Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04253 and BPUM_2555

See Amino acid alignment / Visit BSNT_04253 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_04253___icd.1.24716.seq
#    -bsequence dna-align/BPUM_2555___icd.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04253___icd-BPUM_2555___icd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04253___icd-BPUM_2555___icd.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04253___icd
# 2: BPUM_2555___icd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1277
# Identity:    1024/1277 (80.2%)
# Similarity:  1024/1277 (80.2%)
# Gaps:          10/1277 ( 0.8%)
# Score: 4116.5
# 
#
#=======================================

BSNT_04253___      1 GTGGCACAAGGTGAAAAAATTACAGTCTCTAACGGAGTATTAAACGTACC     50
                     .||.|||||||.||||||||||||||..||..|||.|||||.||.|||||
BPUM_2555___i      1 TTGTCACAAGGCGAAAAAATTACAGTTACTGGCGGCGTATTGAATGTACC     50

BSNT_04253___     51 AAACAACCCGATTATCCCATTTATCGAAGGAGACGGAACTGGTCCTGATA    100
                     |||.||.||.||||||||.|||||||||||.|||||||..||||||||.|
BPUM_2555___i     51 AAATAATCCAATTATCCCGTTTATCGAAGGGGACGGAATCGGTCCTGACA    100

BSNT_04253___    101 TTTGGAACGCGGCTTCGAAG-GTTTTAGAAGCAGCAGTAGAAAAAGCATA    149
                     |||||||.||.||.|| ||| ||..|.||||||||.||||||||||||||
BPUM_2555___i    101 TTTGGAAAGCAGCATC-AAGAGTACTTGAAGCAGCTGTAGAAAAAGCATA    149

BSNT_04253___    150 CAAAGGCGAAAAGAAAATTACATGGAAAGAAGTTTACGCCGGAGAAAAGG    199
                     .|||||.||||||.||||.||.|||||||||||.||.|||||.||.||.|
BPUM_2555___i    150 TAAAGGTGAAAAGCAAATCACTTGGAAAGAAGTATATGCCGGTGAGAAAG    199

BSNT_04253___    200 CTTATAATAAAACAGGTGAGTGGCTCCCTGCTGAAACATTAGATGTGATC    249
                     ||||.||||||||.|||||.|||||.||||...|||||.||||.|..||.
BPUM_2555___i    200 CTTACAATAAAACTGGTGAATGGCTTCCTGAGCAAACACTAGAAGACATT    249

BSNT_04253___    250 CGCGAATATTTCATCGCGATTAAAGGCCCGTTAACGACACCTGTCGGCGG    299
                     ||.|||||.||.|||||.||.|||||.||..||||.|||||..|||||||
BPUM_2555___i    250 CGTGAATACTTAATCGCAATCAAAGGACCACTAACAACACCAATCGGCGG    299

BSNT_04253___    300 CGGTATCCGTTCTTTGAACGTAGCGCTCAGACAAGAGCTTGACCTATTCG    349
                     .||.||||||||.||.|||||.||.||.||||||||||||||.||||||.
BPUM_2555___i    300 AGGAATCCGTTCATTAAACGTGGCACTTAGACAAGAGCTTGATCTATTCA    349

BSNT_04253___    350 TCTGCTTAAGACCTGTAAGATACTTTACTGGAGTGCCGTCACCGGTAAAA    399
                     ..||||||.|.||.||..|.|..||.|..||.||.|||||.||.||.|||
BPUM_2555___i    350 CATGCTTACGTCCAGTTCGCTGGTTCAAAGGCGTACCGTCTCCTGTGAAA    399

BSNT_04253___    400 CGCCCTGAAGATACTGATATGGTCATCTTCCGTGAAAATACAGAAGATAT    449
                     ||.||.|||||.||.||||||||||||||||||||.||||||||||||||
BPUM_2555___i    400 CGTCCAGAAGACACAGATATGGTCATCTTCCGTGAGAATACAGAAGATAT    449

BSNT_04253___    450 TTACGCAGGCATCGAGTATGCAAAAGGCTCTGAAGAAGTGCAAAAGCTTA    499
                     .||.||.||.|||||||||||||||||.||.||.||||||.|.|||.|.|
BPUM_2555___i    450 CTATGCTGGTATCGAGTATGCAAAAGGATCAGACGAAGTGAAGAAGTTAA    499

BSNT_04253___    500 TCAGCTTCCTTCAAAATGAGTTAAACGTCAATAAAATCCGTTTCCCTGAG    549
                     |...||||.|..||||.||.|||...||.||.||||||||||||||.||.
BPUM_2555___i    500 TTGACTTCTTGAAAAACGAATTAGGTGTAAACAAAATCCGTTTCCCAGAA    549

BSNT_04253___    550 ACATCAGGTATCGGCATTAAGCCTGTTTCAGAAGAAGGAACAAGCCGCTT    599
                     ||||||||||||||.||.|||||.|||||.|||||||||||....|||.|
BPUM_2555___i    550 ACATCAGGTATCGGAATCAAGCCAGTTTCTGAAGAAGGAACTTCTCGCCT    599

BSNT_04253___    600 GGTCAGAGCTGCCATTGATTATGCGATCGAGCATGGCCGCAAATCTGTAA    649
                     .||.|||||.||.||..|.|||||.|||||.||.|||||.||.|||||.|
BPUM_2555___i    600 TGTTAGAGCGGCTATCCAATATGCAATCGACCAAGGCCGTAAGTCTGTGA    649

BSNT_04253___    650 CGCTTGTTCACAAAGGAAACATCATGAAGTTCACAGAAGGCGCGTTCAAA    699
                     ||||||||||||||||||||||||||||.||.||||||||.||.||||||
BPUM_2555___i    650 CGCTTGTTCACAAAGGAAACATCATGAAATTTACAGAAGGAGCCTTCAAA    699

BSNT_04253___    700 AACTGGGGCTATGAACTTGCTGAAAAAGAATACGGAGATAAAGTCTTCAC    749
                     |||||||||||.|||.|.|||||||||||.|..||.||.||.|||||.||
BPUM_2555___i    700 AACTGGGGCTACGAAGTGGCTGAAAAAGAGTTTGGCGACAAGGTCTTTAC    749

BSNT_04253___    750 ATGGGCTCAATATGACCGCATTGCTGAAGAAGAAGGAAAAGACGCTGCCA    799
                     ||||||.||||||||.||.||||..|||.||||.||||||||.||.||.|
BPUM_2555___i    750 ATGGGCACAATATGATCGTATTGTAGAACAAGATGGAAAAGATGCGGCAA    799

BSNT_04253___    800 ACAAAGCGCAAAGCGAAGCGGAAGCAGCAGGAAAAATCATTATCAAAGAC    849
                     |||||||||||||.|||||.|||||.||.||.|||||.|||.||||||||
BPUM_2555___i    800 ACAAAGCGCAAAGTGAAGCAGAAGCTGCTGGCAAAATTATTGTCAAAGAC    849

BSNT_04253___    850 AGCATTGCTGACATTTTCCTTCAGCAGATCTTAACGCGTCCAAACGAGTT    899
                     ||||||||.||.|||||||||||.||.|||.||||.|||||....|||||
BPUM_2555___i    850 AGCATTGCAGATATTTTCCTTCAACAAATCCTAACTCGTCCGGCTGAGTT    899

BSNT_04253___    900 TGATGTCGTTGCGACAATGAACTTGAACGGAGATTACATTTCTGATGCTC    949
                     .|||||.||.||.|||||||||||.||||||||||||||.||||||||||
BPUM_2555___i    900 CGATGTTGTGGCAACAATGAACTTAAACGGAGATTACATCTCTGATGCTC    949

BSNT_04253___    950 TTGCTGCGCAAGTCGGCGGAATCGGCATTGCTCCTGGAGCGAACATCAAC    999
                     ||||.||.|||||.||.|||||.||.||.||.||.||.||||||||||||
BPUM_2555___i    950 TTGCAGCACAAGTTGGTGGAATTGGTATCGCACCAGGTGCGAACATCAAC    999

BSNT_04253___   1000 TACGAAACAGGACATGCGATTTTCGAGGCGACGCACGGAACGGCTCCTAA   1049
                     ||||||||||||||.||.|||||.||.|||||.||||||||.||.|||||
BPUM_2555___i   1000 TACGAAACAGGACACGCTATTTTTGAAGCGACTCACGGAACAGCACCTAA   1049

BSNT_04253___   1050 ATATGCAGGCCTTGATAAAGTAAACCCATCTTCAGTTATTCTTTCAGGCG   1099
                     ||||||.||.|||||||||||.|||||||||||.|||.||||.|||||||
BPUM_2555___i   1050 ATATGCTGGTCTTGATAAAGTGAACCCATCTTCTGTTCTTCTATCAGGCG   1099

BSNT_04253___   1100 TTCTGCTTCTTGAGCATTTAGGATGGAACGAAGCGGCTGATTTGGTTATC   1149
                     |.||..|.||||||||..|.||||||.|.|||||.||||||.|.||.||.
BPUM_2555___i   1100 TGCTTTTACTTGAGCACCTTGGATGGCAGGAAGCAGCTGATCTAGTGATT   1149

BSNT_04253___   1150 AAATCTATGGAAAAAACAATCGCTTCCAAAGTCGTAACTTACGATTTTGC   1199
                     .|||||.|.|||||.|||||.||.||.||||||||.||||||||||||||
BPUM_2555___i   1150 CAATCTGTTGAAAATACAATTGCATCAAAAGTCGTTACTTACGATTTTGC   1199

BSNT_04253___   1200 CAGATTAATGGACGGGGCGACTGAAGTGAAATGTTCAGAGTTCGGAGAAG   1249
                     .|||||||||||.||.||.||.||||||||||||||.|||||.|..||.|
BPUM_2555___i   1200 TAGATTAATGGATGGCGCAACAGAAGTGAAATGTTCTGAGTTTGCTGACG   1249

BSNT_04253___   1250 AACTGATCAAAAACATG----GACTAA   1272
                     |.||.|||||||||.||    ||    
BPUM_2555___i   1250 AGCTCATCAAAAACTTGTCTTGA----   1272


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