Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04271 and BPUM_2568

See Amino acid alignment / Visit BSNT_04271 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_04271___ytrI.1.24716.seq
#    -bsequence dna-align/BPUM_2568___ytrI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04271___ytrI-BPUM_2568___ytrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04271___ytrI-BPUM_2568___ytrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04271___ytrI
# 2: BPUM_2568___ytrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity:     361/528 (68.4%)
# Similarity:   361/528 (68.4%)
# Gaps:          48/528 ( 9.1%)
# Score: 1143.5
# 
#
#=======================================

BSNT_04271___      1 ATGAGGGTCCCCCAACATTACAAAAAACCGGGATGGCAGCGTTTTTTCGC     50
                     ||||||||.||..|.|.|||||||...||.||.||||||||||||||.||
BPUM_2568___y      1 ATGAGGGTGCCGGAGCTTTACAAACGTCCAGGCTGGCAGCGTTTTTTTGC     50

BSNT_04271___     51 GGGAATGATGTGCGGGGCCGTAATCAGCTGGTTCTTTTTCCTGTTTACCT    100
                     |||.|||||||..||.||..|..|.||||||.||.|||||||.|||||.|
BPUM_2568___y     51 GGGGATGATGTTTGGCGCGATTGTGAGCTGGCTCATTTTCCTTTTTACAT    100

BSNT_04271___    101 ACGGAACATTCCAAGAGGAGCAGGTCAGCCTCAT---CGAAAAG-CAAAA    146
                     |||||||.||.||.||..|||||||.|    |||   .||.||| ||..|
BPUM_2568___y    101 ACGGAACCTTTCAGGAAAAGCAGGTGA----CATTGCTGAGAAGTCAGCA    146

BSNT_04271___    147 AGAGCATGT-AAAAGACTTGAACAATCAAATTTCGATCTATCAGGAAGAC    195
                     ..|.|||.| ||.||.| ||||..|.|||||..|..||||||..|||||.
BPUM_2568___y    147 GCACCATATGAACAGTC-TGAAAGAACAAATCACACTCTATCGAGAAGAT    195

BSNT_04271___    196 CTCCATAAACTGAATGAAGATAATAAAAGAAAA----CTGCTGATTCAAA    241
                     .|.|||||..|.|||||.|||||||    ||||    ||||||||.||||
BPUM_2568___y    196 TTGCATAAGTTAAATGAGGATAATA----AAAAGCGCCTGCTGATCCAAA    241

BSNT_04271___    242 GCGTCAG-CGTCAAATTGCTGAATGGAGATAAATATAAAATATCACAGCC    290
                     |||| || .|||.|..|..|.|||.|.||..||||||||||..||.||||
BPUM_2568___y    242 GCGT-AGATGTCCATCTCGTCAATCGTGAGCAATATAAAATCCCAGAGCC    290

BSNT_04271___    291 GGATAAAACG---AAATTCGAGGAGCATGTAAAGGATGATATTTCAGAGG    337
                     .|||   |||   |||||.||.||.||.||.|||||.|||||.|||||||
BPUM_2568___y    291 AGAT---ACGCTAAAATTTGAAGATCAGGTCAAGGAGGATATCTCAGAGG    337

BSNT_04271___    338 TGATTACAAAAGACATAGAGAGCGTCTATCAAACAAAGGATCTCTTGAAG    387
                     |.||||||||.||.||.||.||.||||||.||||||||||..|.||.||.
BPUM_2568___y    338 TTATTACAAAGGATATTGAAAGTGTCTATAAAACAAAGGAATTATTAAAA    387

BSNT_04271___    388 CGGACAATTGAAAATAAAGTCTATATGATCAAT----GAAAAAAAATA-C    432
                     ||.||..|.|||||.||||..||||    |.||    |||||...||| |
BPUM_2568___y    388 CGCACGGTCGAAAACAAAGAATATA----CCATTCGGGAAAAGGCATACC    433

BSNT_04271___    433 GAGGCAACCGTCAGAGAATTGATTATTTATACGAGGCTGACAGTGGAACT    482
                     |.|.||| .||.|.||||.|||..||||||||||.|||..|      |||
BPUM_2568___y    434 GCGCCAA-AGTGACAGAACTGACGATTTATACGAAGCTTTC------ACT    476

BSNT_04271___    483 TGAA------ATATCTTTCGCCACATAA    504
                     ||||      ||.||.||.||...||||
BPUM_2568___y    477 TGAAGTGCGCATTTCATTTGCTGAATAA    504


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