Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04256 and BPUM_2558

See Amino acid alignment / Visit BSNT_04256 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_04256___ytwI.1.24716.seq
#    -bsequence dna-align/BPUM_2558___ytwI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04256___ytwI-BPUM_2558___ytwI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04256___ytwI-BPUM_2558___ytwI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04256___ytwI
# 2: BPUM_2558___ytwI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity:     348/479 (72.7%)
# Similarity:   348/479 (72.7%)
# Gaps:          28/479 ( 5.8%)
# Score: 1201.5
# 
#
#=======================================

BSNT_04256___      1 GTGTTTACACAAGCGAATTTATTTT---TAATTTTACTCTTGGCTATCGC     47
                     .|||||||.|||||.||||||||||   |..||||||||   |.|||.||
BPUM_2558___y      1 ATGTTTACTCAAGCAAATTTATTTTTGGTTCTTTTACTC---GTTATTGC     47

BSNT_04256___     48 ACTTATCGCAAAAAACCAATCATTGCTCTTTGCTGTATCCGTCCTT-TTG     96
                     ||||||.|||||||||.|.|||||..||||.||.||.||.||.||| |||
BPUM_2558___y     48 ACTTATTGCAAAAAACAATTCATTAATCTTAGCGGTTTCTGTGCTTATTG     97

BSNT_04256___     97 ATCATCAAAATCCTAGGGCTTGATCAGAA-ATTATTTCCGACCA----TC    141
                      ..||.||..|..|.||..|.|||||.|| ||  ||||   |||    |.
BPUM_2558___y     98 -GGATTAAGCTGATTGGTTTGGATCAAAAGAT--TTTC---CCAGTTCTT    141

BSNT_04256___    142 CAGTCAAAAGGCATTAACTGGGGTGTGACCATTATTACCATCGCCGTTCT    191
                     ||.||.||||||||.||.|||||.||.|||.|||||||.||.||.||.||
BPUM_2558___y    142 CAATCGAAAGGCATCAATTGGGGAGTCACCGTTATTACTATTGCTGTACT    191

BSNT_04256___    192 TGTCCCGATTGCCACGGGAGAAATCGGATTTAAGCAGCTTGGAGAAGCAA    241
                     ||||||.|||||.||.|||||.||.||||||||.|||||||||||||||.
BPUM_2558___y    192 TGTCCCTATTGCAACAGGAGACATTGGATTTAAACAGCTTGGAGAAGCAG    241

BSNT_04256___    242 TGCGGTCTTCCTACGCATGGATCGCCCTTGGAGCGGGGATCGCAGTGGCG    291
                     ||...|||||.||.||.|||||.||.|||||||||||.||...|||.||.
BPUM_2558___y    242 TGAAATCTTCTTATGCTTGGATTGCACTTGGAGCGGGTATATTAGTAGCA    291

BSNT_04256___    292 CTGATTGCAAAAAACGGCCTGGCCCTGCTTGAAAATGATCCGCATATTAC    341
                     .|.||||||||||||||..|.|..||.||.||.||||||||||||||.||
BPUM_2558___y    292 TTAATTGCAAAAAACGGTATTGTGCTACTCGAGAATGATCCGCATATCAC    341

BSNT_04256___    342 AACTGCTCTCGTGATCGGGACCATTCTTGCGGTTGC-GCTT-TTTGGAGG    389
                     .||.||.||.|||.|||||||.|||.|.||.||  | |||| ||...|||
BPUM_2558___y    342 GACAGCGCTTGTGTTCGGGACGATTTTGGCAGT--CAGCTTATTCAAAGG    389

BSNT_04256___    390 AGTTGCGGTGGGACCGCTGATCGGAGCGGGGATTGCTTATTTAGCCATGC    439
                     .||.||.||.||.||||||||.|||||.||.|||||||||||.||.||||
BPUM_2558___y    390 TGTAGCTGTCGGTCCGCTGATTGGAGCAGGAATTGCTTATTTGGCGATGC    439

BSNT_04256___    440 AGATCGTAAAACTGTTCA---CTTCATAA    465
                     ||...||.|||.|.||||   .||.|   
BPUM_2558___y    440 AGGCTGTGAAATTTTTCAGCGGTTGA---    465


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