCAAGCGGCAAACCGATTTTT--- 1124
||||||||.||.|||...|||||.|...||.|.||.|||||.||.||
BPUM_2572___y 1072 TATGGCGTGTTCACGCAAATTTTAATTGAATCCGCCAACCGCTTCTTAAA 1121
BSNT_04276___ 1125 GCGCTC-GAAAAAACGCGGCGAACTCGTCATAGAGAGCATCACCATCTTC 1173
| .||| .|||||| ||.||.||..|..|.||.||..||.|..|||.|
BPUM_2572___y 1122 G-TCTCATAAAAAA---GGGGAGCTGATTGTCGAAAGTCTCTCTGTCTAC 1167
BSNT_04276___ 1174 TTTTTGAAGCCTGTGCAGATGGAAT--------CAGTCATCGAAGTCAAA 1215
||.||.||.||.||.||.||||||| ||| ||| |||.||||
BPUM_2572___y 1168 TTCTTAAAACCGGTTCAAATGGAATCCACGATACAG--ATC-AAGCCAAA 1214
BSNT_04276___ 1216 CCTCGCATCTTGGAGGCTGGCAGAAAGTTTGGGAAAATGGAAGTGGAAGT 1265
.||.||.||||..|||.|.||||||||.||..|.|||||||||||
BPUM_2572___y 1215 -----TATTTTAGAGGTAGGCCGCAAGTTTGGAAAGCTAGAAGTGGAAGT 1259
BSNT_04276___ 1266 GCA-CAGCCAAGGTC--ATATCGTGTCTAAAGCGATGCTGATGGTTCAGC 1312
..| ||.|.| || |||||||...||||||.|||||||||||.||||
BPUM_2572___y 1260 TTATCATCAA---TCGAATATCGTCGGTAAAGCCATGCTGATGGTGCAGC 1306
BSNT_04276___ 1313 TGATGGAAAGAAGCTAA 1329
|.|||||.|||.|.|||
BPUM_2572___y 1307 TCATGGAGAGAGGATAA 1323
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