Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04263 and BPUM_2561
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_04263___pyk.1.24716.seq
# -bsequence dna-align/BPUM_2561___pyk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04263___pyk-BPUM_2561___pyk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04263___pyk-BPUM_2561___pyk.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04263___pyk
# 2: BPUM_2561___pyk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1803
# Identity: 1342/1803 (74.4%)
# Similarity: 1342/1803 (74.4%)
# Gaps: 87/1803 ( 4.8%)
# Score: 4800.0
#
#
#=======================================
BSNT_04263___ 1 ATGAGAAAAACTAAAATTGTTTGTACCATCGGTCCGGCAAGTGAAAGTAT 50
||||||||.||.|||||.||||||||.||||||||.||||||||||..||
BPUM_2561___p 1 ATGAGAAAGACAAAAATCGTTTGTACAATCGGTCCAGCAAGTGAAACCAT 50
BSNT_04263___ 51 TGAAATGCTTACGAAATTAATGGAGTCAGGAATGAACGTGGCTCGATTAA 100
|||||.|||.||..||||.||.||..||||||||||.||.||..||.|||
BPUM_2561___p 51 TGAAAAGCTGACTGAATTGATTGAAGCAGGAATGAATGTAGCCAGACTAA 100
BSNT_04263___ 101 ACTTTTCTCACGGAGATTTTGAGGAACACGGTGCAAGAATTAAAAATATC 150
||||.|||||.|||||||||||.||.||.||||||.|.||..||||.||.
BPUM_2561___p 101 ACTTCTCTCATGGAGATTTTGAAGAGCATGGTGCACGCATCGAAAACATT 150
BSNT_04263___ 151 CGCGAAGCAAGTAAAAAACTTGGCAAGAACGTTGGAATTCTGCTTGATAC 200
||..|||||.|.||||.|.|.||||||.||.|||..||.||.||||||||
BPUM_2561___p 151 CGTAAAGCAGGGAAAACATTAGGCAAGGACATTGCGATCCTTCTTGATAC 200
BSNT_04263___ 201 AAAAGGTCCTGAAATCCGCACACATACAATGGAAAACGGCGGTATTGAGC 250
|||||||||.||.|||||.||||.||||.|.|||||||||...|||||||
BPUM_2561___p 201 AAAAGGTCCAGAGATCCGTACACGTACAGTTGAAAACGGCTCAATTGAGC 250
BSNT_04263___ 251 TTGAAACAGGCAAAGAGCTCAT--TATTTCAATGGACGAGGTTGTAGGAA 298
|.|...|.||...|||.||||| ||..| |||||.||..||||.||||
BPUM_2561___p 251 TAGTCGCTGGTGCAGATCTCATCGTAAGT--ATGGAAGACATTGTTGGAA 298
BSNT_04263___ 299 CAACAGATAAAATTTCAGTGACATATGAAGGTTTAGTCCATGACGTTGAA 348
..||.||.||||||...|||||||||||||.|||..|.|||||.||.|||
BPUM_2561___p 299 ATACGGAAAAAATTAGTGTGACATATGAAGATTTGATTCATGATGTAGAA 348
BSNT_04263___ 349 CAAGGTTCAACGATTCTGTTAGATGACGGCCTTATCGGTCTTGAGGT--- 395
...||||||||.||.||.||||||||.||.||.||.|||.|.||.||
BPUM_2561___p 349 GTGGGTTCAACAATCCTTTTAGATGATGGTCTCATTGGTTTAGAAGTGAA 398
BSNT_04263___ 396 ---ACTTGATGTAGATGCCGCTAAACGCGAAATCAAAACAAAAGT-ATTA 441
|||..|..|.||| |..||| ||||||...|||||.|| ||.|
BPUM_2561___p 399 AGAACTGAACATGGAT---GAGAAA---GAAATCGTCACAAAGGTCATGA 442
BSNT_04263___ 442 A-ACAACGGAACACTCAAAAATAAAAAAGGTGTTAACGTACCGGGCGTAA 490
| ||| ||.||.||||||||.|||||||||||.||||||||.||.||||
BPUM_2561___p 443 ATACA--GGCACGCTCAAAAACAAAAAAGGTGTAAACGTACCAGGTGTAA 490
BSNT_04263___ 491 GTGTCAATCTT-CCGGGTATTACTGAAAAGGATGCGCGA-GACATCGTTT 538
||||.|| ||| ||.||||||||.|||||.||||| |.| ||.||..|.|
BPUM_2561___p 491 GTGTGAA-CTTGCCAGGTATTACAGAAAAAGATGC-CAATGATATTCTGT 538
BSNT_04263___ 539 TCGGTATTGAGCAAGGAGTAGACTTCATCGCACCATCTTTCATTCGACGT 588
||||.|||||.|||||.||.||.|||||||||.|.|||||..|..||||.
BPUM_2561___p 539 TCGGAATTGAACAAGGCGTTGATTTCATCGCAGCTTCTTTTGTGAGACGA 588
BSNT_04263___ 589 TCTACGGATGTGCTCGAAATCCGTGAGCTTCTTGAAGAGCACAACGCTCA 638
.||.|.|||||.||.|||||.|||||||||||||||.||.|.||.||...
BPUM_2561___p 589 GCTTCTGATGTTCTTGAAATTCGTGAGCTTCTTGAAAAGAATAATGCGGC 638
BSNT_04263___ 639 GGAAATTCAAATCATCCCTAAAATCGAAAACCAAGAGGGCGTTGACAACA 688
.||.|||||||||||||||||.||.||||||||||||||.|||||.||||
BPUM_2561___p 639 TGACATTCAAATCATCCCTAAGATTGAAAACCAAGAGGGTGTTGATAACA 688
BSNT_04263___ 689 TCGATGCGATTCTCGAAGTGTCTGACGGCTTAATGGTTGCACGCGGAGA- 737
|.||||..||.||.||.||.||.|||||.||.||||||||.||.|||||
BPUM_2561___p 689 TTGATGAAATCCTTGAGGTATCAGACGGTTTGATGGTTGCGCGTGGAGAT 738
BSNT_04263___ 738 CTTAGGTGTGGAAATTCCAGCTGAAGAAGTGCCGCTTGTGCAAAAAGAAC 787
||| |||||.||.||.|||||.||||||||.||||||||.||||||...|
BPUM_2561___p 739 CTT-GGTGTAGAGATCCCAGCAGAAGAAGTACCGCTTGTTCAAAAAATGC 787
BSNT_04263___ 788 TGATCAAAAAATGCAA-CGCGCTGGGCAAACCTGTTATTACAGCAACACA 836
|.|||||||||||||| ||| .|||||||||||||.||.||||||||.||
BPUM_2561___p 788 TCATCAAAAAATGCAATCGC-TTGGGCAAACCTGTCATCACAGCAACCCA 836
BSNT_04263___ 837 AATGCTTGACAGCATGCAGCGCAACCCGCGTCCGACTCGTGCGGAAGCAA 886
|||||||||.|||||||||||.||.||.|||||.||||||||||||||||
BPUM_2561___p 837 AATGCTTGATAGCATGCAGCGTAATCCTCGTCCAACTCGTGCGGAAGCAA 886
BSNT_04263___ 887 GTGACGTTGCAAACGCGATCTTCGACGGAACAGATGCGATCATGCTTTCT 936
|||||||.|||||.||.||.||.||.||.|||||||||||.|||||||||
BPUM_2561___p 887 GTGACGTGGCAAATGCTATTTTTGATGGCACAGATGCGATTATGCTTTCT 936
BSNT_04263___ 937 GGTGAAACTGCTGCCGGAAGTTATCCGGTTGAAGCAGTTCAAACAATGCA 986
||||||||.||.||.||||..|||||.||.|||||.||.|||||||||||
BPUM_2561___p 937 GGTGAAACAGCAGCAGGAACGTATCCAGTGGAAGCTGTACAAACAATGCA 986
BSNT_04263___ 987 TAACATCGCGTCCCGTTCTGAAGAAGCGTTAAATTATAAAGAAATTCTCT 1036
||||||.||.||.|||||.|||||.||..|.||.|||||||..|||||.|
BPUM_2561___p 987 TAACATTGCATCACGTTCAGAAGATGCACTCAACTATAAAGCCATTCTTT 1036
BSNT_04263___ 1037 CAAAACGCAGA---GATCAAGTTGGCATGACA--ATTACAGACGCAATTG 1081
| .|||||| ||..||||.| |||.|| |||||.||.||.||||
BPUM_2561___p 1037 C---TCGCAGAAGCGAAGAAGTAG--ATGTCAGCATTACTGATGCCATTG 1081
BSNT_04263___ 1082 GACAATCTGTCGCACATACGGCGATTAACCTGAATGCTGCTGCGATCGTA 1131
|.||||||||.||||||||.|||||.||.||..|.|.|||.|||||.||.
BPUM_2561___p 1082 GTCAATCTGTTGCACATACAGCGATGAAGCTTGACGTTGCAGCGATTGTG 1131
BSNT_04263___ 1132 ACGCCGACAGAAAGCGGCCATACAGCACGTATGATTGCAAAATACCGTCC 1181
||.||.||.||||||||.||||||||..|.||||||.||||||||.|.||
BPUM_2561___p 1132 ACACCTACGGAAAGCGGTCATACAGCGAGAATGATTTCAAAATACAGACC 1181
BSNT_04263___ 1182 GCAGGCTCCGATTGTTGCGGTTACTGTAAATGACTCTATTTCCAGAAAGC 1231
..|.||.||.||.||.||.||.||.|.|||.||.||..||.|.|||||||
BPUM_2561___p 1182 AAAAGCACCAATCGTAGCAGTCACAGCAAACGAATCAGTTGCAAGAAAGC 1231
BSNT_04263___ 1232 TTGCCCTCGTATCTGGCGTATTCGCGGAAAGCGG--CCAAAATGCGAGCT 1279
|..|.||.||||..||.|||||.||..|.||.|| |.|||| |||..|
BPUM_2561___p 1232 TATCTCTTGTATTCGGTGTATTTGCAAAGAGTGGATCAAAAA--CGACGT 1279
BSNT_04263___ 1280 CAACAGATGAGATGCTTGAGGATGCTGTCCAAAAATC-ATTG-AACAG-- 1325
|.||.|||||.|||||||||.||||.||..|.||||| |||| |||||
BPUM_2561___p 1280 CTACGGATGAAATGCTTGAGAATGCAGTTGAGAAATCGATTGAAACAGGC 1329
BSNT_04263___ 1326 --CGGAATTGTAAAACACGGCGATCTTATCGTTATTACAGCAGG-----C 1368
| ||.|.|||.||||||.|.||||||||||||||.|| |
BPUM_2561___p 1330 TAC------GTGAGACATGGCGATTTAATCGTTATTACAGCTGGTGTGCC 1373
BSNT_04263___ 1369 ACTGTCGGTGAGTCCGGCACTACGAACTTAATGAAGGTTCATACTGTCGG 1418
| ||.|||||..|.||.||.||.|||||||||||.||..||..||||||
BPUM_2561___p 1374 A--GTTGGTGAAACAGGTACAACAAACTTAATGAAAGTGTATGTTGTCGG 1421
BSNT_04263___ 1419 CGATATCGTCGCTAAAGGCCAAGGCATTGGACGCAAATCAGCTTACGGTC 1468
.||.|||.|.||.|||||.|||||.|||||.||.|||||.||.|..||.|
BPUM_2561___p 1422 TGACATCATTGCGAAAGGTCAAGGAATTGGCCGTAAATCTGCATTTGGAC 1471
BSNT_04263___ 1469 CGGTTGTCGTTGCACAAAATGCAAAAGAAGCTGAGCAAAAAATG-ACTGA 1517
||||||||.|||||||||..|.|||||||||.||..|||||||| || ||
BPUM_2561___p 1472 CGGTTGTCATTGCACAAAGCGGAAAAGAAGCAGAAGAAAAAATGTAC-GA 1520
BSNT_04263___ 1518 CGGTGCGGTACTTGTTACCAAAAGCACTGACCGTGATATGAT---TGCAT 1564
.||.|||.|.|||||..|.||..|.||.||.||||||||||| |||.|
BPUM_2561___p 1521 TGGGGCGATTCTTGTCGCAAACTGTACAGATCGTGATATGATGAGTGCTT 1570
BSNT_04263___ 1565 CCCTTGAAAAAGCGTCTGCTCTT-ATTACAGAAGAAGGCGGTTTGACTAG 1613
|.||.|||||.||||| ||| ||.||.|||||||||||.||.||.||
BPUM_2561___p 1571 ---TAGAGAAAGCATCTGC-CTTGATCACTGAAGAAGGCGGCTTAACAAG 1616
BSNT_04263___ 1614 CCATGCGGCGGTAGTCGGATTAAGCCTTGGCATCCCGGTTATCGTGGGTC 1663
||||||.||.||.||.|||.|.|||||||||||.||.||.||.||.||||
BPUM_2561___p 1617 CCATGCAGCAGTCGTTGGACTCAGCCTTGGCATTCCAGTGATTGTAGGTC 1666
BSNT_04263___ 1664 ----TGGAAAATGCGACATCTATTTTGACAGATGGCCAGGATATTACAGT 1709
|||| ||.|||.|..|..|.|.|||.|||.|.||.||||||||
BPUM_2561___p 1667 TTGATGGA----GCTACAACACTCCTAAAAGAAGGCGAAGAAATTACAGT 1712
BSNT_04263___ 1710 TGACGCTTCCAG-AGGCGCAG---TCTATCAAGGCCGTGCGAGCGTTCTT 1755
.|| |||.| |.|||.|| ||||..||||||||||.|||||.||.
BPUM_2561___p 1713 AGA----TCCGGCACGCGGAGCGATCTACAAAGGCCGTGCAAGCGTCCTA 1758
BSNT_04263___ 1756 TAA 1758
|||
BPUM_2561___p 1759 TAA 1761
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