Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04264 and BPUM_2562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_04264___pfkA.1.24716.seq
# -bsequence dna-align/BPUM_2562___pfkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04264___pfkA-BPUM_2562___pfkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04264___pfkA-BPUM_2562___pfkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04264___pfkA
# 2: BPUM_2562___pfkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 961
# Identity: 785/961 (81.7%)
# Similarity: 785/961 (81.7%)
# Gaps: 2/961 ( 0.2%)
# Score: 3209.0
#
#
#=======================================
BSNT_04264___ 1 ATGAAACGTATAGGGGTATTAACGAGCGGCGGGGATTCCCCGGGAATGAA 50
|||||.||||||||.||.|||||||||||.|||||||||||.||||||||
BPUM_2562___p 1 ATGAAGCGTATAGGAGTTTTAACGAGCGGTGGGGATTCCCCAGGAATGAA 50
BSNT_04264___ 51 CGCAGCAGTTCGCGCAGTAGTCAGAAAAGCGATCTATCATGACGTTGAAG 100
.|||||.||.||||||||.||.||.|||||.||.||.|||.|.|||||||
BPUM_2562___p 51 TGCAGCTGTGCGCGCAGTTGTAAGGAAAGCAATTTACCATAATGTTGAAG 100
BSNT_04264___ 101 TTTACGGTATTTACAACGGATACGCGGGATTGATCAGCGGAAAGATTGAA 150
|||||||||||||.||.|||||..|.||..|.||.|.|||.||.|||||.
BPUM_2562___p 101 TTTACGGTATTTATAATGGATATTCAGGTCTAATTAACGGTAAAATTGAG 150
BSNT_04264___ 151 AAGCTTGAACTCGGATCAGTAGGCGATATTATACATCGTGGAGGAACTAA 200
||.||||||.|.||.|||||.||||||||.||.||||||||||||||.||
BPUM_2562___p 151 AAACTTGAAATAGGTTCAGTTGGCGATATCATTCATCGTGGAGGAACAAA 200
BSNT_04264___ 201 GCTTTATACGGCAAGATGTCCTGAATTCAAAACAGTTGAAGGCCGTGAAA 250
.|||||.|||||||||||.|||||||||||.|||||||||||.|||||||
BPUM_2562___p 201 ACTTTACACGGCAAGATGCCCTGAATTCAAGACAGTTGAAGGTCGTGAAA 250
BSNT_04264___ 251 AAGGGATAGAAAACTTGAAGAAGCTTGGTATTGAAGGCCTTGTTGTTATC 300
||||.||.||.|||||.||.||..|.|||||||||||.||||||||.|||
BPUM_2562___p 251 AAGGCATTGAGAACTTAAAAAAATTCGGTATTGAAGGACTTGTTGTGATC 300
BSNT_04264___ 301 GGCGGAGACGGTTCATATATGGGTGCGAAAAAATTAACGGAACACGGGTT 350
||||||||||||||||..|||||.|||||.|||||||||||.|.|||.||
BPUM_2562___p 301 GGCGGAGACGGTTCATTCATGGGAGCGAAGAAATTAACGGAGCTCGGTTT 350
BSNT_04264___ 351 TCCATGTGTAGGTGTACCGGGTACAATTGATAATGACATTCCGGGCACTG 400
|||||||||||||||.||.||||||||.||.||.||.||.||.||.||||
BPUM_2562___p 351 TCCATGTGTAGGTGTCCCAGGTACAATCGACAACGATATCCCAGGTACTG 400
BSNT_04264___ 401 ATTTTACAATCGGTTTCGATACAGCTTTAAATACAGTAATTGACGCAATT 450
||||.||.||.||.||.||||||||..|.||||||||.||||||||.|||
BPUM_2562___p 401 ATTTCACTATTGGCTTTGATACAGCACTGAATACAGTCATTGACGCCATT 450
BSNT_04264___ 451 GATAAGATTCGCGATACAGCGACTTCTCATGAACGTACATATGTAATCGA 500
|||||.|||||.||||||||.||.|||||||||||||||||.|||.|.||
BPUM_2562___p 451 GATAAAATTCGTGATACAGCCACATCTCATGAACGTACATACGTAGTGGA 500
BSNT_04264___ 501 AGTAATGGGCCGTCATGCCGGCGATATCGCATTGTGGGCCGGTCTTGCAG 550
|||||||||..|.|||||.||.|||||.||..|.|||.|.||||||||||
BPUM_2562___p 501 AGTAATGGGAAGACATGCTGGTGATATTGCTCTTTGGTCAGGTCTTGCAG 550
BSNT_04264___ 551 GGGGCGCGGAATCGATCTTAATCCCTGAGGCAGACTATGACATGCACGAA 600
|.||.||.||||||||.||.||.|||||.|||||||||||||||.|.|||
BPUM_2562___p 551 GCGGAGCCGAATCGATTTTGATTCCTGAAGCAGACTATGACATGGATGAA 600
BSNT_04264___ 601 ATCATTGCCCGCTTAAAACGCGGCCACGAACGCGGCAAGAAGCACAGTAT 650
||.|||||..|.||||.|.|.||.|||||.||||||||||||||||||||
BPUM_2562___p 601 ATTATTGCGAGATTAAGAAGAGGGCACGAGCGCGGCAAGAAGCACAGTAT 650
BSNT_04264___ 651 TATTATTGTTGCCGAAGGTGTAGGCAGCGGTGTTGAATTCGGGAAACGCA 700
.||.||.||.||.|||||.||||||||||||||||||||.||.||.||.|
BPUM_2562___p 651 CATCATCGTCGCAGAAGGCGTAGGCAGCGGTGTTGAATTTGGTAAGCGGA 700
BSNT_04264___ 701 TTGAAGAAGAAACAAATCTTGAAACTAGGGTATCTGTATTGGGCCATATC 750
|||||||.||.||||..||||||||..|.||||||||.||.||.|||||.
BPUM_2562___p 701 TTGAAGAGGAGACAAGCCTTGAAACCCGTGTATCTGTCTTAGGACATATT 750
BSNT_04264___ 751 CAGCGCGGAGGTTCTCCGAGTGCTGCTGACCGTGTGTTAGCAAGCCGTCT 800
|||||||||||||||||.|||||...||||||.||..|.|||||||||.|
BPUM_2562___p 751 CAGCGCGGAGGTTCTCCAAGTGCGTTTGACCGAGTACTCGCAAGCCGTTT 800
BSNT_04264___ 801 CGGCGCATATGCAGTTGAACTGCTGCTTGAAGGAAAAGGCGGACGCTGTG 850
.||.|||||.|||||.|||||.||.|||||||||||||||||||||||||
BPUM_2562___p 801 AGGAGCATACGCAGTAGAACTTCTTCTTGAAGGAAAAGGCGGACGCTGTG 850
BSNT_04264___ 851 TAGGTATACAAAACAATAAGCTTGTAGACCATGATATTATAGAAATACTT 900
|||||||.||||.|||..|.||.||..||||.||||||.||||.|| |||
BPUM_2562___p 851 TAGGTATTCAAAGCAACGAACTCGTTCACCACGATATTTTAGATAT-CTT 899
BSNT_04264___ 901 -GAGACAAAACACACAGTTGAGCAAAACATGTATCAGCTTTCAAAAGAAC 949
||.|.||||||.|||||.||.|||||.|||||.|..||||||.||||.|
BPUM_2562___p 900 AGATAAAAAACATACAGTCGATCAAAATATGTACCGACTTTCACAAGAGC 949
BSNT_04264___ 950 TGTCTATCTAA 960
|.|||||.|||
BPUM_2562___p 950 TCTCTATATAA 960
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